Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0324

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0322 and B158DRAFT_0323 are separated by 29 nucleotidesB158DRAFT_0323 and B158DRAFT_0324 are separated by 27 nucleotidesB158DRAFT_0324 and B158DRAFT_0325 are separated by 89 nucleotides B158DRAFT_0322: B158DRAFT_0322 - hypothetical protein, at 327,059 to 328,204 _0322 B158DRAFT_0323: B158DRAFT_0323 - Protocatechuate 3,4-dioxygenase beta subunit, at 328,234 to 328,830 _0323 B158DRAFT_0324: B158DRAFT_0324 - Cytochrome B561, at 328,858 to 329,445 _0324 B158DRAFT_0325: B158DRAFT_0325 - transcriptional regulator, LytTR family, at 329,535 to 330,401 _0325 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1at 327.919 kb on - strand, within B158DRAFT_0322at 328.008 kb on - strand, within B158DRAFT_0322at 328.067 kb on + strand, within B158DRAFT_0322at 328.091 kb on - strandat 328.155 kb on - strandat 328.318 kb on - strand, within B158DRAFT_0323at 328.328 kb on - strand, within B158DRAFT_0323at 328.329 kb on + strand, within B158DRAFT_0323at 328.339 kb on - strand, within B158DRAFT_0323at 328.356 kb on + strand, within B158DRAFT_0323at 328.356 kb on + strand, within B158DRAFT_0323at 328.395 kb on + strand, within B158DRAFT_0323at 328.464 kb on - strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.469 kb on - strand, within B158DRAFT_0323at 328.472 kb on + strand, within B158DRAFT_0323at 328.472 kb on + strand, within B158DRAFT_0323at 328.473 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.478 kb on + strand, within B158DRAFT_0323at 328.479 kb on + strand, within B158DRAFT_0323at 328.480 kb on - strand, within B158DRAFT_0323at 328.516 kb on - strand, within B158DRAFT_0323at 328.529 kb on - strand, within B158DRAFT_0323at 328.540 kb on + strand, within B158DRAFT_0323at 328.548 kb on - strand, within B158DRAFT_0323at 328.557 kb on - strand, within B158DRAFT_0323at 328.599 kb on - strand, within B158DRAFT_0323at 328.662 kb on + strand, within B158DRAFT_0323at 328.738 kb on + strand, within B158DRAFT_0323at 328.746 kb on - strand, within B158DRAFT_0323at 328.746 kb on - strand, within B158DRAFT_0323at 328.746 kb on - strand, within B158DRAFT_0323at 328.746 kb on - strand, within B158DRAFT_0323at 328.820 kb on + strandat 328.963 kb on + strand, within B158DRAFT_0324at 328.973 kb on - strand, within B158DRAFT_0324at 329.007 kb on + strand, within B158DRAFT_0324at 329.007 kb on + strand, within B158DRAFT_0324at 329.029 kb on - strand, within B158DRAFT_0324at 329.116 kb on + strand, within B158DRAFT_0324at 329.125 kb on + strand, within B158DRAFT_0324at 329.164 kb on + strand, within B158DRAFT_0324at 329.197 kb on + strand, within B158DRAFT_0324at 329.205 kb on - strand, within B158DRAFT_0324at 329.274 kb on - strand, within B158DRAFT_0324at 329.287 kb on - strand, within B158DRAFT_0324at 329.297 kb on - strand, within B158DRAFT_0324at 329.297 kb on - strand, within B158DRAFT_0324at 329.376 kb on + strand, within B158DRAFT_0324at 329.442 kb on - strandat 329.533 kb on + strandat 329.533 kb on - strandat 329.539 kb on + strandat 329.541 kb on - strandat 329.541 kb on - strandat 329.547 kb on - strandat 329.626 kb on - strand, within B158DRAFT_0325at 329.631 kb on + strand, within B158DRAFT_0325at 329.704 kb on + strand, within B158DRAFT_0325at 330.083 kb on - strand, within B158DRAFT_0325at 330.138 kb on - strand, within B158DRAFT_0325at 330.228 kb on - strand, within B158DRAFT_0325at 330.228 kb on - strand, within B158DRAFT_0325at 330.256 kb on + strand, within B158DRAFT_0325at 330.279 kb on - strand, within B158DRAFT_0325at 330.341 kb on - strandat 330.435 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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327,919 - B158DRAFT_0322 0.75 -0.3
328,008 - B158DRAFT_0322 0.83 -1.4
328,067 + B158DRAFT_0322 0.88 -0.4
328,091 - -0.1
328,155 - -0.1
328,318 - B158DRAFT_0323 0.14 +0.5
328,328 - B158DRAFT_0323 0.16 -0.1
328,329 + B158DRAFT_0323 0.16 -0.1
328,339 - B158DRAFT_0323 0.18 -0.0
328,356 + B158DRAFT_0323 0.20 -0.3
328,356 + B158DRAFT_0323 0.20 -0.1
328,395 + B158DRAFT_0323 0.27 +0.9
328,464 - B158DRAFT_0323 0.39 +0.3
328,466 + B158DRAFT_0323 0.39 -0.9
328,466 + B158DRAFT_0323 0.39 +0.1
328,466 + B158DRAFT_0323 0.39 -1.0
328,466 + B158DRAFT_0323 0.39 +0.4
328,466 + B158DRAFT_0323 0.39 -0.9
328,466 + B158DRAFT_0323 0.39 +0.0
328,466 + B158DRAFT_0323 0.39 -1.1
328,466 + B158DRAFT_0323 0.39 +0.1
328,469 - B158DRAFT_0323 0.39 +0.0
328,472 + B158DRAFT_0323 0.40 +0.7
328,472 + B158DRAFT_0323 0.40 +0.3
328,473 - B158DRAFT_0323 0.40 +0.4
328,474 - B158DRAFT_0323 0.40 +0.7
328,474 - B158DRAFT_0323 0.40 -0.4
328,474 - B158DRAFT_0323 0.40 +0.6
328,474 - B158DRAFT_0323 0.40 -0.0
328,474 - B158DRAFT_0323 0.40 +0.3
328,474 - B158DRAFT_0323 0.40 +0.2
328,474 - B158DRAFT_0323 0.40 -0.3
328,478 + B158DRAFT_0323 0.41 -0.4
328,479 + B158DRAFT_0323 0.41 -0.6
328,480 - B158DRAFT_0323 0.41 -2.1
328,516 - B158DRAFT_0323 0.47 -0.1
328,529 - B158DRAFT_0323 0.49 -1.0
328,540 + B158DRAFT_0323 0.51 +0.2
328,548 - B158DRAFT_0323 0.53 -0.3
328,557 - B158DRAFT_0323 0.54 -0.5
328,599 - B158DRAFT_0323 0.61 +0.2
328,662 + B158DRAFT_0323 0.72 -0.3
328,738 + B158DRAFT_0323 0.84 +0.3
328,746 - B158DRAFT_0323 0.86 -0.4
328,746 - B158DRAFT_0323 0.86 +0.1
328,746 - B158DRAFT_0323 0.86 -1.0
328,746 - B158DRAFT_0323 0.86 -0.2
328,820 + +0.2
328,963 + B158DRAFT_0324 0.18 -0.8
328,973 - B158DRAFT_0324 0.20 +0.1
329,007 + B158DRAFT_0324 0.25 -0.1
329,007 + B158DRAFT_0324 0.25 -0.6
329,029 - B158DRAFT_0324 0.29 +0.4
329,116 + B158DRAFT_0324 0.44 -0.4
329,125 + B158DRAFT_0324 0.45 -0.5
329,164 + B158DRAFT_0324 0.52 +0.1
329,197 + B158DRAFT_0324 0.58 -0.1
329,205 - B158DRAFT_0324 0.59 +0.3
329,274 - B158DRAFT_0324 0.71 +0.3
329,287 - B158DRAFT_0324 0.73 -0.1
329,297 - B158DRAFT_0324 0.75 -0.5
329,297 - B158DRAFT_0324 0.75 -0.9
329,376 + B158DRAFT_0324 0.88 -0.0
329,442 - +0.1
329,533 + -0.3
329,533 - -0.5
329,539 + -0.0
329,541 - +0.0
329,541 - -0.3
329,547 - -1.8
329,626 - B158DRAFT_0325 0.10 -0.2
329,631 + B158DRAFT_0325 0.11 -0.6
329,704 + B158DRAFT_0325 0.19 -0.9
330,083 - B158DRAFT_0325 0.63 -0.4
330,138 - B158DRAFT_0325 0.70 -0.3
330,228 - B158DRAFT_0325 0.80 +0.1
330,228 - B158DRAFT_0325 0.80 -0.7
330,256 + B158DRAFT_0325 0.83 -0.0
330,279 - B158DRAFT_0325 0.86 +0.6
330,341 - -0.2
330,435 - -0.4

Or see this region's nucleotide sequence