Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0136

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0134 and B158DRAFT_0135 are separated by 35 nucleotidesB158DRAFT_0135 and B158DRAFT_0136 are separated by 27 nucleotidesB158DRAFT_0136 and B158DRAFT_0137 are separated by 2 nucleotides B158DRAFT_0134: B158DRAFT_0134 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 132,008 to 132,880 _0134 B158DRAFT_0135: B158DRAFT_0135 - Cytochrome oxidase assembly factor, at 132,916 to 133,485 _0135 B158DRAFT_0136: B158DRAFT_0136 - cytochrome c oxidase, subunit I, at 133,513 to 135,072 _0136 B158DRAFT_0137: B158DRAFT_0137 - cytochrome c oxidase, subunit II, at 135,075 to 136,244 _0137 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1at 132.644 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.758 kb on + strand, within B158DRAFT_0134at 132.766 kb on - strand, within B158DRAFT_0134at 132.767 kb on + strand, within B158DRAFT_0134at 132.767 kb on + strand, within B158DRAFT_0134at 132.886 kb on - strandat 132.890 kb on + strandat 132.898 kb on - strandat 132.908 kb on - strandat 132.908 kb on - strandat 132.908 kb on - strandat 132.908 kb on - strandat 132.913 kb on + strandat 132.965 kb on + strandat 132.965 kb on + strandat 132.965 kb on + strandat 132.965 kb on + strandat 132.973 kb on - strand, within B158DRAFT_0135at 132.973 kb on - strand, within B158DRAFT_0135at 132.973 kb on - strand, within B158DRAFT_0135at 133.011 kb on - strand, within B158DRAFT_0135at 133.011 kb on - strand, within B158DRAFT_0135at 133.073 kb on - strand, within B158DRAFT_0135at 133.147 kb on + strand, within B158DRAFT_0135at 133.155 kb on - strand, within B158DRAFT_0135at 133.199 kb on + strand, within B158DRAFT_0135at 133.205 kb on + strand, within B158DRAFT_0135at 133.206 kb on + strand, within B158DRAFT_0135at 133.207 kb on - strand, within B158DRAFT_0135at 133.317 kb on + strand, within B158DRAFT_0135at 133.317 kb on + strand, within B158DRAFT_0135at 133.325 kb on - strand, within B158DRAFT_0135at 133.410 kb on + strand, within B158DRAFT_0135at 133.440 kb on - strandat 133.483 kb on - strandat 133.506 kb on + strandat 133.575 kb on + strandat 133.583 kb on - strandat 133.584 kb on + strandat 133.640 kb on + strandat 133.669 kb on - strand, within B158DRAFT_0136at 133.669 kb on - strand, within B158DRAFT_0136at 133.680 kb on - strand, within B158DRAFT_0136at 133.692 kb on + strand, within B158DRAFT_0136at 133.700 kb on - strand, within B158DRAFT_0136at 133.762 kb on + strand, within B158DRAFT_0136at 133.913 kb on + strand, within B158DRAFT_0136at 133.918 kb on + strand, within B158DRAFT_0136at 133.921 kb on - strand, within B158DRAFT_0136at 133.926 kb on - strand, within B158DRAFT_0136at 134.001 kb on - strand, within B158DRAFT_0136at 134.106 kb on - strand, within B158DRAFT_0136at 134.131 kb on + strand, within B158DRAFT_0136at 134.170 kb on - strand, within B158DRAFT_0136at 134.441 kb on - strand, within B158DRAFT_0136at 134.491 kb on + strand, within B158DRAFT_0136at 134.643 kb on + strand, within B158DRAFT_0136at 134.651 kb on - strand, within B158DRAFT_0136at 134.835 kb on - strand, within B158DRAFT_0136at 134.879 kb on + strand, within B158DRAFT_0136at 134.880 kb on - strand, within B158DRAFT_0136at 134.887 kb on - strand, within B158DRAFT_0136at 134.914 kb on + strand, within B158DRAFT_0136at 134.922 kb on - strandat 134.998 kb on + strandat 135.000 kb on + strandat 135.013 kb on - strandat 135.068 kb on + strandat 135.222 kb on + strand, within B158DRAFT_0137at 135.224 kb on + strand, within B158DRAFT_0137at 135.230 kb on - strand, within B158DRAFT_0137at 135.240 kb on - strand, within B158DRAFT_0137at 135.267 kb on + strand, within B158DRAFT_0137at 135.267 kb on + strand, within B158DRAFT_0137at 135.275 kb on - strand, within B158DRAFT_0137at 135.309 kb on - strand, within B158DRAFT_0137at 135.321 kb on - strand, within B158DRAFT_0137at 135.326 kb on - strand, within B158DRAFT_0137at 135.336 kb on + strand, within B158DRAFT_0137at 135.354 kb on - strand, within B158DRAFT_0137at 135.375 kb on - strand, within B158DRAFT_0137at 135.379 kb on + strand, within B158DRAFT_0137at 135.387 kb on - strand, within B158DRAFT_0137at 135.421 kb on + strand, within B158DRAFT_0137at 135.438 kb on - strand, within B158DRAFT_0137at 135.509 kb on - strand, within B158DRAFT_0137at 135.519 kb on - strand, within B158DRAFT_0137at 135.521 kb on + strand, within B158DRAFT_0137at 135.521 kb on + strand, within B158DRAFT_0137at 135.521 kb on + strand, within B158DRAFT_0137at 135.521 kb on + strand, within B158DRAFT_0137at 135.524 kb on - strand, within B158DRAFT_0137at 135.529 kb on - strand, within B158DRAFT_0137at 135.529 kb on - strand, within B158DRAFT_0137at 135.529 kb on - strand, within B158DRAFT_0137at 135.529 kb on - strand, within B158DRAFT_0137at 135.642 kb on + strand, within B158DRAFT_0137at 135.643 kb on - strand, within B158DRAFT_0137at 135.644 kb on + strand, within B158DRAFT_0137at 135.649 kb on + strand, within B158DRAFT_0137at 135.650 kb on - strand, within B158DRAFT_0137at 135.887 kb on + strand, within B158DRAFT_0137at 135.999 kb on - strand, within B158DRAFT_0137at 136.071 kb on + strand, within B158DRAFT_0137

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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132,644 + B158DRAFT_0134 0.73 -1.5
132,656 + B158DRAFT_0134 0.74 -0.0
132,656 + B158DRAFT_0134 0.74 -1.5
132,656 + B158DRAFT_0134 0.74 -1.2
132,656 + B158DRAFT_0134 0.74 -1.2
132,656 + B158DRAFT_0134 0.74 -1.6
132,656 + B158DRAFT_0134 0.74 -0.8
132,656 + B158DRAFT_0134 0.74 -0.2
132,656 + B158DRAFT_0134 0.74 -0.7
132,656 + B158DRAFT_0134 0.74 -1.2
132,656 + B158DRAFT_0134 0.74 -0.6
132,664 - B158DRAFT_0134 0.75 -1.2
132,664 - B158DRAFT_0134 0.75 -1.4
132,664 - B158DRAFT_0134 0.75 -1.0
132,664 - B158DRAFT_0134 0.75 -1.2
132,664 - B158DRAFT_0134 0.75 -0.5
132,664 - B158DRAFT_0134 0.75 -0.4
132,664 - B158DRAFT_0134 0.75 -2.2
132,758 + B158DRAFT_0134 0.86 -1.4
132,766 - B158DRAFT_0134 0.87 -0.4
132,767 + B158DRAFT_0134 0.87 -2.0
132,767 + B158DRAFT_0134 0.87 -0.9
132,886 - -0.4
132,890 + -0.4
132,898 - -0.4
132,908 - -1.5
132,908 - -0.2
132,908 - -0.9
132,908 - -0.9
132,913 + -0.6
132,965 + -0.3
132,965 + -0.3
132,965 + -0.7
132,965 + -0.6
132,973 - B158DRAFT_0135 0.10 -0.6
132,973 - B158DRAFT_0135 0.10 -2.2
132,973 - B158DRAFT_0135 0.10 -0.4
133,011 - B158DRAFT_0135 0.17 -0.9
133,011 - B158DRAFT_0135 0.17 -0.9
133,073 - B158DRAFT_0135 0.28 -0.7
133,147 + B158DRAFT_0135 0.41 -0.7
133,155 - B158DRAFT_0135 0.42 -0.1
133,199 + B158DRAFT_0135 0.50 -0.7
133,205 + B158DRAFT_0135 0.51 -0.3
133,206 + B158DRAFT_0135 0.51 -0.4
133,207 - B158DRAFT_0135 0.51 -0.9
133,317 + B158DRAFT_0135 0.70 -0.0
133,317 + B158DRAFT_0135 0.70 -1.9
133,325 - B158DRAFT_0135 0.72 -0.7
133,410 + B158DRAFT_0135 0.87 -1.4
133,440 - -1.2
133,483 - -0.2
133,506 + -2.7
133,575 + -0.6
133,583 - -1.4
133,584 + -1.6
133,640 + -1.3
133,669 - B158DRAFT_0136 0.10 -1.1
133,669 - B158DRAFT_0136 0.10 -1.6
133,680 - B158DRAFT_0136 0.11 -1.1
133,692 + B158DRAFT_0136 0.11 -1.0
133,700 - B158DRAFT_0136 0.12 -0.7
133,762 + B158DRAFT_0136 0.16 -1.3
133,913 + B158DRAFT_0136 0.26 -1.0
133,918 + B158DRAFT_0136 0.26 -0.8
133,921 - B158DRAFT_0136 0.26 -1.3
133,926 - B158DRAFT_0136 0.26 -0.6
134,001 - B158DRAFT_0136 0.31 -1.7
134,106 - B158DRAFT_0136 0.38 -1.0
134,131 + B158DRAFT_0136 0.40 -1.4
134,170 - B158DRAFT_0136 0.42 -1.6
134,441 - B158DRAFT_0136 0.59 -0.9
134,491 + B158DRAFT_0136 0.63 -0.9
134,643 + B158DRAFT_0136 0.72 -1.6
134,651 - B158DRAFT_0136 0.73 -1.2
134,835 - B158DRAFT_0136 0.85 -1.3
134,879 + B158DRAFT_0136 0.88 -1.3
134,880 - B158DRAFT_0136 0.88 -1.7
134,887 - B158DRAFT_0136 0.88 -1.5
134,914 + B158DRAFT_0136 0.90 -2.7
134,922 - -2.3
134,998 + -2.2
135,000 + -1.0
135,013 - -0.2
135,068 + -1.7
135,222 + B158DRAFT_0137 0.13 -3.1
135,224 + B158DRAFT_0137 0.13 -1.0
135,230 - B158DRAFT_0137 0.13 -1.7
135,240 - B158DRAFT_0137 0.14 -1.3
135,267 + B158DRAFT_0137 0.16 -1.3
135,267 + B158DRAFT_0137 0.16 -1.3
135,275 - B158DRAFT_0137 0.17 -1.3
135,309 - B158DRAFT_0137 0.20 -1.0
135,321 - B158DRAFT_0137 0.21 -3.0
135,326 - B158DRAFT_0137 0.21 -0.6
135,336 + B158DRAFT_0137 0.22 -2.6
135,354 - B158DRAFT_0137 0.24 -1.5
135,375 - B158DRAFT_0137 0.26 -0.5
135,379 + B158DRAFT_0137 0.26 -0.9
135,387 - B158DRAFT_0137 0.27 -1.5
135,421 + B158DRAFT_0137 0.30 -0.7
135,438 - B158DRAFT_0137 0.31 -1.6
135,509 - B158DRAFT_0137 0.37 -1.8
135,519 - B158DRAFT_0137 0.38 -2.4
135,521 + B158DRAFT_0137 0.38 -0.7
135,521 + B158DRAFT_0137 0.38 -1.9
135,521 + B158DRAFT_0137 0.38 -1.7
135,521 + B158DRAFT_0137 0.38 -1.7
135,524 - B158DRAFT_0137 0.38 -1.3
135,529 - B158DRAFT_0137 0.39 -2.1
135,529 - B158DRAFT_0137 0.39 -1.8
135,529 - B158DRAFT_0137 0.39 -0.6
135,529 - B158DRAFT_0137 0.39 -1.0
135,642 + B158DRAFT_0137 0.48 -1.1
135,643 - B158DRAFT_0137 0.49 -0.9
135,644 + B158DRAFT_0137 0.49 -1.2
135,649 + B158DRAFT_0137 0.49 -1.6
135,650 - B158DRAFT_0137 0.49 -0.0
135,887 + B158DRAFT_0137 0.69 -0.5
135,999 - B158DRAFT_0137 0.79 -1.3
136,071 + B158DRAFT_0137 0.85 -0.4

Or see this region's nucleotide sequence