Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0164

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0163 and B158DRAFT_0164 are separated by 306 nucleotidesB158DRAFT_0164 and B158DRAFT_0165 overlap by 4 nucleotidesB158DRAFT_0165 and B158DRAFT_0166 are separated by 62 nucleotides B158DRAFT_0163: B158DRAFT_0163 - Protein of unknown function (DUF3426)., at 160,188 to 160,949 _0163 B158DRAFT_0164: B158DRAFT_0164 - tRNA-U20-dihydrouridine synthase, at 161,256 to 162,236 _0164 B158DRAFT_0165: B158DRAFT_0165 - Factor for inversion stimulation Fis, transcriptional activator, at 162,233 to 162,538 _0165 B158DRAFT_0166: B158DRAFT_0166 - IMP cyclohydrolase (EC 3.5.4.10)/phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 162,601 to 164,166 _0166 Position (kb) 161 162 163Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 160.400 kb on + strand, within B158DRAFT_0163at 160.405 kb on + strand, within B158DRAFT_0163at 160.405 kb on + strand, within B158DRAFT_0163at 160.405 kb on + strand, within B158DRAFT_0163at 160.405 kb on + strand, within B158DRAFT_0163at 160.405 kb on + strand, within B158DRAFT_0163at 160.405 kb on + strand, within B158DRAFT_0163at 160.405 kb on + strand, within B158DRAFT_0163at 160.405 kb on + strand, within B158DRAFT_0163at 160.405 kb on + strand, within B158DRAFT_0163at 160.408 kb on - strand, within B158DRAFT_0163at 160.413 kb on - strand, within B158DRAFT_0163at 160.413 kb on - strand, within B158DRAFT_0163at 160.413 kb on - strand, within B158DRAFT_0163at 160.413 kb on - strand, within B158DRAFT_0163at 160.413 kb on - strand, within B158DRAFT_0163at 160.413 kb on - strand, within B158DRAFT_0163at 160.413 kb on - strandat 160.458 kb on + strand, within B158DRAFT_0163at 160.463 kb on + strand, within B158DRAFT_0163at 160.466 kb on - strand, within B158DRAFT_0163at 160.466 kb on - strand, within B158DRAFT_0163at 160.468 kb on + strand, within B158DRAFT_0163at 160.476 kb on - strand, within B158DRAFT_0163at 160.476 kb on - strand, within B158DRAFT_0163at 160.513 kb on + strand, within B158DRAFT_0163at 160.521 kb on - strand, within B158DRAFT_0163at 160.521 kb on - strand, within B158DRAFT_0163at 160.551 kb on + strand, within B158DRAFT_0163at 160.559 kb on + strand, within B158DRAFT_0163at 160.564 kb on + strand, within B158DRAFT_0163at 160.574 kb on + strand, within B158DRAFT_0163at 160.582 kb on - strand, within B158DRAFT_0163at 160.628 kb on - strand, within B158DRAFT_0163at 160.628 kb on - strand, within B158DRAFT_0163at 160.628 kb on - strand, within B158DRAFT_0163at 160.630 kb on + strand, within B158DRAFT_0163at 160.630 kb on + strand, within B158DRAFT_0163at 160.630 kb on + strand, within B158DRAFT_0163at 160.630 kb on + strand, within B158DRAFT_0163at 160.630 kb on + strand, within B158DRAFT_0163at 160.630 kb on + strand, within B158DRAFT_0163at 160.638 kb on - strand, within B158DRAFT_0163at 160.638 kb on - strand, within B158DRAFT_0163at 160.638 kb on - strand, within B158DRAFT_0163at 160.638 kb on - strand, within B158DRAFT_0163at 160.638 kb on - strand, within B158DRAFT_0163at 160.638 kb on - strand, within B158DRAFT_0163at 160.725 kb on - strand, within B158DRAFT_0163at 160.730 kb on - strand, within B158DRAFT_0163at 160.784 kb on + strand, within B158DRAFT_0163at 160.814 kb on + strand, within B158DRAFT_0163at 160.819 kb on + strand, within B158DRAFT_0163at 160.819 kb on + strand, within B158DRAFT_0163at 160.819 kb on + strand, within B158DRAFT_0163at 160.822 kb on - strand, within B158DRAFT_0163at 160.824 kb on + strand, within B158DRAFT_0163at 160.824 kb on + strand, within B158DRAFT_0163at 160.827 kb on - strand, within B158DRAFT_0163at 160.829 kb on + strand, within B158DRAFT_0163at 160.832 kb on - strand, within B158DRAFT_0163at 160.854 kb on + strand, within B158DRAFT_0163at 160.854 kb on + strand, within B158DRAFT_0163at 160.862 kb on - strand, within B158DRAFT_0163at 160.862 kb on - strand, within B158DRAFT_0163at 160.862 kb on - strand, within B158DRAFT_0163at 160.881 kb on - strandat 160.906 kb on + strandat 160.906 kb on + strandat 160.906 kb on + strandat 160.906 kb on + strandat 160.906 kb on + strandat 160.906 kb on + strandat 160.906 kb on + strandat 160.914 kb on - strandat 160.914 kb on - strandat 160.914 kb on - strandat 160.914 kb on - strandat 160.914 kb on - strandat 160.914 kb on - strandat 160.914 kb on - strandat 160.914 kb on - strandat 160.916 kb on + strandat 160.924 kb on - strandat 160.985 kb on - strandat 160.990 kb on + strandat 160.996 kb on + strandat 161.017 kb on + strandat 161.044 kb on + strandat 161.044 kb on + strandat 161.044 kb on + strandat 161.044 kb on + strandat 161.044 kb on + strandat 161.044 kb on + strandat 161.052 kb on - strandat 161.052 kb on - strandat 161.052 kb on - strandat 161.052 kb on - strandat 161.052 kb on - strandat 161.052 kb on - strandat 161.052 kb on - strandat 161.088 kb on + strandat 161.093 kb on + strandat 161.096 kb on - strandat 161.132 kb on + strandat 161.133 kb on + strandat 161.133 kb on + strandat 161.140 kb on - strandat 161.141 kb on - strandat 161.261 kb on + strandat 161.358 kb on + strand, within B158DRAFT_0164at 161.358 kb on + strand, within B158DRAFT_0164at 161.460 kb on + strand, within B158DRAFT_0164at 161.492 kb on + strand, within B158DRAFT_0164at 161.492 kb on + strand, within B158DRAFT_0164at 161.605 kb on + strand, within B158DRAFT_0164at 161.655 kb on + strand, within B158DRAFT_0164at 161.655 kb on + strand, within B158DRAFT_0164at 161.699 kb on + strand, within B158DRAFT_0164at 161.699 kb on + strand, within B158DRAFT_0164at 161.699 kb on + strand, within B158DRAFT_0164at 161.699 kb on + strand, within B158DRAFT_0164at 161.859 kb on + strand, within B158DRAFT_0164at 161.894 kb on + strand, within B158DRAFT_0164at 161.939 kb on + strand, within B158DRAFT_0164at 161.939 kb on + strand, within B158DRAFT_0164at 161.939 kb on + strand, within B158DRAFT_0164at 161.939 kb on + strand, within B158DRAFT_0164at 161.939 kb on + strand, within B158DRAFT_0164at 161.939 kb on + strand, within B158DRAFT_0164at 161.939 kb on + strand, within B158DRAFT_0164at 161.939 kb on + strand, within B158DRAFT_0164at 161.939 kb on + strand, within B158DRAFT_0164at 162.010 kb on + strand, within B158DRAFT_0164at 162.172 kb on + strandat 162.221 kb on + strandat 162.533 kb on + strandat 162.551 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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160,400 + B158DRAFT_0163 0.28 +0.3
160,405 + B158DRAFT_0163 0.28 +0.3
160,405 + B158DRAFT_0163 0.28 -0.1
160,405 + B158DRAFT_0163 0.28 -0.6
160,405 + B158DRAFT_0163 0.28 +0.3
160,405 + B158DRAFT_0163 0.28 -0.8
160,405 + B158DRAFT_0163 0.28 -0.8
160,405 + B158DRAFT_0163 0.28 +0.3
160,405 + B158DRAFT_0163 0.28 -0.4
160,405 + B158DRAFT_0163 0.28 -0.3
160,408 - B158DRAFT_0163 0.29 -0.5
160,413 - B158DRAFT_0163 0.30 -0.2
160,413 - B158DRAFT_0163 0.30 -0.3
160,413 - B158DRAFT_0163 0.30 -0.5
160,413 - B158DRAFT_0163 0.30 -0.4
160,413 - B158DRAFT_0163 0.30 -0.1
160,413 - B158DRAFT_0163 0.30 -0.2
160,413 - +0.4
160,458 + B158DRAFT_0163 0.35 -0.4
160,463 + B158DRAFT_0163 0.36 -1.0
160,466 - B158DRAFT_0163 0.36 -0.1
160,466 - B158DRAFT_0163 0.36 -0.2
160,468 + B158DRAFT_0163 0.37 -2.1
160,476 - B158DRAFT_0163 0.38 +0.1
160,476 - B158DRAFT_0163 0.38 -0.7
160,513 + B158DRAFT_0163 0.43 -0.1
160,521 - B158DRAFT_0163 0.44 -0.5
160,521 - B158DRAFT_0163 0.44 +0.2
160,551 + B158DRAFT_0163 0.48 -0.0
160,559 + B158DRAFT_0163 0.49 -1.2
160,564 + B158DRAFT_0163 0.49 -0.2
160,574 + B158DRAFT_0163 0.51 +0.2
160,582 - B158DRAFT_0163 0.52 -0.6
160,628 - B158DRAFT_0163 0.58 -0.5
160,628 - B158DRAFT_0163 0.58 -0.6
160,628 - B158DRAFT_0163 0.58 -1.3
160,630 + B158DRAFT_0163 0.58 -0.6
160,630 + B158DRAFT_0163 0.58 -0.5
160,630 + B158DRAFT_0163 0.58 -0.6
160,630 + B158DRAFT_0163 0.58 -0.0
160,630 + B158DRAFT_0163 0.58 -0.8
160,630 + B158DRAFT_0163 0.58 -0.4
160,638 - B158DRAFT_0163 0.59 +0.0
160,638 - B158DRAFT_0163 0.59 -1.2
160,638 - B158DRAFT_0163 0.59 -1.2
160,638 - B158DRAFT_0163 0.59 -0.0
160,638 - B158DRAFT_0163 0.59 -0.3
160,638 - B158DRAFT_0163 0.59 -2.2
160,725 - B158DRAFT_0163 0.70 +0.0
160,730 - B158DRAFT_0163 0.71 -0.4
160,784 + B158DRAFT_0163 0.78 +0.2
160,814 + B158DRAFT_0163 0.82 -0.0
160,819 + B158DRAFT_0163 0.83 -2.5
160,819 + B158DRAFT_0163 0.83 -1.1
160,819 + B158DRAFT_0163 0.83 -0.1
160,822 - B158DRAFT_0163 0.83 +0.1
160,824 + B158DRAFT_0163 0.83 -0.2
160,824 + B158DRAFT_0163 0.83 -0.1
160,827 - B158DRAFT_0163 0.84 -0.0
160,829 + B158DRAFT_0163 0.84 -0.1
160,832 - B158DRAFT_0163 0.85 -0.4
160,854 + B158DRAFT_0163 0.87 -0.5
160,854 + B158DRAFT_0163 0.87 +0.2
160,862 - B158DRAFT_0163 0.88 -0.5
160,862 - B158DRAFT_0163 0.88 -0.7
160,862 - B158DRAFT_0163 0.88 -1.1
160,881 - -1.0
160,906 + -0.2
160,906 + -0.6
160,906 + -0.0
160,906 + +0.0
160,906 + -0.5
160,906 + -0.6
160,906 + -0.2
160,914 - -0.4
160,914 - -0.4
160,914 - -0.7
160,914 - -1.2
160,914 - -0.2
160,914 - +0.8
160,914 - -0.3
160,914 - -0.8
160,916 + +0.6
160,924 - -0.7
160,985 - +0.3
160,990 + -0.8
160,996 + +0.0
161,017 + -0.3
161,044 + -0.2
161,044 + +0.2
161,044 + +0.6
161,044 + +0.6
161,044 + -0.2
161,044 + +0.4
161,052 - +0.5
161,052 - +0.8
161,052 - +0.1
161,052 - -0.4
161,052 - +1.0
161,052 - -0.6
161,052 - +0.4
161,088 + +0.0
161,093 + -0.5
161,096 - +0.1
161,132 + -1.1
161,133 + -0.0
161,133 + +0.2
161,140 - +0.1
161,141 - +0.2
161,261 + -2.5
161,358 + B158DRAFT_0164 0.10 -2.5
161,358 + B158DRAFT_0164 0.10 -4.2
161,460 + B158DRAFT_0164 0.21 -5.0
161,492 + B158DRAFT_0164 0.24 -2.6
161,492 + B158DRAFT_0164 0.24 -3.1
161,605 + B158DRAFT_0164 0.36 -3.5
161,655 + B158DRAFT_0164 0.41 -3.1
161,655 + B158DRAFT_0164 0.41 -4.2
161,699 + B158DRAFT_0164 0.45 -3.2
161,699 + B158DRAFT_0164 0.45 -5.1
161,699 + B158DRAFT_0164 0.45 -2.4
161,699 + B158DRAFT_0164 0.45 -2.7
161,859 + B158DRAFT_0164 0.61 -3.8
161,894 + B158DRAFT_0164 0.65 -2.9
161,939 + B158DRAFT_0164 0.70 -3.2
161,939 + B158DRAFT_0164 0.70 -3.2
161,939 + B158DRAFT_0164 0.70 -4.4
161,939 + B158DRAFT_0164 0.70 -3.9
161,939 + B158DRAFT_0164 0.70 -2.5
161,939 + B158DRAFT_0164 0.70 -3.8
161,939 + B158DRAFT_0164 0.70 -4.9
161,939 + B158DRAFT_0164 0.70 -2.7
161,939 + B158DRAFT_0164 0.70 +0.4
162,010 + B158DRAFT_0164 0.77 -2.6
162,172 + -2.3
162,221 + -2.3
162,533 + -1.2
162,551 + -3.9

Or see this region's nucleotide sequence