Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1721

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1719 and B158DRAFT_1720 are separated by 11 nucleotidesB158DRAFT_1720 and B158DRAFT_1721 are separated by 3 nucleotidesB158DRAFT_1721 and B158DRAFT_1722 are separated by 14 nucleotides B158DRAFT_1719: B158DRAFT_1719 - 4-hydroxyphenylpyruvate dioxygenase, at 1,793,808 to 1,794,890 _1719 B158DRAFT_1720: B158DRAFT_1720 - Lactoylglutathione lyase and related lyases, at 1,794,902 to 1,795,441 _1720 B158DRAFT_1721: B158DRAFT_1721 - Phenylalanine 4-hydroxylase (EC 1.14.16.1), at 1,795,445 to 1,796,266 _1721 B158DRAFT_1722: B158DRAFT_1722 - Collagenase and related proteases, at 1,796,281 to 1,797,597 _1722 Position (kb) 1795 1796 1797Strain fitness (log2 ratio) -2 -1 0 1at 1794.448 kb on - strand, within B158DRAFT_1719at 1794.483 kb on - strand, within B158DRAFT_1719at 1794.544 kb on + strand, within B158DRAFT_1719at 1794.544 kb on + strand, within B158DRAFT_1719at 1794.544 kb on + strand, within B158DRAFT_1719at 1794.552 kb on - strand, within B158DRAFT_1719at 1794.560 kb on - strand, within B158DRAFT_1719at 1794.609 kb on - strand, within B158DRAFT_1719at 1794.609 kb on - strand, within B158DRAFT_1719at 1794.632 kb on - strand, within B158DRAFT_1719at 1794.714 kb on + strand, within B158DRAFT_1719at 1794.737 kb on + strand, within B158DRAFT_1719at 1794.885 kb on + strandat 1794.885 kb on + strandat 1794.893 kb on - strandat 1794.914 kb on + strandat 1794.977 kb on + strand, within B158DRAFT_1720at 1795.013 kb on - strand, within B158DRAFT_1720at 1795.034 kb on + strand, within B158DRAFT_1720at 1795.034 kb on - strand, within B158DRAFT_1720at 1795.129 kb on + strand, within B158DRAFT_1720at 1795.154 kb on - strand, within B158DRAFT_1720at 1795.155 kb on + strand, within B158DRAFT_1720at 1795.155 kb on + strand, within B158DRAFT_1720at 1795.155 kb on + strand, within B158DRAFT_1720at 1795.155 kb on + strand, within B158DRAFT_1720at 1795.155 kb on + strand, within B158DRAFT_1720at 1795.163 kb on - strand, within B158DRAFT_1720at 1795.163 kb on - strand, within B158DRAFT_1720at 1795.163 kb on - strand, within B158DRAFT_1720at 1795.221 kb on + strand, within B158DRAFT_1720at 1795.221 kb on + strand, within B158DRAFT_1720at 1795.221 kb on + strand, within B158DRAFT_1720at 1795.221 kb on + strand, within B158DRAFT_1720at 1795.221 kb on + strand, within B158DRAFT_1720at 1795.221 kb on + strand, within B158DRAFT_1720at 1795.229 kb on - strand, within B158DRAFT_1720at 1795.229 kb on - strand, within B158DRAFT_1720at 1795.298 kb on + strand, within B158DRAFT_1720at 1795.298 kb on + strand, within B158DRAFT_1720at 1795.306 kb on - strand, within B158DRAFT_1720at 1795.319 kb on + strand, within B158DRAFT_1720at 1795.325 kb on - strand, within B158DRAFT_1720at 1795.435 kb on + strandat 1795.435 kb on + strandat 1795.436 kb on + strandat 1795.443 kb on - strandat 1795.584 kb on + strand, within B158DRAFT_1721at 1795.633 kb on + strand, within B158DRAFT_1721at 1795.633 kb on + strand, within B158DRAFT_1721at 1795.638 kb on + strand, within B158DRAFT_1721at 1795.823 kb on + strand, within B158DRAFT_1721at 1795.823 kb on + strand, within B158DRAFT_1721at 1795.831 kb on - strand, within B158DRAFT_1721at 1795.831 kb on - strand, within B158DRAFT_1721at 1795.831 kb on - strand, within B158DRAFT_1721at 1795.831 kb on - strand, within B158DRAFT_1721at 1795.831 kb on - strand, within B158DRAFT_1721at 1795.892 kb on - strand, within B158DRAFT_1721at 1795.954 kb on + strand, within B158DRAFT_1721at 1795.962 kb on - strand, within B158DRAFT_1721at 1796.012 kb on + strand, within B158DRAFT_1721at 1796.020 kb on - strand, within B158DRAFT_1721at 1796.020 kb on - strand, within B158DRAFT_1721at 1796.076 kb on - strand, within B158DRAFT_1721at 1796.084 kb on - strand, within B158DRAFT_1721at 1796.296 kb on + strandat 1796.304 kb on - strandat 1796.306 kb on - strandat 1796.309 kb on - strandat 1796.356 kb on - strandat 1796.376 kb on - strandat 1796.384 kb on + strandat 1796.384 kb on + strandat 1796.384 kb on + strandat 1796.384 kb on + strandat 1796.392 kb on - strandat 1796.488 kb on + strand, within B158DRAFT_1722at 1796.554 kb on + strand, within B158DRAFT_1722at 1796.554 kb on + strand, within B158DRAFT_1722at 1796.598 kb on + strand, within B158DRAFT_1722at 1796.598 kb on + strand, within B158DRAFT_1722at 1796.606 kb on - strand, within B158DRAFT_1722at 1796.606 kb on - strand, within B158DRAFT_1722at 1796.606 kb on - strand, within B158DRAFT_1722at 1796.606 kb on - strand, within B158DRAFT_1722at 1796.606 kb on - strand, within B158DRAFT_1722at 1796.606 kb on - strand, within B158DRAFT_1722at 1796.606 kb on - strand, within B158DRAFT_1722at 1796.606 kb on - strand, within B158DRAFT_1722at 1796.634 kb on + strand, within B158DRAFT_1722at 1796.634 kb on + strand, within B158DRAFT_1722at 1796.688 kb on - strand, within B158DRAFT_1722at 1796.688 kb on - strand, within B158DRAFT_1722at 1796.759 kb on + strand, within B158DRAFT_1722at 1796.782 kb on + strand, within B158DRAFT_1722at 1796.790 kb on - strand, within B158DRAFT_1722at 1796.795 kb on - strand, within B158DRAFT_1722at 1796.795 kb on - strand, within B158DRAFT_1722at 1796.798 kb on + strand, within B158DRAFT_1722at 1796.798 kb on + strand, within B158DRAFT_1722at 1796.806 kb on - strand, within B158DRAFT_1722at 1796.806 kb on - strand, within B158DRAFT_1722at 1796.806 kb on - strand, within B158DRAFT_1722at 1796.899 kb on + strand, within B158DRAFT_1722at 1796.902 kb on - strand, within B158DRAFT_1722at 1796.931 kb on + strand, within B158DRAFT_1722at 1796.999 kb on + strand, within B158DRAFT_1722at 1797.009 kb on + strand, within B158DRAFT_1722at 1797.009 kb on + strand, within B158DRAFT_1722at 1797.073 kb on + strand, within B158DRAFT_1722at 1797.121 kb on + strand, within B158DRAFT_1722at 1797.163 kb on + strand, within B158DRAFT_1722at 1797.163 kb on + strand, within B158DRAFT_1722at 1797.163 kb on + strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.202 kb on + strand, within B158DRAFT_1722at 1797.230 kb on - strand, within B158DRAFT_1722at 1797.256 kb on + strand, within B158DRAFT_1722at 1797.256 kb on + strand, within B158DRAFT_1722

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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1,794,448 - B158DRAFT_1719 0.59 -1.9
1,794,483 - B158DRAFT_1719 0.62 -0.8
1,794,544 + B158DRAFT_1719 0.68 +0.0
1,794,544 + B158DRAFT_1719 0.68 -0.3
1,794,544 + B158DRAFT_1719 0.68 +0.3
1,794,552 - B158DRAFT_1719 0.69 -0.0
1,794,560 - B158DRAFT_1719 0.69 +0.1
1,794,609 - B158DRAFT_1719 0.74 -0.1
1,794,609 - B158DRAFT_1719 0.74 -0.0
1,794,632 - B158DRAFT_1719 0.76 +0.1
1,794,714 + B158DRAFT_1719 0.84 -0.2
1,794,737 + B158DRAFT_1719 0.86 +0.1
1,794,885 + +0.0
1,794,885 + -0.3
1,794,893 - -0.0
1,794,914 + -0.0
1,794,977 + B158DRAFT_1720 0.14 -0.4
1,795,013 - B158DRAFT_1720 0.21 +0.8
1,795,034 + B158DRAFT_1720 0.24 -0.0
1,795,034 - B158DRAFT_1720 0.24 -0.1
1,795,129 + B158DRAFT_1720 0.42 -0.6
1,795,154 - B158DRAFT_1720 0.47 +0.1
1,795,155 + B158DRAFT_1720 0.47 +0.2
1,795,155 + B158DRAFT_1720 0.47 +0.1
1,795,155 + B158DRAFT_1720 0.47 -1.0
1,795,155 + B158DRAFT_1720 0.47 -0.2
1,795,155 + B158DRAFT_1720 0.47 -0.0
1,795,163 - B158DRAFT_1720 0.48 -0.5
1,795,163 - B158DRAFT_1720 0.48 +0.2
1,795,163 - B158DRAFT_1720 0.48 -1.0
1,795,221 + B158DRAFT_1720 0.59 -0.4
1,795,221 + B158DRAFT_1720 0.59 -1.0
1,795,221 + B158DRAFT_1720 0.59 +0.3
1,795,221 + B158DRAFT_1720 0.59 -0.0
1,795,221 + B158DRAFT_1720 0.59 -0.8
1,795,221 + B158DRAFT_1720 0.59 +0.4
1,795,229 - B158DRAFT_1720 0.61 -0.4
1,795,229 - B158DRAFT_1720 0.61 +0.1
1,795,298 + B158DRAFT_1720 0.73 +0.1
1,795,298 + B158DRAFT_1720 0.73 -0.6
1,795,306 - B158DRAFT_1720 0.75 -0.2
1,795,319 + B158DRAFT_1720 0.77 -0.5
1,795,325 - B158DRAFT_1720 0.78 +0.2
1,795,435 + -0.6
1,795,435 + -0.1
1,795,436 + -1.0
1,795,443 - +0.1
1,795,584 + B158DRAFT_1721 0.17 -0.0
1,795,633 + B158DRAFT_1721 0.23 -0.0
1,795,633 + B158DRAFT_1721 0.23 +0.1
1,795,638 + B158DRAFT_1721 0.23 -0.3
1,795,823 + B158DRAFT_1721 0.46 -0.6
1,795,823 + B158DRAFT_1721 0.46 -0.1
1,795,831 - B158DRAFT_1721 0.47 -0.6
1,795,831 - B158DRAFT_1721 0.47 +0.2
1,795,831 - B158DRAFT_1721 0.47 -1.1
1,795,831 - B158DRAFT_1721 0.47 +0.3
1,795,831 - B158DRAFT_1721 0.47 -0.6
1,795,892 - B158DRAFT_1721 0.54 +0.1
1,795,954 + B158DRAFT_1721 0.62 +0.1
1,795,962 - B158DRAFT_1721 0.63 -0.2
1,796,012 + B158DRAFT_1721 0.69 +0.1
1,796,020 - B158DRAFT_1721 0.70 -0.7
1,796,020 - B158DRAFT_1721 0.70 +0.2
1,796,076 - B158DRAFT_1721 0.77 -0.1
1,796,084 - B158DRAFT_1721 0.78 -0.4
1,796,296 + -0.7
1,796,304 - -0.3
1,796,306 - -0.1
1,796,309 - -1.1
1,796,356 - -0.6
1,796,376 - -0.3
1,796,384 + -0.3
1,796,384 + +0.2
1,796,384 + -0.5
1,796,384 + +0.2
1,796,392 - -0.1
1,796,488 + B158DRAFT_1722 0.16 +0.3
1,796,554 + B158DRAFT_1722 0.21 +0.9
1,796,554 + B158DRAFT_1722 0.21 -0.1
1,796,598 + B158DRAFT_1722 0.24 +0.4
1,796,598 + B158DRAFT_1722 0.24 -0.1
1,796,606 - B158DRAFT_1722 0.25 -0.1
1,796,606 - B158DRAFT_1722 0.25 -1.5
1,796,606 - B158DRAFT_1722 0.25 +0.8
1,796,606 - B158DRAFT_1722 0.25 -0.4
1,796,606 - B158DRAFT_1722 0.25 -0.0
1,796,606 - B158DRAFT_1722 0.25 +0.6
1,796,606 - B158DRAFT_1722 0.25 +0.3
1,796,606 - B158DRAFT_1722 0.25 +0.1
1,796,634 + B158DRAFT_1722 0.27 +0.0
1,796,634 + B158DRAFT_1722 0.27 +0.2
1,796,688 - B158DRAFT_1722 0.31 -0.3
1,796,688 - B158DRAFT_1722 0.31 -0.7
1,796,759 + B158DRAFT_1722 0.36 -0.7
1,796,782 + B158DRAFT_1722 0.38 -0.2
1,796,790 - B158DRAFT_1722 0.39 -0.5
1,796,795 - B158DRAFT_1722 0.39 +0.0
1,796,795 - B158DRAFT_1722 0.39 -0.1
1,796,798 + B158DRAFT_1722 0.39 -0.3
1,796,798 + B158DRAFT_1722 0.39 +0.2
1,796,806 - B158DRAFT_1722 0.40 +0.5
1,796,806 - B158DRAFT_1722 0.40 +0.2
1,796,806 - B158DRAFT_1722 0.40 -0.7
1,796,899 + B158DRAFT_1722 0.47 -0.4
1,796,902 - B158DRAFT_1722 0.47 +0.0
1,796,931 + B158DRAFT_1722 0.49 -0.3
1,796,999 + B158DRAFT_1722 0.55 +0.5
1,797,009 + B158DRAFT_1722 0.55 +0.3
1,797,009 + B158DRAFT_1722 0.55 +0.0
1,797,073 + B158DRAFT_1722 0.60 -2.2
1,797,121 + B158DRAFT_1722 0.64 +0.4
1,797,163 + B158DRAFT_1722 0.67 -0.0
1,797,163 + B158DRAFT_1722 0.67 +0.9
1,797,163 + B158DRAFT_1722 0.67 +0.8
1,797,171 - B158DRAFT_1722 0.68 +0.0
1,797,171 - B158DRAFT_1722 0.68 -0.0
1,797,171 - B158DRAFT_1722 0.68 -0.5
1,797,171 - B158DRAFT_1722 0.68 +0.1
1,797,171 - B158DRAFT_1722 0.68 +0.1
1,797,171 - B158DRAFT_1722 0.68 -0.4
1,797,171 - B158DRAFT_1722 0.68 +0.4
1,797,202 + B158DRAFT_1722 0.70 +0.3
1,797,230 - B158DRAFT_1722 0.72 -0.3
1,797,256 + B158DRAFT_1722 0.74 -0.3
1,797,256 + B158DRAFT_1722 0.74 -0.4

Or see this region's nucleotide sequence