Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0358

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0357 and B158DRAFT_0358 are separated by 9 nucleotidesB158DRAFT_0358 and B158DRAFT_0359 overlap by 7 nucleotidesB158DRAFT_0359 and B158DRAFT_0360 are separated by 14 nucleotidesB158DRAFT_0360 and B158DRAFT_0361 are separated by 48 nucleotides B158DRAFT_0357: B158DRAFT_0357 - Xaa-Pro aminopeptidase, at 359,889 to 361,208 _0357 B158DRAFT_0358: B158DRAFT_0358 - uncharacterized protein, YigZ family, at 361,218 to 361,871 _0358 B158DRAFT_0359: B158DRAFT_0359 - Uncharacterized protein conserved in bacteria, at 361,865 to 362,230 _0359 B158DRAFT_0360: B158DRAFT_0360 - Uncharacterized protein conserved in bacteria, at 362,245 to 362,487 _0360 B158DRAFT_0361: B158DRAFT_0361 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 362,536 to 364,515 _0361 Position (kb) 361 362Strain fitness (log2 ratio) -3 -2 -1 0 1at 360.221 kb on - strand, within B158DRAFT_0357at 360.221 kb on - strand, within B158DRAFT_0357at 360.274 kb on + strand, within B158DRAFT_0357at 360.274 kb on + strand, within B158DRAFT_0357at 360.282 kb on - strand, within B158DRAFT_0357at 360.320 kb on + strand, within B158DRAFT_0357at 360.328 kb on - strand, within B158DRAFT_0357at 360.425 kb on - strand, within B158DRAFT_0357at 360.425 kb on - strand, within B158DRAFT_0357at 360.508 kb on + strand, within B158DRAFT_0357at 360.522 kb on + strand, within B158DRAFT_0357at 360.524 kb on - strand, within B158DRAFT_0357at 360.610 kb on - strand, within B158DRAFT_0357at 360.696 kb on - strand, within B158DRAFT_0357at 360.758 kb on + strand, within B158DRAFT_0357at 360.758 kb on + strand, within B158DRAFT_0357at 360.758 kb on + strand, within B158DRAFT_0357at 360.758 kb on + strand, within B158DRAFT_0357at 360.758 kb on + strand, within B158DRAFT_0357at 360.758 kb on + strand, within B158DRAFT_0357at 360.766 kb on - strand, within B158DRAFT_0357at 360.766 kb on - strand, within B158DRAFT_0357at 360.766 kb on - strand, within B158DRAFT_0357at 360.766 kb on - strand, within B158DRAFT_0357at 360.766 kb on - strand, within B158DRAFT_0357at 360.766 kb on - strand, within B158DRAFT_0357at 360.766 kb on - strand, within B158DRAFT_0357at 360.776 kb on + strand, within B158DRAFT_0357at 360.784 kb on - strand, within B158DRAFT_0357at 360.864 kb on + strand, within B158DRAFT_0357at 360.886 kb on + strand, within B158DRAFT_0357at 360.894 kb on - strand, within B158DRAFT_0357at 360.894 kb on - strand, within B158DRAFT_0357at 360.904 kb on - strand, within B158DRAFT_0357at 360.912 kb on - strand, within B158DRAFT_0357at 360.930 kb on + strand, within B158DRAFT_0357at 361.018 kb on - strand, within B158DRAFT_0357at 361.043 kb on - strand, within B158DRAFT_0357at 361.064 kb on - strand, within B158DRAFT_0357at 361.118 kb on + strandat 361.118 kb on + strandat 361.118 kb on + strandat 361.126 kb on - strandat 361.126 kb on - strandat 361.150 kb on + strandat 361.155 kb on + strandat 361.173 kb on + strandat 361.197 kb on + strandat 361.228 kb on + strandat 361.228 kb on + strandat 361.236 kb on - strandat 361.260 kb on + strandat 361.268 kb on - strandat 361.268 kb on - strandat 361.268 kb on - strandat 361.270 kb on + strandat 361.273 kb on - strandat 361.278 kb on - strandat 361.332 kb on + strand, within B158DRAFT_0358at 361.335 kb on - strand, within B158DRAFT_0358at 361.341 kb on - strand, within B158DRAFT_0358at 361.383 kb on - strand, within B158DRAFT_0358at 361.397 kb on - strand, within B158DRAFT_0358at 361.431 kb on + strand, within B158DRAFT_0358at 361.468 kb on + strand, within B158DRAFT_0358at 361.520 kb on - strand, within B158DRAFT_0358at 361.580 kb on + strand, within B158DRAFT_0358at 361.590 kb on - strand, within B158DRAFT_0358at 361.593 kb on + strand, within B158DRAFT_0358at 361.595 kb on - strand, within B158DRAFT_0358at 361.598 kb on + strand, within B158DRAFT_0358at 361.715 kb on + strand, within B158DRAFT_0358at 361.715 kb on + strand, within B158DRAFT_0358at 361.782 kb on - strand, within B158DRAFT_0358at 361.785 kb on + strand, within B158DRAFT_0358at 361.785 kb on + strand, within B158DRAFT_0358at 361.793 kb on - strand, within B158DRAFT_0358at 361.793 kb on - strand, within B158DRAFT_0358at 361.842 kb on - strandat 362.062 kb on - strand, within B158DRAFT_0359at 362.382 kb on + strand, within B158DRAFT_0360at 362.560 kb on - strandat 362.574 kb on - strandat 362.643 kb on + strandat 362.651 kb on - strandat 362.740 kb on + strand, within B158DRAFT_0361at 362.748 kb on - strand, within B158DRAFT_0361at 362.748 kb on - strand, within B158DRAFT_0361at 362.748 kb on - strand, within B158DRAFT_0361

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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360,221 - B158DRAFT_0357 0.25 +0.1
360,221 - B158DRAFT_0357 0.25 -0.4
360,274 + B158DRAFT_0357 0.29 +0.3
360,274 + B158DRAFT_0357 0.29 -0.6
360,282 - B158DRAFT_0357 0.30 -0.7
360,320 + B158DRAFT_0357 0.33 -0.6
360,328 - B158DRAFT_0357 0.33 -0.8
360,425 - B158DRAFT_0357 0.41 -1.2
360,425 - B158DRAFT_0357 0.41 -0.7
360,508 + B158DRAFT_0357 0.47 -1.1
360,522 + B158DRAFT_0357 0.48 -1.7
360,524 - B158DRAFT_0357 0.48 -0.1
360,610 - B158DRAFT_0357 0.55 -0.9
360,696 - B158DRAFT_0357 0.61 -0.0
360,758 + B158DRAFT_0357 0.66 -0.1
360,758 + B158DRAFT_0357 0.66 +1.5
360,758 + B158DRAFT_0357 0.66 -0.1
360,758 + B158DRAFT_0357 0.66 -0.9
360,758 + B158DRAFT_0357 0.66 -0.5
360,758 + B158DRAFT_0357 0.66 -0.7
360,766 - B158DRAFT_0357 0.66 +0.5
360,766 - B158DRAFT_0357 0.66 -1.4
360,766 - B158DRAFT_0357 0.66 -0.1
360,766 - B158DRAFT_0357 0.66 -0.4
360,766 - B158DRAFT_0357 0.66 +0.3
360,766 - B158DRAFT_0357 0.66 -0.4
360,766 - B158DRAFT_0357 0.66 -0.2
360,776 + B158DRAFT_0357 0.67 -1.2
360,784 - B158DRAFT_0357 0.68 -0.8
360,864 + B158DRAFT_0357 0.74 -0.3
360,886 + B158DRAFT_0357 0.76 -1.1
360,894 - B158DRAFT_0357 0.76 -2.3
360,894 - B158DRAFT_0357 0.76 +0.1
360,904 - B158DRAFT_0357 0.77 -0.2
360,912 - B158DRAFT_0357 0.78 -0.4
360,930 + B158DRAFT_0357 0.79 -2.1
361,018 - B158DRAFT_0357 0.86 +0.2
361,043 - B158DRAFT_0357 0.87 -1.1
361,064 - B158DRAFT_0357 0.89 -1.0
361,118 + +0.1
361,118 + -0.3
361,118 + -0.3
361,126 - -0.4
361,126 - +0.4
361,150 + +0.4
361,155 + +0.1
361,173 + +0.5
361,197 + -0.0
361,228 + -0.4
361,228 + -0.4
361,236 - +0.2
361,260 + +0.2
361,268 - +0.5
361,268 - -1.3
361,268 - -0.0
361,270 + -1.3
361,273 - -0.1
361,278 - -0.2
361,332 + B158DRAFT_0358 0.17 -0.5
361,335 - B158DRAFT_0358 0.18 -0.1
361,341 - B158DRAFT_0358 0.19 +0.4
361,383 - B158DRAFT_0358 0.25 -0.3
361,397 - B158DRAFT_0358 0.27 +0.5
361,431 + B158DRAFT_0358 0.33 -0.1
361,468 + B158DRAFT_0358 0.38 -0.9
361,520 - B158DRAFT_0358 0.46 -0.1
361,580 + B158DRAFT_0358 0.55 +0.1
361,590 - B158DRAFT_0358 0.57 +0.5
361,593 + B158DRAFT_0358 0.57 -0.0
361,595 - B158DRAFT_0358 0.58 -0.1
361,598 + B158DRAFT_0358 0.58 -0.7
361,715 + B158DRAFT_0358 0.76 +0.0
361,715 + B158DRAFT_0358 0.76 +0.1
361,782 - B158DRAFT_0358 0.86 -2.9
361,785 + B158DRAFT_0358 0.87 -1.2
361,785 + B158DRAFT_0358 0.87 -0.4
361,793 - B158DRAFT_0358 0.88 -1.4
361,793 - B158DRAFT_0358 0.88 -0.9
361,842 - +0.4
362,062 - B158DRAFT_0359 0.54 -1.6
362,382 + B158DRAFT_0360 0.56 -1.6
362,560 - -0.0
362,574 - +0.2
362,643 + -0.2
362,651 - +0.2
362,740 + B158DRAFT_0361 0.10 +0.4
362,748 - B158DRAFT_0361 0.11 -0.1
362,748 - B158DRAFT_0361 0.11 -0.1
362,748 - B158DRAFT_0361 0.11 +0.3

Or see this region's nucleotide sequence