Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0122

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0121 and B158DRAFT_0122 are separated by 17 nucleotidesB158DRAFT_0122 and B158DRAFT_0123 are separated by 14 nucleotidesB158DRAFT_0123 and B158DRAFT_0124 are separated by 2 nucleotides B158DRAFT_0121: B158DRAFT_0121 - NADH-quinone oxidoreductase, chain G, at 117,731 to 119,974 _0121 B158DRAFT_0122: B158DRAFT_0122 - NADH-quinone oxidoreductase, F subunit, at 119,992 to 121,287 _0122 B158DRAFT_0123: B158DRAFT_0123 - NADH dehydrogenase subunit E (EC 1.6.5.3), at 121,302 to 121,796 _0123 B158DRAFT_0124: B158DRAFT_0124 - NADH dehydrogenase subunit D (EC 1.6.5.3), at 121,799 to 123,052 _0124 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 119.035 kb on - strand, within B158DRAFT_0121at 119.035 kb on - strand, within B158DRAFT_0121at 119.076 kb on + strand, within B158DRAFT_0121at 119.084 kb on - strand, within B158DRAFT_0121at 119.269 kb on + strand, within B158DRAFT_0121at 119.269 kb on + strand, within B158DRAFT_0121at 119.277 kb on - strand, within B158DRAFT_0121at 119.279 kb on - strand, within B158DRAFT_0121at 119.292 kb on - strand, within B158DRAFT_0121at 119.308 kb on - strand, within B158DRAFT_0121at 119.316 kb on + strand, within B158DRAFT_0121at 119.316 kb on + strand, within B158DRAFT_0121at 119.324 kb on - strand, within B158DRAFT_0121at 119.328 kb on + strand, within B158DRAFT_0121at 119.336 kb on - strand, within B158DRAFT_0121at 119.352 kb on - strand, within B158DRAFT_0121at 119.369 kb on + strand, within B158DRAFT_0121at 119.370 kb on - strand, within B158DRAFT_0121at 119.377 kb on - strand, within B158DRAFT_0121at 119.475 kb on + strand, within B158DRAFT_0121at 119.538 kb on - strand, within B158DRAFT_0121at 119.567 kb on + strand, within B158DRAFT_0121at 119.568 kb on + strand, within B158DRAFT_0121at 119.576 kb on - strand, within B158DRAFT_0121at 119.668 kb on + strand, within B158DRAFT_0121at 119.687 kb on - strand, within B158DRAFT_0121at 119.694 kb on + strand, within B158DRAFT_0121at 119.723 kb on + strand, within B158DRAFT_0121at 119.731 kb on - strand, within B158DRAFT_0121at 119.731 kb on - strand, within B158DRAFT_0121at 119.814 kb on + strandat 119.920 kb on + strandat 119.928 kb on - strandat 119.929 kb on - strandat 120.009 kb on + strandat 120.017 kb on + strandat 120.115 kb on - strandat 120.115 kb on - strandat 120.178 kb on + strand, within B158DRAFT_0122at 120.180 kb on + strand, within B158DRAFT_0122at 120.184 kb on + strand, within B158DRAFT_0122at 120.226 kb on + strand, within B158DRAFT_0122at 120.226 kb on + strand, within B158DRAFT_0122at 120.226 kb on + strand, within B158DRAFT_0122at 120.228 kb on - strand, within B158DRAFT_0122at 120.228 kb on - strand, within B158DRAFT_0122at 120.255 kb on + strand, within B158DRAFT_0122at 120.349 kb on - strand, within B158DRAFT_0122at 120.354 kb on - strand, within B158DRAFT_0122at 120.377 kb on + strand, within B158DRAFT_0122at 120.418 kb on + strand, within B158DRAFT_0122at 120.425 kb on + strand, within B158DRAFT_0122at 120.426 kb on - strand, within B158DRAFT_0122at 120.431 kb on - strand, within B158DRAFT_0122at 120.435 kb on - strand, within B158DRAFT_0122at 120.449 kb on + strand, within B158DRAFT_0122at 120.457 kb on - strand, within B158DRAFT_0122at 120.457 kb on - strand, within B158DRAFT_0122at 120.457 kb on - strand, within B158DRAFT_0122at 120.457 kb on - strand, within B158DRAFT_0122at 120.484 kb on - strand, within B158DRAFT_0122at 120.506 kb on + strand, within B158DRAFT_0122at 120.506 kb on + strand, within B158DRAFT_0122at 120.514 kb on - strand, within B158DRAFT_0122at 120.514 kb on - strand, within B158DRAFT_0122at 120.514 kb on - strand, within B158DRAFT_0122at 120.645 kb on - strand, within B158DRAFT_0122at 120.697 kb on - strand, within B158DRAFT_0122at 120.737 kb on + strand, within B158DRAFT_0122at 120.819 kb on + strand, within B158DRAFT_0122at 120.826 kb on + strand, within B158DRAFT_0122at 120.826 kb on - strand, within B158DRAFT_0122at 120.891 kb on + strand, within B158DRAFT_0122at 120.933 kb on + strand, within B158DRAFT_0122at 120.976 kb on - strand, within B158DRAFT_0122at 120.980 kb on - strand, within B158DRAFT_0122at 121.011 kb on + strand, within B158DRAFT_0122at 121.011 kb on + strand, within B158DRAFT_0122at 121.011 kb on + strand, within B158DRAFT_0122at 121.019 kb on - strand, within B158DRAFT_0122at 121.067 kb on + strand, within B158DRAFT_0122at 121.080 kb on + strand, within B158DRAFT_0122at 121.101 kb on - strand, within B158DRAFT_0122at 121.119 kb on + strand, within B158DRAFT_0122at 121.129 kb on + strand, within B158DRAFT_0122at 121.129 kb on + strand, within B158DRAFT_0122at 121.208 kb on - strandat 121.228 kb on + strandat 121.238 kb on + strandat 121.238 kb on + strandat 121.299 kb on + strandat 121.299 kb on + strandat 121.307 kb on - strandat 121.307 kb on - strandat 121.308 kb on - strandat 121.423 kb on - strand, within B158DRAFT_0123at 121.436 kb on + strand, within B158DRAFT_0123at 121.444 kb on - strand, within B158DRAFT_0123at 121.451 kb on - strand, within B158DRAFT_0123at 121.462 kb on - strand, within B158DRAFT_0123at 121.462 kb on - strand, within B158DRAFT_0123at 121.659 kb on + strand, within B158DRAFT_0123at 121.659 kb on + strand, within B158DRAFT_0123at 121.680 kb on + strand, within B158DRAFT_0123at 121.717 kb on + strand, within B158DRAFT_0123at 121.717 kb on + strand, within B158DRAFT_0123at 121.717 kb on + strand, within B158DRAFT_0123at 121.828 kb on + strandat 121.829 kb on - strandat 121.914 kb on + strandat 121.958 kb on - strand, within B158DRAFT_0124at 121.998 kb on + strand, within B158DRAFT_0124at 122.014 kb on + strand, within B158DRAFT_0124at 122.030 kb on - strand, within B158DRAFT_0124at 122.030 kb on - strand, within B158DRAFT_0124at 122.030 kb on - strand, within B158DRAFT_0124at 122.030 kb on - strand, within B158DRAFT_0124at 122.131 kb on - strand, within B158DRAFT_0124at 122.142 kb on - strand, within B158DRAFT_0124at 122.155 kb on - strand, within B158DRAFT_0124at 122.155 kb on - strand, within B158DRAFT_0124at 122.155 kb on - strand, within B158DRAFT_0124at 122.261 kb on + strand, within B158DRAFT_0124at 122.269 kb on - strand, within B158DRAFT_0124

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
remove
119,035 - B158DRAFT_0121 0.58 -1.3
119,035 - B158DRAFT_0121 0.58 -0.6
119,076 + B158DRAFT_0121 0.60 -3.7
119,084 - B158DRAFT_0121 0.60 -1.6
119,269 + B158DRAFT_0121 0.69 -3.0
119,269 + B158DRAFT_0121 0.69 -2.9
119,277 - B158DRAFT_0121 0.69 -0.4
119,279 - B158DRAFT_0121 0.69 -1.0
119,292 - B158DRAFT_0121 0.70 -1.9
119,308 - B158DRAFT_0121 0.70 -1.0
119,316 + B158DRAFT_0121 0.71 -3.3
119,316 + B158DRAFT_0121 0.71 -2.5
119,324 - B158DRAFT_0121 0.71 -1.0
119,328 + B158DRAFT_0121 0.71 -2.9
119,336 - B158DRAFT_0121 0.72 -0.2
119,352 - B158DRAFT_0121 0.72 -0.8
119,369 + B158DRAFT_0121 0.73 -3.3
119,370 - B158DRAFT_0121 0.73 -1.2
119,377 - B158DRAFT_0121 0.73 -2.2
119,475 + B158DRAFT_0121 0.78 -3.8
119,538 - B158DRAFT_0121 0.81 -0.9
119,567 + B158DRAFT_0121 0.82 -2.2
119,568 + B158DRAFT_0121 0.82 -3.2
119,576 - B158DRAFT_0121 0.82 -0.8
119,668 + B158DRAFT_0121 0.86 -2.5
119,687 - B158DRAFT_0121 0.87 -1.2
119,694 + B158DRAFT_0121 0.87 -3.7
119,723 + B158DRAFT_0121 0.89 -2.6
119,731 - B158DRAFT_0121 0.89 -1.4
119,731 - B158DRAFT_0121 0.89 -1.1
119,814 + -2.1
119,920 + -2.1
119,928 - -1.2
119,929 - -1.4
120,009 + -4.1
120,017 + -2.7
120,115 - +0.1
120,115 - +0.4
120,178 + B158DRAFT_0122 0.14 -3.3
120,180 + B158DRAFT_0122 0.15 -2.6
120,184 + B158DRAFT_0122 0.15 -3.5
120,226 + B158DRAFT_0122 0.18 -2.8
120,226 + B158DRAFT_0122 0.18 -2.0
120,226 + B158DRAFT_0122 0.18 -2.6
120,228 - B158DRAFT_0122 0.18 +0.6
120,228 - B158DRAFT_0122 0.18 +0.4
120,255 + B158DRAFT_0122 0.20 -2.2
120,349 - B158DRAFT_0122 0.28 +0.7
120,354 - B158DRAFT_0122 0.28 +1.0
120,377 + B158DRAFT_0122 0.30 -1.6
120,418 + B158DRAFT_0122 0.33 -3.2
120,425 + B158DRAFT_0122 0.33 -3.1
120,426 - B158DRAFT_0122 0.33 +0.2
120,431 - B158DRAFT_0122 0.34 +0.7
120,435 - B158DRAFT_0122 0.34 +0.1
120,449 + B158DRAFT_0122 0.35 -2.0
120,457 - B158DRAFT_0122 0.36 -0.3
120,457 - B158DRAFT_0122 0.36 +0.6
120,457 - B158DRAFT_0122 0.36 +0.2
120,457 - B158DRAFT_0122 0.36 +0.3
120,484 - B158DRAFT_0122 0.38 +0.5
120,506 + B158DRAFT_0122 0.40 -1.2
120,506 + B158DRAFT_0122 0.40 -2.1
120,514 - B158DRAFT_0122 0.40 +0.9
120,514 - B158DRAFT_0122 0.40 +0.2
120,514 - B158DRAFT_0122 0.40 +1.3
120,645 - B158DRAFT_0122 0.50 +0.4
120,697 - B158DRAFT_0122 0.54 +0.9
120,737 + B158DRAFT_0122 0.57 -2.1
120,819 + B158DRAFT_0122 0.64 -2.8
120,826 + B158DRAFT_0122 0.64 -1.5
120,826 - B158DRAFT_0122 0.64 +0.1
120,891 + B158DRAFT_0122 0.69 -2.0
120,933 + B158DRAFT_0122 0.73 -2.6
120,976 - B158DRAFT_0122 0.76 +0.4
120,980 - B158DRAFT_0122 0.76 +0.2
121,011 + B158DRAFT_0122 0.79 -1.4
121,011 + B158DRAFT_0122 0.79 -0.6
121,011 + B158DRAFT_0122 0.79 -0.6
121,019 - B158DRAFT_0122 0.79 +0.4
121,067 + B158DRAFT_0122 0.83 -4.1
121,080 + B158DRAFT_0122 0.84 -2.9
121,101 - B158DRAFT_0122 0.86 +0.1
121,119 + B158DRAFT_0122 0.87 -2.1
121,129 + B158DRAFT_0122 0.88 -2.9
121,129 + B158DRAFT_0122 0.88 -2.4
121,208 - +0.4
121,228 + -2.9
121,238 + -2.3
121,238 + -0.6
121,299 + -1.3
121,299 + -2.8
121,307 - -0.0
121,307 - -0.1
121,308 - +0.2
121,423 - B158DRAFT_0123 0.24 +0.9
121,436 + B158DRAFT_0123 0.27 -3.0
121,444 - B158DRAFT_0123 0.29 +0.5
121,451 - B158DRAFT_0123 0.30 +0.5
121,462 - B158DRAFT_0123 0.32 +0.2
121,462 - B158DRAFT_0123 0.32 +1.0
121,659 + B158DRAFT_0123 0.72 -1.7
121,659 + B158DRAFT_0123 0.72 -2.3
121,680 + B158DRAFT_0123 0.76 -1.6
121,717 + B158DRAFT_0123 0.84 -2.2
121,717 + B158DRAFT_0123 0.84 -1.6
121,717 + B158DRAFT_0123 0.84 -1.8
121,828 + -2.7
121,829 - -1.9
121,914 + -3.1
121,958 - B158DRAFT_0124 0.13 -2.0
121,998 + B158DRAFT_0124 0.16 -2.0
122,014 + B158DRAFT_0124 0.17 -2.3
122,030 - B158DRAFT_0124 0.18 -3.4
122,030 - B158DRAFT_0124 0.18 -2.4
122,030 - B158DRAFT_0124 0.18 -5.8
122,030 - B158DRAFT_0124 0.18 -3.3
122,131 - B158DRAFT_0124 0.26 -2.0
122,142 - B158DRAFT_0124 0.27 -1.7
122,155 - B158DRAFT_0124 0.28 -3.0
122,155 - B158DRAFT_0124 0.28 -3.8
122,155 - B158DRAFT_0124 0.28 -2.9
122,261 + B158DRAFT_0124 0.37 -1.4
122,269 - B158DRAFT_0124 0.37 -3.0

Or see this region's nucleotide sequence