Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0602

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0601 and B158DRAFT_0602 are separated by 41 nucleotidesB158DRAFT_0602 and B158DRAFT_0603 are separated by 154 nucleotides B158DRAFT_0601: B158DRAFT_0601 - DNA replication and repair protein RecN, at 605,196 to 606,854 _0601 B158DRAFT_0602: B158DRAFT_0602 - Predicted sugar kinase, at 606,896 to 607,771 _0602 B158DRAFT_0603: B158DRAFT_0603 - heat-inducible transcription repressor HrcA, at 607,926 to 608,954 _0603 Position (kb) 606 607 608Strain fitness (log2 ratio) -2 -1 0 1at 605.908 kb on + strand, within B158DRAFT_0601at 605.913 kb on + strand, within B158DRAFT_0601at 605.921 kb on - strand, within B158DRAFT_0601at 605.944 kb on + strand, within B158DRAFT_0601at 605.945 kb on - strand, within B158DRAFT_0601at 605.971 kb on - strand, within B158DRAFT_0601at 605.980 kb on + strand, within B158DRAFT_0601at 606.022 kb on - strand, within B158DRAFT_0601at 606.022 kb on - strand, within B158DRAFT_0601at 606.033 kb on + strand, within B158DRAFT_0601at 606.113 kb on - strand, within B158DRAFT_0601at 606.182 kb on - strand, within B158DRAFT_0601at 606.258 kb on - strand, within B158DRAFT_0601at 606.275 kb on + strand, within B158DRAFT_0601at 606.283 kb on - strand, within B158DRAFT_0601at 606.283 kb on - strand, within B158DRAFT_0601at 606.285 kb on + strand, within B158DRAFT_0601at 606.293 kb on - strand, within B158DRAFT_0601at 606.293 kb on - strand, within B158DRAFT_0601at 606.339 kb on - strand, within B158DRAFT_0601at 606.370 kb on + strand, within B158DRAFT_0601at 606.378 kb on - strand, within B158DRAFT_0601at 606.378 kb on - strand, within B158DRAFT_0601at 606.380 kb on + strand, within B158DRAFT_0601at 606.409 kb on - strand, within B158DRAFT_0601at 606.416 kb on - strand, within B158DRAFT_0601at 606.430 kb on - strand, within B158DRAFT_0601at 606.450 kb on + strand, within B158DRAFT_0601at 606.458 kb on - strand, within B158DRAFT_0601at 606.458 kb on - strand, within B158DRAFT_0601at 606.549 kb on - strand, within B158DRAFT_0601at 606.571 kb on - strand, within B158DRAFT_0601at 606.592 kb on + strand, within B158DRAFT_0601at 606.619 kb on - strand, within B158DRAFT_0601at 606.721 kb on + strandat 606.721 kb on + strandat 606.721 kb on + strandat 606.721 kb on + strandat 606.721 kb on + strandat 606.726 kb on + strandat 606.729 kb on - strandat 606.729 kb on - strandat 606.839 kb on + strandat 606.839 kb on + strandat 606.846 kb on + strandat 606.854 kb on - strandat 606.854 kb on - strandat 606.854 kb on - strandat 606.854 kb on - strandat 606.901 kb on + strandat 606.902 kb on - strandat 606.902 kb on - strandat 606.909 kb on - strandat 607.836 kb on + strandat 607.873 kb on + strandat 607.873 kb on + strandat 607.880 kb on + strandat 607.880 kb on + strandat 607.880 kb on + strandat 607.881 kb on - strandat 607.881 kb on - strandat 607.881 kb on - strandat 607.881 kb on - strandat 607.881 kb on - strandat 607.887 kb on + strandat 607.895 kb on - strandat 607.895 kb on - strandat 607.895 kb on - strandat 607.895 kb on - strandat 607.956 kb on - strandat 607.966 kb on - strandat 607.971 kb on + strandat 608.057 kb on + strand, within B158DRAFT_0603at 608.065 kb on - strand, within B158DRAFT_0603at 608.083 kb on + strand, within B158DRAFT_0603at 608.134 kb on + strand, within B158DRAFT_0603at 608.249 kb on + strand, within B158DRAFT_0603at 608.249 kb on + strand, within B158DRAFT_0603at 608.249 kb on + strand, within B158DRAFT_0603at 608.252 kb on - strand, within B158DRAFT_0603at 608.254 kb on + strand, within B158DRAFT_0603at 608.254 kb on + strand, within B158DRAFT_0603at 608.260 kb on + strand, within B158DRAFT_0603at 608.261 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.278 kb on - strand, within B158DRAFT_0603at 608.278 kb on - strand, within B158DRAFT_0603at 608.300 kb on - strand, within B158DRAFT_0603at 608.327 kb on + strand, within B158DRAFT_0603at 608.335 kb on - strand, within B158DRAFT_0603at 608.358 kb on - strand, within B158DRAFT_0603at 608.400 kb on + strand, within B158DRAFT_0603at 608.425 kb on + strand, within B158DRAFT_0603at 608.433 kb on - strand, within B158DRAFT_0603at 608.493 kb on + strand, within B158DRAFT_0603at 608.495 kb on + strand, within B158DRAFT_0603at 608.501 kb on - strand, within B158DRAFT_0603at 608.501 kb on - strand, within B158DRAFT_0603at 608.503 kb on - strand, within B158DRAFT_0603at 608.536 kb on - strand, within B158DRAFT_0603at 608.573 kb on - strand, within B158DRAFT_0603at 608.604 kb on + strand, within B158DRAFT_0603at 608.622 kb on + strand, within B158DRAFT_0603at 608.622 kb on + strand, within B158DRAFT_0603at 608.624 kb on - strand, within B158DRAFT_0603at 608.630 kb on - strand, within B158DRAFT_0603at 608.630 kb on - strand, within B158DRAFT_0603at 608.630 kb on - strand, within B158DRAFT_0603at 608.659 kb on - strand, within B158DRAFT_0603at 608.669 kb on - strand, within B158DRAFT_0603at 608.760 kb on - strand, within B158DRAFT_0603

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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605,908 + B158DRAFT_0601 0.43 -0.3
605,913 + B158DRAFT_0601 0.43 -0.4
605,921 - B158DRAFT_0601 0.44 -0.5
605,944 + B158DRAFT_0601 0.45 -1.0
605,945 - B158DRAFT_0601 0.45 -0.1
605,971 - B158DRAFT_0601 0.47 -0.0
605,980 + B158DRAFT_0601 0.47 -0.5
606,022 - B158DRAFT_0601 0.50 -1.6
606,022 - B158DRAFT_0601 0.50 +0.1
606,033 + B158DRAFT_0601 0.50 -0.6
606,113 - B158DRAFT_0601 0.55 -0.3
606,182 - B158DRAFT_0601 0.59 -0.7
606,258 - B158DRAFT_0601 0.64 -0.5
606,275 + B158DRAFT_0601 0.65 -0.3
606,283 - B158DRAFT_0601 0.66 -0.2
606,283 - B158DRAFT_0601 0.66 -0.3
606,285 + B158DRAFT_0601 0.66 +0.0
606,293 - B158DRAFT_0601 0.66 -0.5
606,293 - B158DRAFT_0601 0.66 -1.0
606,339 - B158DRAFT_0601 0.69 -1.2
606,370 + B158DRAFT_0601 0.71 -0.7
606,378 - B158DRAFT_0601 0.71 -0.6
606,378 - B158DRAFT_0601 0.71 -0.9
606,380 + B158DRAFT_0601 0.71 -0.3
606,409 - B158DRAFT_0601 0.73 -0.5
606,416 - B158DRAFT_0601 0.74 -0.1
606,430 - B158DRAFT_0601 0.74 -0.3
606,450 + B158DRAFT_0601 0.76 -1.0
606,458 - B158DRAFT_0601 0.76 -1.0
606,458 - B158DRAFT_0601 0.76 -0.2
606,549 - B158DRAFT_0601 0.82 -0.6
606,571 - B158DRAFT_0601 0.83 -1.2
606,592 + B158DRAFT_0601 0.84 +0.0
606,619 - B158DRAFT_0601 0.86 -1.9
606,721 + -0.0
606,721 + -0.6
606,721 + -0.0
606,721 + +1.1
606,721 + -2.3
606,726 + -0.2
606,729 - -0.6
606,729 - -0.6
606,839 + -0.3
606,839 + -0.5
606,846 + -1.2
606,854 - -0.5
606,854 - +0.2
606,854 - -0.2
606,854 - -0.5
606,901 + -0.4
606,902 - -0.5
606,902 - -0.2
606,909 - +0.5
607,836 + -0.1
607,873 + -0.4
607,873 + -0.2
607,880 + -0.5
607,880 + -1.5
607,880 + -0.7
607,881 - +0.0
607,881 - +0.1
607,881 - -0.2
607,881 - +0.7
607,881 - +0.3
607,887 + +0.7
607,895 - -0.3
607,895 - -0.2
607,895 - -0.2
607,895 - +0.3
607,956 - +0.2
607,966 - +0.3
607,971 + +0.2
608,057 + B158DRAFT_0603 0.13 +0.0
608,065 - B158DRAFT_0603 0.14 -1.1
608,083 + B158DRAFT_0603 0.15 -0.3
608,134 + B158DRAFT_0603 0.20 -0.1
608,249 + B158DRAFT_0603 0.31 +0.4
608,249 + B158DRAFT_0603 0.31 +0.6
608,249 + B158DRAFT_0603 0.31 -0.2
608,252 - B158DRAFT_0603 0.32 +0.2
608,254 + B158DRAFT_0603 0.32 -0.4
608,254 + B158DRAFT_0603 0.32 -0.0
608,260 + B158DRAFT_0603 0.32 +0.8
608,261 - B158DRAFT_0603 0.33 -0.2
608,268 - B158DRAFT_0603 0.33 +0.7
608,268 - B158DRAFT_0603 0.33 -0.0
608,268 - B158DRAFT_0603 0.33 +0.2
608,268 - B158DRAFT_0603 0.33 -1.6
608,278 - B158DRAFT_0603 0.34 +0.0
608,278 - B158DRAFT_0603 0.34 +0.3
608,300 - B158DRAFT_0603 0.36 +0.6
608,327 + B158DRAFT_0603 0.39 +0.1
608,335 - B158DRAFT_0603 0.40 +0.2
608,358 - B158DRAFT_0603 0.42 +0.4
608,400 + B158DRAFT_0603 0.46 -0.1
608,425 + B158DRAFT_0603 0.48 +0.2
608,433 - B158DRAFT_0603 0.49 +0.1
608,493 + B158DRAFT_0603 0.55 +0.1
608,495 + B158DRAFT_0603 0.55 -0.2
608,501 - B158DRAFT_0603 0.56 -0.3
608,501 - B158DRAFT_0603 0.56 +0.5
608,503 - B158DRAFT_0603 0.56 -2.5
608,536 - B158DRAFT_0603 0.59 -0.5
608,573 - B158DRAFT_0603 0.63 -0.2
608,604 + B158DRAFT_0603 0.66 -1.6
608,622 + B158DRAFT_0603 0.68 -0.5
608,622 + B158DRAFT_0603 0.68 -0.0
608,624 - B158DRAFT_0603 0.68 -0.2
608,630 - B158DRAFT_0603 0.68 +0.1
608,630 - B158DRAFT_0603 0.68 +0.1
608,630 - B158DRAFT_0603 0.68 -0.3
608,659 - B158DRAFT_0603 0.71 +0.2
608,669 - B158DRAFT_0603 0.72 -0.1
608,760 - B158DRAFT_0603 0.81 +0.1

Or see this region's nucleotide sequence