Experiment: m.b. D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0969 and B158DRAFT_0970 are separated by 139 nucleotides B158DRAFT_0970 and B158DRAFT_0971 overlap by 4 nucleotides B158DRAFT_0971 and B158DRAFT_0972 are separated by 29 nucleotides B158DRAFT_0972 and B158DRAFT_0973 are separated by 37 nucleotides
B158DRAFT_0969: B158DRAFT_0969 - SsrA-binding protein, at 1,001,066 to 1,001,539
_0969
B158DRAFT_0970: B158DRAFT_0970 - Oligoketide cyclase/lipid transport protein, at 1,001,679 to 1,002,113
_0970
B158DRAFT_0971: B158DRAFT_0971 - Uncharacterized protein conserved in bacteria, at 1,002,110 to 1,002,403
_0971
B158DRAFT_0972: B158DRAFT_0972 - 3-deoxy-D-manno-octulosonic-acid transferase, at 1,002,433 to 1,003,680
_0972
B158DRAFT_0973: B158DRAFT_0973 - type I secretion outer membrane protein, TolC family, at 1,003,718 to 1,005,091
_0973
Position (kb)
1002
1003
1004 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1001.474 kb on + strand, within B158DRAFT_0969 at 1001.474 kb on + strand, within B158DRAFT_0969 at 1001.482 kb on - strand, within B158DRAFT_0969 at 1001.482 kb on - strand, within B158DRAFT_0969 at 1001.487 kb on + strand, within B158DRAFT_0969 at 1001.495 kb on - strand at 1001.495 kb on - strand at 1001.523 kb on + strand at 1001.579 kb on + strand at 1001.610 kb on - strand at 1001.632 kb on + strand at 1002.088 kb on + strand at 1002.088 kb on + strand at 1002.088 kb on + strand at 1002.088 kb on + strand at 1002.098 kb on + strand at 1002.098 kb on + strand at 1002.098 kb on + strand at 1002.098 kb on + strand at 1002.098 kb on + strand at 1003.724 kb on - strand at 1003.724 kb on - strand at 1003.782 kb on + strand at 1003.797 kb on - strand at 1003.848 kb on - strand at 1003.848 kb on - strand at 1003.918 kb on + strand, within B158DRAFT_0973 at 1003.918 kb on + strand, within B158DRAFT_0973 at 1003.926 kb on - strand, within B158DRAFT_0973 at 1003.987 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.999 kb on - strand, within B158DRAFT_0973 at 1004.035 kb on + strand, within B158DRAFT_0973 at 1004.039 kb on - strand, within B158DRAFT_0973 at 1004.094 kb on + strand, within B158DRAFT_0973 at 1004.094 kb on + strand, within B158DRAFT_0973 at 1004.165 kb on + strand, within B158DRAFT_0973 at 1004.173 kb on - strand, within B158DRAFT_0973 at 1004.173 kb on - strand, within B158DRAFT_0973 at 1004.173 kb on - strand, within B158DRAFT_0973 at 1004.223 kb on - strand, within B158DRAFT_0973 at 1004.223 kb on - strand, within B158DRAFT_0973 at 1004.231 kb on + strand, within B158DRAFT_0973 at 1004.231 kb on + strand, within B158DRAFT_0973 at 1004.239 kb on - strand, within B158DRAFT_0973 at 1004.241 kb on + strand, within B158DRAFT_0973 at 1004.254 kb on - strand, within B158DRAFT_0973 at 1004.310 kb on + strand, within B158DRAFT_0973 at 1004.310 kb on + strand, within B158DRAFT_0973 at 1004.444 kb on + strand, within B158DRAFT_0973 at 1004.446 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on - strand, within B158DRAFT_0973 at 1004.462 kb on - strand, within B158DRAFT_0973 at 1004.462 kb on - strand, within B158DRAFT_0973 at 1004.489 kb on + strand, within B158DRAFT_0973 at 1004.497 kb on - strand, within B158DRAFT_0973 at 1004.505 kb on + strand, within B158DRAFT_0973 at 1004.538 kb on + strand, within B158DRAFT_0973 at 1004.546 kb on - strand, within B158DRAFT_0973 at 1004.546 kb on - strand, within B158DRAFT_0973 at 1004.546 kb on - strand, within B158DRAFT_0973 at 1004.592 kb on - strand, within B158DRAFT_0973 at 1004.651 kb on + strand, within B158DRAFT_0973 at 1004.651 kb on + strand, within B158DRAFT_0973
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml remove 1,001,474 + B158DRAFT_0969 0.86 -1.5 1,001,474 + B158DRAFT_0969 0.86 -0.6 1,001,482 - B158DRAFT_0969 0.88 -2.7 1,001,482 - B158DRAFT_0969 0.88 -0.8 1,001,487 + B158DRAFT_0969 0.89 -1.3 1,001,495 - -0.7 1,001,495 - -0.1 1,001,523 + -1.6 1,001,579 + +1.8 1,001,610 - -0.2 1,001,632 + -0.9 1,002,088 + -1.3 1,002,088 + -1.8 1,002,088 + -2.6 1,002,088 + -0.5 1,002,098 + -2.0 1,002,098 + -1.1 1,002,098 + -1.3 1,002,098 + -3.8 1,002,098 + -0.1 1,003,724 - -0.9 1,003,724 - -0.6 1,003,782 + -4.6 1,003,797 - -1.9 1,003,848 - -2.6 1,003,848 - -1.4 1,003,918 + B158DRAFT_0973 0.15 -1.6 1,003,918 + B158DRAFT_0973 0.15 -3.6 1,003,926 - B158DRAFT_0973 0.15 -3.4 1,003,987 + B158DRAFT_0973 0.20 -2.2 1,003,991 + B158DRAFT_0973 0.20 -3.3 1,003,991 + B158DRAFT_0973 0.20 -1.5 1,003,991 + B158DRAFT_0973 0.20 -5.1 1,003,991 + B158DRAFT_0973 0.20 -4.8 1,003,991 + B158DRAFT_0973 0.20 -3.5 1,003,999 - B158DRAFT_0973 0.20 -3.4 1,004,035 + B158DRAFT_0973 0.23 -2.1 1,004,039 - B158DRAFT_0973 0.23 -2.5 1,004,094 + B158DRAFT_0973 0.27 -2.8 1,004,094 + B158DRAFT_0973 0.27 -2.0 1,004,165 + B158DRAFT_0973 0.33 -2.1 1,004,173 - B158DRAFT_0973 0.33 -3.9 1,004,173 - B158DRAFT_0973 0.33 -3.3 1,004,173 - B158DRAFT_0973 0.33 -2.6 1,004,223 - B158DRAFT_0973 0.37 -1.5 1,004,223 - B158DRAFT_0973 0.37 -3.1 1,004,231 + B158DRAFT_0973 0.37 -2.1 1,004,231 + B158DRAFT_0973 0.37 -2.3 1,004,239 - B158DRAFT_0973 0.38 -5.0 1,004,241 + B158DRAFT_0973 0.38 -1.3 1,004,254 - B158DRAFT_0973 0.39 -3.4 1,004,310 + B158DRAFT_0973 0.43 -5.4 1,004,310 + B158DRAFT_0973 0.43 -2.6 1,004,444 + B158DRAFT_0973 0.53 -2.5 1,004,446 + B158DRAFT_0973 0.53 -1.1 1,004,454 + B158DRAFT_0973 0.54 -0.3 1,004,454 + B158DRAFT_0973 0.54 -3.8 1,004,454 + B158DRAFT_0973 0.54 -5.2 1,004,454 - B158DRAFT_0973 0.54 -2.1 1,004,462 - B158DRAFT_0973 0.54 -3.4 1,004,462 - B158DRAFT_0973 0.54 -3.5 1,004,489 + B158DRAFT_0973 0.56 -2.4 1,004,497 - B158DRAFT_0973 0.57 -2.4 1,004,505 + B158DRAFT_0973 0.57 -3.7 1,004,538 + B158DRAFT_0973 0.60 -2.9 1,004,546 - B158DRAFT_0973 0.60 -3.6 1,004,546 - B158DRAFT_0973 0.60 -4.1 1,004,546 - B158DRAFT_0973 0.60 -0.6 1,004,592 - B158DRAFT_0973 0.64 -3.9 1,004,651 + B158DRAFT_0973 0.68 -3.0 1,004,651 + B158DRAFT_0973 0.68 -2.0
Or see this region's nucleotide sequence