Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0565

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0563 and B158DRAFT_0564 are separated by 100 nucleotidesB158DRAFT_0564 and B158DRAFT_0565 are separated by 165 nucleotidesB158DRAFT_0565 and B158DRAFT_0566 are separated by 140 nucleotides B158DRAFT_0563: B158DRAFT_0563 - hypothetical protein, at 567,440 to 567,931 _0563 B158DRAFT_0564: B158DRAFT_0564 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 568,032 to 568,538 _0564 B158DRAFT_0565: B158DRAFT_0565 - malate dehydrogenase, at 568,704 to 569,681 _0565 B158DRAFT_0566: B158DRAFT_0566 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 569,822 to 571,924 _0566 Position (kb) 568 569 570Strain fitness (log2 ratio) -3 -2 -1 0 1at 567.733 kb on - strand, within B158DRAFT_0563at 567.757 kb on - strand, within B158DRAFT_0563at 567.791 kb on + strand, within B158DRAFT_0563at 567.791 kb on + strand, within B158DRAFT_0563at 567.791 kb on + strand, within B158DRAFT_0563at 567.791 kb on + strand, within B158DRAFT_0563at 567.791 kb on + strand, within B158DRAFT_0563at 567.986 kb on + strandat 567.986 kb on + strandat 567.986 kb on + strandat 567.986 kb on + strandat 567.994 kb on - strandat 568.031 kb on - strandat 568.035 kb on + strandat 568.067 kb on + strandat 568.067 kb on + strandat 568.067 kb on + strandat 568.072 kb on - strandat 568.106 kb on + strand, within B158DRAFT_0564at 568.239 kb on + strand, within B158DRAFT_0564at 568.246 kb on + strand, within B158DRAFT_0564at 568.247 kb on - strand, within B158DRAFT_0564at 568.258 kb on + strand, within B158DRAFT_0564at 568.292 kb on + strand, within B158DRAFT_0564at 568.300 kb on - strand, within B158DRAFT_0564at 568.300 kb on - strand, within B158DRAFT_0564at 568.467 kb on - strand, within B158DRAFT_0564at 568.558 kb on + strandat 568.566 kb on - strandat 568.693 kb on + strandat 568.715 kb on - strandat 569.820 kb on + strandat 569.820 kb on + strandat 569.820 kb on + strandat 569.820 kb on + strandat 569.820 kb on + strandat 569.820 kb on + strandat 569.820 kb on + strandat 569.820 kb on + strandat 569.820 kb on + strandat 569.828 kb on - strandat 569.828 kb on - strandat 569.828 kb on - strandat 569.828 kb on - strandat 569.828 kb on - strandat 569.828 kb on - strandat 569.828 kb on - strandat 569.828 kb on - strandat 569.828 kb on - strandat 569.953 kb on - strandat 569.972 kb on + strandat 570.028 kb on - strandat 570.077 kb on - strand, within B158DRAFT_0566at 570.077 kb on - strand, within B158DRAFT_0566at 570.110 kb on + strand, within B158DRAFT_0566at 570.116 kb on - strand, within B158DRAFT_0566at 570.183 kb on - strand, within B158DRAFT_0566at 570.208 kb on + strand, within B158DRAFT_0566at 570.208 kb on + strand, within B158DRAFT_0566at 570.208 kb on + strand, within B158DRAFT_0566at 570.229 kb on + strand, within B158DRAFT_0566at 570.229 kb on + strand, within B158DRAFT_0566at 570.229 kb on + strand, within B158DRAFT_0566at 570.258 kb on - strand, within B158DRAFT_0566at 570.260 kb on - strand, within B158DRAFT_0566at 570.264 kb on + strand, within B158DRAFT_0566at 570.318 kb on + strand, within B158DRAFT_0566at 570.318 kb on + strand, within B158DRAFT_0566at 570.318 kb on + strand, within B158DRAFT_0566at 570.318 kb on + strand, within B158DRAFT_0566at 570.318 kb on + strand, within B158DRAFT_0566at 570.318 kb on + strand, within B158DRAFT_0566at 570.326 kb on - strand, within B158DRAFT_0566at 570.326 kb on - strand, within B158DRAFT_0566at 570.326 kb on - strand, within B158DRAFT_0566at 570.326 kb on - strand, within B158DRAFT_0566at 570.326 kb on - strand, within B158DRAFT_0566at 570.340 kb on + strand, within B158DRAFT_0566at 570.340 kb on + strand, within B158DRAFT_0566at 570.348 kb on - strand, within B158DRAFT_0566at 570.369 kb on - strand, within B158DRAFT_0566at 570.441 kb on + strand, within B158DRAFT_0566at 570.441 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.517 kb on + strand, within B158DRAFT_0566at 570.525 kb on + strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.525 kb on - strand, within B158DRAFT_0566at 570.537 kb on - strand, within B158DRAFT_0566at 570.591 kb on + strand, within B158DRAFT_0566at 570.595 kb on + strand, within B158DRAFT_0566at 570.595 kb on + strand, within B158DRAFT_0566at 570.595 kb on + strand, within B158DRAFT_0566at 570.595 kb on + strand, within B158DRAFT_0566at 570.595 kb on + strand, within B158DRAFT_0566at 570.602 kb on + strand, within B158DRAFT_0566at 570.603 kb on - strand, within B158DRAFT_0566at 570.603 kb on - strand, within B158DRAFT_0566at 570.605 kb on - strand, within B158DRAFT_0566at 570.624 kb on - strand, within B158DRAFT_0566

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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567,733 - B158DRAFT_0563 0.60 +0.3
567,757 - B158DRAFT_0563 0.64 +0.2
567,791 + B158DRAFT_0563 0.71 -0.4
567,791 + B158DRAFT_0563 0.71 +0.2
567,791 + B158DRAFT_0563 0.71 +0.1
567,791 + B158DRAFT_0563 0.71 -0.0
567,791 + B158DRAFT_0563 0.71 +0.2
567,986 + -0.5
567,986 + -0.5
567,986 + -0.4
567,986 + -0.6
567,994 - -0.7
568,031 - -0.1
568,035 + +0.5
568,067 + +0.1
568,067 + +0.1
568,067 + +0.5
568,072 - +0.2
568,106 + B158DRAFT_0564 0.15 -0.9
568,239 + B158DRAFT_0564 0.41 +0.4
568,246 + B158DRAFT_0564 0.42 -0.2
568,247 - B158DRAFT_0564 0.42 +0.9
568,258 + B158DRAFT_0564 0.45 -0.2
568,292 + B158DRAFT_0564 0.51 -0.5
568,300 - B158DRAFT_0564 0.53 +0.0
568,300 - B158DRAFT_0564 0.53 -0.3
568,467 - B158DRAFT_0564 0.86 +0.2
568,558 + -0.1
568,566 - -0.0
568,693 + -0.0
568,715 - +0.2
569,820 + +0.2
569,820 + -0.1
569,820 + -1.0
569,820 + -0.2
569,820 + -0.2
569,820 + -0.5
569,820 + -0.4
569,820 + -0.1
569,820 + +0.9
569,828 - -0.5
569,828 - +1.7
569,828 - -0.0
569,828 - -1.3
569,828 - +1.0
569,828 - -0.1
569,828 - -0.0
569,828 - -0.1
569,828 - -0.1
569,953 - -0.5
569,972 + -1.4
570,028 - -0.8
570,077 - B158DRAFT_0566 0.12 -1.1
570,077 - B158DRAFT_0566 0.12 -2.0
570,110 + B158DRAFT_0566 0.14 -1.0
570,116 - B158DRAFT_0566 0.14 -1.0
570,183 - B158DRAFT_0566 0.17 -1.2
570,208 + B158DRAFT_0566 0.18 -2.5
570,208 + B158DRAFT_0566 0.18 -2.0
570,208 + B158DRAFT_0566 0.18 -1.1
570,229 + B158DRAFT_0566 0.19 -0.8
570,229 + B158DRAFT_0566 0.19 -0.0
570,229 + B158DRAFT_0566 0.19 -1.4
570,258 - B158DRAFT_0566 0.21 +0.2
570,260 - B158DRAFT_0566 0.21 -0.9
570,264 + B158DRAFT_0566 0.21 -1.1
570,318 + B158DRAFT_0566 0.24 -1.8
570,318 + B158DRAFT_0566 0.24 -2.2
570,318 + B158DRAFT_0566 0.24 -0.5
570,318 + B158DRAFT_0566 0.24 -2.8
570,318 + B158DRAFT_0566 0.24 -2.3
570,318 + B158DRAFT_0566 0.24 -1.1
570,326 - B158DRAFT_0566 0.24 -1.8
570,326 - B158DRAFT_0566 0.24 +0.2
570,326 - B158DRAFT_0566 0.24 -1.9
570,326 - B158DRAFT_0566 0.24 -1.0
570,326 - B158DRAFT_0566 0.24 -0.1
570,340 + B158DRAFT_0566 0.25 -1.2
570,340 + B158DRAFT_0566 0.25 -1.5
570,348 - B158DRAFT_0566 0.25 -3.0
570,369 - B158DRAFT_0566 0.26 -2.8
570,441 + B158DRAFT_0566 0.29 -0.5
570,441 + B158DRAFT_0566 0.29 -0.3
570,517 + B158DRAFT_0566 0.33 -2.3
570,517 + B158DRAFT_0566 0.33 -0.9
570,517 + B158DRAFT_0566 0.33 -3.4
570,517 + B158DRAFT_0566 0.33 -1.8
570,517 + B158DRAFT_0566 0.33 -0.7
570,517 + B158DRAFT_0566 0.33 -0.4
570,517 + B158DRAFT_0566 0.33 +0.5
570,517 + B158DRAFT_0566 0.33 -2.4
570,517 + B158DRAFT_0566 0.33 -1.2
570,517 + B158DRAFT_0566 0.33 -1.5
570,517 + B158DRAFT_0566 0.33 -0.3
570,517 + B158DRAFT_0566 0.33 -2.2
570,517 + B158DRAFT_0566 0.33 +0.2
570,517 + B158DRAFT_0566 0.33 -1.4
570,525 + B158DRAFT_0566 0.33 -1.5
570,525 - B158DRAFT_0566 0.33 -1.2
570,525 - B158DRAFT_0566 0.33 -1.2
570,525 - B158DRAFT_0566 0.33 -1.1
570,525 - B158DRAFT_0566 0.33 -1.1
570,525 - B158DRAFT_0566 0.33 -1.2
570,525 - B158DRAFT_0566 0.33 -1.8
570,525 - B158DRAFT_0566 0.33 -1.5
570,525 - B158DRAFT_0566 0.33 -1.3
570,525 - B158DRAFT_0566 0.33 -1.1
570,525 - B158DRAFT_0566 0.33 -1.4
570,525 - B158DRAFT_0566 0.33 -1.4
570,537 - B158DRAFT_0566 0.34 -2.2
570,591 + B158DRAFT_0566 0.37 -1.6
570,595 + B158DRAFT_0566 0.37 -1.5
570,595 + B158DRAFT_0566 0.37 -1.4
570,595 + B158DRAFT_0566 0.37 -1.1
570,595 + B158DRAFT_0566 0.37 -1.4
570,595 + B158DRAFT_0566 0.37 -0.7
570,602 + B158DRAFT_0566 0.37 -1.2
570,603 - B158DRAFT_0566 0.37 -1.4
570,603 - B158DRAFT_0566 0.37 -1.0
570,605 - B158DRAFT_0566 0.37 -3.2
570,624 - B158DRAFT_0566 0.38 -1.3

Or see this region's nucleotide sequence