Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0477

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0475 and B158DRAFT_0476 are separated by 179 nucleotidesB158DRAFT_0476 and B158DRAFT_0477 are separated by 88 nucleotidesB158DRAFT_0477 and B158DRAFT_0478 are separated by 134 nucleotides B158DRAFT_0475: B158DRAFT_0475 - Predicted redox protein, regulator of disulfide bond formation, at 475,970 to 476,224 _0475 B158DRAFT_0476: B158DRAFT_0476 - DNA-binding ferritin-like protein (oxidative damage protectant), at 476,404 to 476,880 _0476 B158DRAFT_0477: B158DRAFT_0477 - diguanylate cyclase (GGDEF) domain, at 476,969 to 478,843 _0477 B158DRAFT_0478: B158DRAFT_0478 - Imidazolonepropionase and related amidohydrolases, at 478,978 to 482,184 _0478 Position (kb) 476 477 478 479Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 475.970 kb on + strandat 476.374 kb on - strandat 476.461 kb on + strand, within B158DRAFT_0476at 476.461 kb on + strand, within B158DRAFT_0476at 476.461 kb on + strand, within B158DRAFT_0476at 476.461 kb on + strand, within B158DRAFT_0476at 476.469 kb on - strand, within B158DRAFT_0476at 476.469 kb on - strand, within B158DRAFT_0476at 476.469 kb on - strand, within B158DRAFT_0476at 476.500 kb on - strand, within B158DRAFT_0476at 476.549 kb on + strand, within B158DRAFT_0476at 476.581 kb on + strand, within B158DRAFT_0476at 476.581 kb on + strand, within B158DRAFT_0476at 476.589 kb on - strand, within B158DRAFT_0476at 476.590 kb on - strand, within B158DRAFT_0476at 476.611 kb on - strand, within B158DRAFT_0476at 476.702 kb on + strand, within B158DRAFT_0476at 476.712 kb on - strand, within B158DRAFT_0476at 476.713 kb on + strand, within B158DRAFT_0476at 476.756 kb on - strand, within B158DRAFT_0476at 476.756 kb on - strand, within B158DRAFT_0476at 476.833 kb on - strandat 476.965 kb on - strandat 476.966 kb on + strandat 477.020 kb on - strandat 477.020 kb on - strandat 477.057 kb on - strandat 477.077 kb on - strandat 477.077 kb on - strandat 477.082 kb on - strandat 477.082 kb on - strandat 477.082 kb on - strandat 477.091 kb on + strandat 477.117 kb on - strandat 477.163 kb on + strand, within B158DRAFT_0477at 477.166 kb on - strand, within B158DRAFT_0477at 477.178 kb on - strand, within B158DRAFT_0477at 477.188 kb on + strand, within B158DRAFT_0477at 477.294 kb on - strand, within B158DRAFT_0477at 477.294 kb on - strand, within B158DRAFT_0477at 477.318 kb on - strand, within B158DRAFT_0477at 477.330 kb on - strand, within B158DRAFT_0477at 477.355 kb on + strand, within B158DRAFT_0477at 477.355 kb on + strand, within B158DRAFT_0477at 477.370 kb on + strand, within B158DRAFT_0477at 477.370 kb on + strand, within B158DRAFT_0477at 477.370 kb on + strand, within B158DRAFT_0477at 477.510 kb on - strand, within B158DRAFT_0477at 477.547 kb on - strand, within B158DRAFT_0477at 477.581 kb on + strand, within B158DRAFT_0477at 477.581 kb on + strand, within B158DRAFT_0477at 477.581 kb on + strand, within B158DRAFT_0477at 477.581 kb on + strand, within B158DRAFT_0477at 477.581 kb on + strand, within B158DRAFT_0477at 477.581 kb on + strand, within B158DRAFT_0477at 477.581 kb on + strand, within B158DRAFT_0477at 477.581 kb on + strand, within B158DRAFT_0477at 477.581 kb on + strand, within B158DRAFT_0477at 477.589 kb on - strand, within B158DRAFT_0477at 477.589 kb on - strand, within B158DRAFT_0477at 477.589 kb on - strand, within B158DRAFT_0477at 477.589 kb on - strand, within B158DRAFT_0477at 477.589 kb on - strand, within B158DRAFT_0477at 477.589 kb on - strand, within B158DRAFT_0477at 477.589 kb on - strand, within B158DRAFT_0477at 477.646 kb on - strand, within B158DRAFT_0477at 477.695 kb on + strand, within B158DRAFT_0477at 477.720 kb on + strand, within B158DRAFT_0477at 477.720 kb on + strand, within B158DRAFT_0477at 477.720 kb on + strand, within B158DRAFT_0477at 477.720 kb on + strand, within B158DRAFT_0477at 477.720 kb on + strand, within B158DRAFT_0477at 477.720 kb on + strand, within B158DRAFT_0477at 477.728 kb on - strand, within B158DRAFT_0477at 477.728 kb on - strand, within B158DRAFT_0477at 477.728 kb on - strand, within B158DRAFT_0477at 477.739 kb on + strand, within B158DRAFT_0477at 477.739 kb on + strand, within B158DRAFT_0477at 477.739 kb on + strand, within B158DRAFT_0477at 477.742 kb on + strand, within B158DRAFT_0477at 477.747 kb on - strand, within B158DRAFT_0477at 477.747 kb on - strand, within B158DRAFT_0477at 477.751 kb on + strand, within B158DRAFT_0477at 477.759 kb on - strand, within B158DRAFT_0477at 477.759 kb on - strand, within B158DRAFT_0477at 477.773 kb on + strand, within B158DRAFT_0477at 477.773 kb on + strand, within B158DRAFT_0477at 477.793 kb on + strand, within B158DRAFT_0477at 477.854 kb on + strand, within B158DRAFT_0477at 477.878 kb on + strand, within B158DRAFT_0477at 477.886 kb on - strand, within B158DRAFT_0477at 478.036 kb on + strand, within B158DRAFT_0477at 478.044 kb on - strand, within B158DRAFT_0477at 478.067 kb on - strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.115 kb on + strand, within B158DRAFT_0477at 478.123 kb on - strand, within B158DRAFT_0477at 478.123 kb on - strand, within B158DRAFT_0477at 478.123 kb on - strand, within B158DRAFT_0477at 478.123 kb on - strand, within B158DRAFT_0477at 478.173 kb on + strand, within B158DRAFT_0477at 478.173 kb on + strand, within B158DRAFT_0477at 478.227 kb on + strand, within B158DRAFT_0477at 478.258 kb on - strand, within B158DRAFT_0477at 478.275 kb on + strand, within B158DRAFT_0477at 478.275 kb on - strand, within B158DRAFT_0477at 478.316 kb on + strand, within B158DRAFT_0477at 478.316 kb on + strand, within B158DRAFT_0477at 478.324 kb on - strand, within B158DRAFT_0477at 478.330 kb on + strand, within B158DRAFT_0477at 478.382 kb on - strand, within B158DRAFT_0477at 478.432 kb on + strand, within B158DRAFT_0477at 478.434 kb on + strand, within B158DRAFT_0477at 478.440 kb on - strand, within B158DRAFT_0477at 478.440 kb on - strand, within B158DRAFT_0477at 478.440 kb on - strand, within B158DRAFT_0477at 478.545 kb on - strand, within B158DRAFT_0477at 478.558 kb on - strand, within B158DRAFT_0477at 478.614 kb on - strand, within B158DRAFT_0477at 478.676 kb on + strandat 478.684 kb on - strandat 478.737 kb on + strandat 478.745 kb on - strandat 478.745 kb on - strandat 478.776 kb on - strandat 478.794 kb on + strandat 478.835 kb on - strandat 478.843 kb on + strandat 478.851 kb on - strandat 478.851 kb on - strandat 478.851 kb on - strandat 478.975 kb on + strandat 479.018 kb on - strandat 479.032 kb on + strandat 479.040 kb on - strandat 479.040 kb on - strandat 479.042 kb on + strandat 479.050 kb on - strandat 479.050 kb on - strandat 479.069 kb on + strandat 479.077 kb on - strandat 479.077 kb on - strandat 479.084 kb on - strandat 479.084 kb on - strandat 479.145 kb on + strandat 479.161 kb on - strandat 479.201 kb on - strandat 479.214 kb on - strandat 479.227 kb on + strandat 479.245 kb on + strandat 479.281 kb on - strandat 479.304 kb on - strand, within B158DRAFT_0478at 479.312 kb on - strand, within B158DRAFT_0478at 479.312 kb on - strand, within B158DRAFT_0478at 479.312 kb on - strand, within B158DRAFT_0478at 479.312 kb on - strand, within B158DRAFT_0478at 479.312 kb on - strand, within B158DRAFT_0478at 479.333 kb on - strand, within B158DRAFT_0478at 479.335 kb on + strand, within B158DRAFT_0478at 479.337 kb on + strand, within B158DRAFT_0478at 479.337 kb on + strand, within B158DRAFT_0478at 479.337 kb on + strand, within B158DRAFT_0478at 479.345 kb on - strand, within B158DRAFT_0478at 479.373 kb on + strand, within B158DRAFT_0478at 479.386 kb on - strand, within B158DRAFT_0478at 479.386 kb on - strand, within B158DRAFT_0478at 479.426 kb on - strand, within B158DRAFT_0478at 479.476 kb on - strand, within B158DRAFT_0478at 479.501 kb on + strand, within B158DRAFT_0478at 479.508 kb on + strand, within B158DRAFT_0478at 479.525 kb on - strand, within B158DRAFT_0478at 479.666 kb on - strand, within B158DRAFT_0478at 479.681 kb on + strand, within B158DRAFT_0478at 479.681 kb on + strand, within B158DRAFT_0478at 479.689 kb on - strand, within B158DRAFT_0478at 479.750 kb on + strand, within B158DRAFT_0478at 479.758 kb on - strand, within B158DRAFT_0478at 479.759 kb on + strand, within B158DRAFT_0478at 479.767 kb on - strand, within B158DRAFT_0478at 479.814 kb on + strand, within B158DRAFT_0478at 479.814 kb on + strand, within B158DRAFT_0478at 479.817 kb on - strand, within B158DRAFT_0478at 479.822 kb on - strand, within B158DRAFT_0478at 479.822 kb on - strand, within B158DRAFT_0478at 479.822 kb on - strand, within B158DRAFT_0478at 479.822 kb on - strand, within B158DRAFT_0478

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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475,970 + +0.1
476,374 - -2.3
476,461 + B158DRAFT_0476 0.12 -4.1
476,461 + B158DRAFT_0476 0.12 -2.7
476,461 + B158DRAFT_0476 0.12 -2.7
476,461 + B158DRAFT_0476 0.12 -5.0
476,469 - B158DRAFT_0476 0.14 -3.2
476,469 - B158DRAFT_0476 0.14 -3.1
476,469 - B158DRAFT_0476 0.14 -2.9
476,500 - B158DRAFT_0476 0.20 -1.7
476,549 + B158DRAFT_0476 0.30 -3.1
476,581 + B158DRAFT_0476 0.37 -4.0
476,581 + B158DRAFT_0476 0.37 -2.7
476,589 - B158DRAFT_0476 0.39 -4.7
476,590 - B158DRAFT_0476 0.39 -3.0
476,611 - B158DRAFT_0476 0.43 -3.3
476,702 + B158DRAFT_0476 0.62 -2.7
476,712 - B158DRAFT_0476 0.65 -3.6
476,713 + B158DRAFT_0476 0.65 -3.2
476,756 - B158DRAFT_0476 0.74 -4.4
476,756 - B158DRAFT_0476 0.74 -2.9
476,833 - -5.2
476,965 - -0.2
476,966 + -0.6
477,020 - +1.5
477,020 - +0.2
477,057 - +0.2
477,077 - +0.3
477,077 - -0.1
477,082 - -0.1
477,082 - -0.0
477,082 - -0.3
477,091 + -0.0
477,117 - -0.6
477,163 + B158DRAFT_0477 0.10 -0.3
477,166 - B158DRAFT_0477 0.11 -1.3
477,178 - B158DRAFT_0477 0.11 +0.8
477,188 + B158DRAFT_0477 0.12 +0.1
477,294 - B158DRAFT_0477 0.17 +0.3
477,294 - B158DRAFT_0477 0.17 -0.3
477,318 - B158DRAFT_0477 0.19 -1.7
477,330 - B158DRAFT_0477 0.19 +0.2
477,355 + B158DRAFT_0477 0.21 +0.2
477,355 + B158DRAFT_0477 0.21 -0.4
477,370 + B158DRAFT_0477 0.21 +0.2
477,370 + B158DRAFT_0477 0.21 +0.5
477,370 + B158DRAFT_0477 0.21 -0.1
477,510 - B158DRAFT_0477 0.29 -0.4
477,547 - B158DRAFT_0477 0.31 +0.1
477,581 + B158DRAFT_0477 0.33 -0.4
477,581 + B158DRAFT_0477 0.33 -1.0
477,581 + B158DRAFT_0477 0.33 +0.0
477,581 + B158DRAFT_0477 0.33 +0.2
477,581 + B158DRAFT_0477 0.33 -0.0
477,581 + B158DRAFT_0477 0.33 -0.4
477,581 + B158DRAFT_0477 0.33 +0.3
477,581 + B158DRAFT_0477 0.33 -0.3
477,581 + B158DRAFT_0477 0.33 +0.5
477,589 - B158DRAFT_0477 0.33 -0.8
477,589 - B158DRAFT_0477 0.33 -0.0
477,589 - B158DRAFT_0477 0.33 +1.1
477,589 - B158DRAFT_0477 0.33 -0.3
477,589 - B158DRAFT_0477 0.33 -0.6
477,589 - B158DRAFT_0477 0.33 -0.6
477,589 - B158DRAFT_0477 0.33 -0.1
477,646 - B158DRAFT_0477 0.36 -0.9
477,695 + B158DRAFT_0477 0.39 -0.2
477,720 + B158DRAFT_0477 0.40 -0.6
477,720 + B158DRAFT_0477 0.40 -0.7
477,720 + B158DRAFT_0477 0.40 +0.6
477,720 + B158DRAFT_0477 0.40 -0.2
477,720 + B158DRAFT_0477 0.40 -0.3
477,720 + B158DRAFT_0477 0.40 +0.1
477,728 - B158DRAFT_0477 0.40 -0.4
477,728 - B158DRAFT_0477 0.40 -0.7
477,728 - B158DRAFT_0477 0.40 +0.9
477,739 + B158DRAFT_0477 0.41 -0.4
477,739 + B158DRAFT_0477 0.41 -0.7
477,739 + B158DRAFT_0477 0.41 -0.3
477,742 + B158DRAFT_0477 0.41 +0.5
477,747 - B158DRAFT_0477 0.41 +0.1
477,747 - B158DRAFT_0477 0.41 -0.3
477,751 + B158DRAFT_0477 0.42 -0.1
477,759 - B158DRAFT_0477 0.42 -0.7
477,759 - B158DRAFT_0477 0.42 +0.2
477,773 + B158DRAFT_0477 0.43 -0.6
477,773 + B158DRAFT_0477 0.43 -0.3
477,793 + B158DRAFT_0477 0.44 +0.2
477,854 + B158DRAFT_0477 0.47 -0.2
477,878 + B158DRAFT_0477 0.48 -0.1
477,886 - B158DRAFT_0477 0.49 +0.2
478,036 + B158DRAFT_0477 0.57 +0.9
478,044 - B158DRAFT_0477 0.57 +0.1
478,067 - B158DRAFT_0477 0.59 -0.2
478,115 + B158DRAFT_0477 0.61 +0.2
478,115 + B158DRAFT_0477 0.61 -0.2
478,115 + B158DRAFT_0477 0.61 +0.0
478,115 + B158DRAFT_0477 0.61 +0.3
478,115 + B158DRAFT_0477 0.61 +0.5
478,115 + B158DRAFT_0477 0.61 +0.3
478,115 + B158DRAFT_0477 0.61 +0.3
478,115 + B158DRAFT_0477 0.61 +0.1
478,115 + B158DRAFT_0477 0.61 +0.9
478,115 + B158DRAFT_0477 0.61 -0.1
478,115 + B158DRAFT_0477 0.61 -0.0
478,123 - B158DRAFT_0477 0.62 -0.3
478,123 - B158DRAFT_0477 0.62 -0.6
478,123 - B158DRAFT_0477 0.62 +0.2
478,123 - B158DRAFT_0477 0.62 +0.3
478,173 + B158DRAFT_0477 0.64 -0.3
478,173 + B158DRAFT_0477 0.64 -0.3
478,227 + B158DRAFT_0477 0.67 +0.1
478,258 - B158DRAFT_0477 0.69 -0.1
478,275 + B158DRAFT_0477 0.70 -0.6
478,275 - B158DRAFT_0477 0.70 -0.1
478,316 + B158DRAFT_0477 0.72 -0.9
478,316 + B158DRAFT_0477 0.72 -0.5
478,324 - B158DRAFT_0477 0.72 +0.2
478,330 + B158DRAFT_0477 0.73 -0.2
478,382 - B158DRAFT_0477 0.75 -0.1
478,432 + B158DRAFT_0477 0.78 +0.1
478,434 + B158DRAFT_0477 0.78 -0.0
478,440 - B158DRAFT_0477 0.78 -0.5
478,440 - B158DRAFT_0477 0.78 -0.4
478,440 - B158DRAFT_0477 0.78 +0.2
478,545 - B158DRAFT_0477 0.84 -0.8
478,558 - B158DRAFT_0477 0.85 -0.4
478,614 - B158DRAFT_0477 0.88 -0.1
478,676 + -0.8
478,684 - -0.1
478,737 + -0.0
478,745 - +0.9
478,745 - -0.3
478,776 - -0.7
478,794 + -1.5
478,835 - -0.1
478,843 + -0.7
478,851 - -0.3
478,851 - +0.1
478,851 - +0.2
478,975 + -0.4
479,018 - -0.6
479,032 + +1.1
479,040 - +0.3
479,040 - -0.2
479,042 + -0.5
479,050 - -0.5
479,050 - -0.6
479,069 + -0.3
479,077 - -0.8
479,077 - -0.9
479,084 - -0.3
479,084 - -0.9
479,145 + +0.3
479,161 - -0.6
479,201 - -0.4
479,214 - -1.4
479,227 + -0.7
479,245 + +0.1
479,281 - -0.3
479,304 - B158DRAFT_0478 0.10 -0.8
479,312 - B158DRAFT_0478 0.10 -0.5
479,312 - B158DRAFT_0478 0.10 +0.3
479,312 - B158DRAFT_0478 0.10 +0.0
479,312 - B158DRAFT_0478 0.10 -0.6
479,312 - B158DRAFT_0478 0.10 -0.1
479,333 - B158DRAFT_0478 0.11 -0.1
479,335 + B158DRAFT_0478 0.11 -0.0
479,337 + B158DRAFT_0478 0.11 -0.3
479,337 + B158DRAFT_0478 0.11 +0.1
479,337 + B158DRAFT_0478 0.11 -0.0
479,345 - B158DRAFT_0478 0.11 -0.2
479,373 + B158DRAFT_0478 0.12 -1.0
479,386 - B158DRAFT_0478 0.13 +0.2
479,386 - B158DRAFT_0478 0.13 -0.5
479,426 - B158DRAFT_0478 0.14 +0.3
479,476 - B158DRAFT_0478 0.16 +1.3
479,501 + B158DRAFT_0478 0.16 -0.2
479,508 + B158DRAFT_0478 0.17 -0.1
479,525 - B158DRAFT_0478 0.17 +0.6
479,666 - B158DRAFT_0478 0.21 +0.7
479,681 + B158DRAFT_0478 0.22 -0.3
479,681 + B158DRAFT_0478 0.22 -0.4
479,689 - B158DRAFT_0478 0.22 +0.7
479,750 + B158DRAFT_0478 0.24 -0.9
479,758 - B158DRAFT_0478 0.24 -0.3
479,759 + B158DRAFT_0478 0.24 -0.2
479,767 - B158DRAFT_0478 0.25 -0.6
479,814 + B158DRAFT_0478 0.26 -0.1
479,814 + B158DRAFT_0478 0.26 +0.1
479,817 - B158DRAFT_0478 0.26 -0.0
479,822 - B158DRAFT_0478 0.26 +0.3
479,822 - B158DRAFT_0478 0.26 +1.0
479,822 - B158DRAFT_0478 0.26 -0.4
479,822 - B158DRAFT_0478 0.26 -1.0

Or see this region's nucleotide sequence