Experiment: m.b. D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1124 and B158DRAFT_1125 overlap by 4 nucleotides B158DRAFT_1125 and B158DRAFT_1126 are separated by 5 nucleotides B158DRAFT_1126 and B158DRAFT_1127 are separated by 10 nucleotides
B158DRAFT_1124: B158DRAFT_1124 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 1,164,479 to 1,165,009
_1124
B158DRAFT_1125: B158DRAFT_1125 - Holliday junction DNA helicase subunit RuvA, at 1,165,006 to 1,165,623
_1125
B158DRAFT_1126: B158DRAFT_1126 - FOG: TPR repeat, SEL1 subfamily, at 1,165,629 to 1,167,098
_1126
B158DRAFT_1127: B158DRAFT_1127 - diguanylate cyclase (GGDEF) domain, at 1,167,109 to 1,168,140
_1127
Position (kb)
1165
1166
1167
1168 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1164.664 kb on + strand, within B158DRAFT_1124 at 1164.730 kb on - strand, within B158DRAFT_1124 at 1164.734 kb on + strand, within B158DRAFT_1124 at 1164.747 kb on - strand, within B158DRAFT_1124 at 1164.770 kb on + strand, within B158DRAFT_1124 at 1164.832 kb on + strand, within B158DRAFT_1124 at 1164.918 kb on - strand, within B158DRAFT_1124 at 1164.929 kb on + strand, within B158DRAFT_1124 at 1164.929 kb on + strand, within B158DRAFT_1124 at 1164.937 kb on - strand, within B158DRAFT_1124 at 1164.958 kb on - strand at 1164.959 kb on - strand at 1164.967 kb on + strand at 1164.967 kb on + strand at 1164.967 kb on + strand at 1164.967 kb on + strand at 1164.967 kb on + strand at 1164.975 kb on - strand at 1164.975 kb on - strand at 1164.975 kb on - strand at 1164.983 kb on - strand at 1165.068 kb on - strand, within B158DRAFT_1125 at 1165.070 kb on + strand, within B158DRAFT_1125 at 1165.117 kb on - strand, within B158DRAFT_1125 at 1165.161 kb on - strand, within B158DRAFT_1125 at 1165.186 kb on + strand, within B158DRAFT_1125 at 1165.210 kb on - strand, within B158DRAFT_1125 at 1165.252 kb on + strand, within B158DRAFT_1125 at 1165.260 kb on - strand, within B158DRAFT_1125 at 1165.261 kb on - strand, within B158DRAFT_1125 at 1165.289 kb on + strand, within B158DRAFT_1125 at 1165.401 kb on + strand, within B158DRAFT_1125 at 1165.429 kb on + strand, within B158DRAFT_1125 at 1165.484 kb on + strand, within B158DRAFT_1125 at 1165.561 kb on + strand, within B158DRAFT_1125 at 1165.585 kb on + strand at 1165.623 kb on + strand at 1165.623 kb on + strand at 1165.623 kb on + strand at 1165.626 kb on - strand at 1165.631 kb on - strand at 1165.631 kb on - strand at 1165.631 kb on - strand at 1165.661 kb on - strand at 1165.670 kb on - strand at 1165.775 kb on - strand at 1165.793 kb on + strand, within B158DRAFT_1126 at 1165.877 kb on - strand, within B158DRAFT_1126 at 1165.922 kb on - strand, within B158DRAFT_1126 at 1165.922 kb on - strand, within B158DRAFT_1126 at 1165.974 kb on + strand, within B158DRAFT_1126 at 1165.983 kb on + strand, within B158DRAFT_1126 at 1165.989 kb on - strand, within B158DRAFT_1126 at 1166.110 kb on + strand, within B158DRAFT_1126 at 1166.115 kb on + strand, within B158DRAFT_1126 at 1166.190 kb on + strand, within B158DRAFT_1126 at 1166.254 kb on - strand, within B158DRAFT_1126 at 1166.263 kb on + strand, within B158DRAFT_1126 at 1166.271 kb on - strand, within B158DRAFT_1126 at 1166.271 kb on - strand, within B158DRAFT_1126 at 1166.380 kb on + strand, within B158DRAFT_1126 at 1166.432 kb on - strand, within B158DRAFT_1126 at 1166.459 kb on - strand, within B158DRAFT_1126 at 1166.474 kb on + strand, within B158DRAFT_1126 at 1166.509 kb on + strand, within B158DRAFT_1126 at 1166.509 kb on + strand, within B158DRAFT_1126 at 1166.517 kb on - strand, within B158DRAFT_1126 at 1166.517 kb on - strand, within B158DRAFT_1126 at 1166.517 kb on - strand, within B158DRAFT_1126 at 1166.582 kb on + strand, within B158DRAFT_1126 at 1166.617 kb on + strand, within B158DRAFT_1126 at 1166.617 kb on - strand, within B158DRAFT_1126 at 1166.633 kb on + strand, within B158DRAFT_1126 at 1166.726 kb on + strand, within B158DRAFT_1126 at 1166.749 kb on - strand, within B158DRAFT_1126 at 1166.798 kb on + strand, within B158DRAFT_1126 at 1166.909 kb on - strand, within B158DRAFT_1126 at 1166.914 kb on - strand, within B158DRAFT_1126 at 1166.936 kb on + strand, within B158DRAFT_1126 at 1166.936 kb on + strand, within B158DRAFT_1126 at 1166.938 kb on + strand, within B158DRAFT_1126 at 1166.944 kb on - strand, within B158DRAFT_1126 at 1166.944 kb on - strand, within B158DRAFT_1126 at 1166.944 kb on - strand, within B158DRAFT_1126 at 1166.949 kb on - strand, within B158DRAFT_1126 at 1166.953 kb on + strand at 1166.953 kb on + strand at 1166.956 kb on - strand at 1166.956 kb on - strand at 1167.166 kb on + strand at 1167.166 kb on + strand at 1167.304 kb on - strand, within B158DRAFT_1127 at 1167.403 kb on + strand, within B158DRAFT_1127 at 1167.420 kb on - strand, within B158DRAFT_1127 at 1167.420 kb on - strand, within B158DRAFT_1127 at 1167.446 kb on + strand, within B158DRAFT_1127 at 1167.446 kb on + strand, within B158DRAFT_1127 at 1167.458 kb on + strand, within B158DRAFT_1127 at 1167.458 kb on + strand, within B158DRAFT_1127 at 1167.509 kb on + strand, within B158DRAFT_1127 at 1167.509 kb on + strand, within B158DRAFT_1127 at 1167.765 kb on + strand, within B158DRAFT_1127 at 1167.765 kb on + strand, within B158DRAFT_1127 at 1167.897 kb on + strand, within B158DRAFT_1127 at 1167.932 kb on + strand, within B158DRAFT_1127 at 1167.998 kb on - strand, within B158DRAFT_1127 at 1168.033 kb on + strand, within B158DRAFT_1127 at 1168.041 kb on - strand at 1168.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml remove 1,164,664 + B158DRAFT_1124 0.35 -3.3 1,164,730 - B158DRAFT_1124 0.47 -2.5 1,164,734 + B158DRAFT_1124 0.48 -3.1 1,164,747 - B158DRAFT_1124 0.50 -2.7 1,164,770 + B158DRAFT_1124 0.55 -2.6 1,164,832 + B158DRAFT_1124 0.66 -2.4 1,164,918 - B158DRAFT_1124 0.83 -2.5 1,164,929 + B158DRAFT_1124 0.85 -4.1 1,164,929 + B158DRAFT_1124 0.85 -2.5 1,164,937 - B158DRAFT_1124 0.86 -2.1 1,164,958 - -1.2 1,164,959 - -2.6 1,164,967 + -2.4 1,164,967 + -0.9 1,164,967 + -1.0 1,164,967 + -0.5 1,164,967 + +0.6 1,164,975 - -2.7 1,164,975 - -2.7 1,164,975 - -1.9 1,164,983 - -3.3 1,165,068 - B158DRAFT_1125 0.10 -3.8 1,165,070 + B158DRAFT_1125 0.10 -2.5 1,165,117 - B158DRAFT_1125 0.18 -1.6 1,165,161 - B158DRAFT_1125 0.25 -2.2 1,165,186 + B158DRAFT_1125 0.29 -3.9 1,165,210 - B158DRAFT_1125 0.33 -3.0 1,165,252 + B158DRAFT_1125 0.40 -2.7 1,165,260 - B158DRAFT_1125 0.41 -1.5 1,165,261 - B158DRAFT_1125 0.41 -3.6 1,165,289 + B158DRAFT_1125 0.46 -2.4 1,165,401 + B158DRAFT_1125 0.64 +0.7 1,165,429 + B158DRAFT_1125 0.68 -1.7 1,165,484 + B158DRAFT_1125 0.77 -3.3 1,165,561 + B158DRAFT_1125 0.90 -3.4 1,165,585 + -1.9 1,165,623 + -0.4 1,165,623 + +0.7 1,165,623 + -0.2 1,165,626 - -2.0 1,165,631 - -0.7 1,165,631 - -0.8 1,165,631 - -0.7 1,165,661 - -0.6 1,165,670 - -0.4 1,165,775 - -1.2 1,165,793 + B158DRAFT_1126 0.11 +0.1 1,165,877 - B158DRAFT_1126 0.17 -0.4 1,165,922 - B158DRAFT_1126 0.20 +0.8 1,165,922 - B158DRAFT_1126 0.20 -0.3 1,165,974 + B158DRAFT_1126 0.23 +0.1 1,165,983 + B158DRAFT_1126 0.24 -0.5 1,165,989 - B158DRAFT_1126 0.24 +0.3 1,166,110 + B158DRAFT_1126 0.33 -1.0 1,166,115 + B158DRAFT_1126 0.33 -0.1 1,166,190 + B158DRAFT_1126 0.38 -0.2 1,166,254 - B158DRAFT_1126 0.43 -1.1 1,166,263 + B158DRAFT_1126 0.43 -0.2 1,166,271 - B158DRAFT_1126 0.44 -0.2 1,166,271 - B158DRAFT_1126 0.44 -0.5 1,166,380 + B158DRAFT_1126 0.51 +0.2 1,166,432 - B158DRAFT_1126 0.55 -0.9 1,166,459 - B158DRAFT_1126 0.56 +0.5 1,166,474 + B158DRAFT_1126 0.57 -0.3 1,166,509 + B158DRAFT_1126 0.60 -0.6 1,166,509 + B158DRAFT_1126 0.60 -0.3 1,166,517 - B158DRAFT_1126 0.60 -0.9 1,166,517 - B158DRAFT_1126 0.60 +0.4 1,166,517 - B158DRAFT_1126 0.60 -0.3 1,166,582 + B158DRAFT_1126 0.65 -0.8 1,166,617 + B158DRAFT_1126 0.67 -0.3 1,166,617 - B158DRAFT_1126 0.67 -0.1 1,166,633 + B158DRAFT_1126 0.68 -0.3 1,166,726 + B158DRAFT_1126 0.75 -0.9 1,166,749 - B158DRAFT_1126 0.76 -0.7 1,166,798 + B158DRAFT_1126 0.80 +0.1 1,166,909 - B158DRAFT_1126 0.87 -0.1 1,166,914 - B158DRAFT_1126 0.87 -0.3 1,166,936 + B158DRAFT_1126 0.89 -0.6 1,166,936 + B158DRAFT_1126 0.89 -0.4 1,166,938 + B158DRAFT_1126 0.89 +0.1 1,166,944 - B158DRAFT_1126 0.89 -0.6 1,166,944 - B158DRAFT_1126 0.89 +0.4 1,166,944 - B158DRAFT_1126 0.89 +0.3 1,166,949 - B158DRAFT_1126 0.90 -0.6 1,166,953 + -0.2 1,166,953 + +0.6 1,166,956 - -0.1 1,166,956 - -0.2 1,167,166 + -0.0 1,167,166 + -0.8 1,167,304 - B158DRAFT_1127 0.19 -0.0 1,167,403 + B158DRAFT_1127 0.28 +0.4 1,167,420 - B158DRAFT_1127 0.30 +0.5 1,167,420 - B158DRAFT_1127 0.30 +0.6 1,167,446 + B158DRAFT_1127 0.33 -0.5 1,167,446 + B158DRAFT_1127 0.33 -0.2 1,167,458 + B158DRAFT_1127 0.34 +0.1 1,167,458 + B158DRAFT_1127 0.34 +0.5 1,167,509 + B158DRAFT_1127 0.39 -0.4 1,167,509 + B158DRAFT_1127 0.39 -0.5 1,167,765 + B158DRAFT_1127 0.64 +0.8 1,167,765 + B158DRAFT_1127 0.64 -0.7 1,167,897 + B158DRAFT_1127 0.76 +0.1 1,167,932 + B158DRAFT_1127 0.80 +0.2 1,167,998 - B158DRAFT_1127 0.86 +0.1 1,168,033 + B158DRAFT_1127 0.90 +0.2 1,168,041 - +0.2 1,168,058 - +0.3
Or see this region's nucleotide sequence