Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0116

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0115 and B158DRAFT_0116 are separated by 67 nucleotidesB158DRAFT_0116 and B158DRAFT_0117 overlap by 1 nucleotidesB158DRAFT_0117 and B158DRAFT_0118 overlap by 4 nucleotides B158DRAFT_0115: B158DRAFT_0115 - NADH dehydrogenase subunit M (EC 1.6.5.3), at 111,578 to 113,095 _0115 B158DRAFT_0116: B158DRAFT_0116 - NADH dehydrogenase subunit L (EC 1.6.5.3), at 113,163 to 115,181 _0116 B158DRAFT_0117: B158DRAFT_0117 - NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K), at 115,181 to 115,483 _0117 B158DRAFT_0118: B158DRAFT_0118 - NADH dehydrogenase subunit J (EC 1.6.5.3), at 115,480 to 116,160 _0118 Position (kb) 113 114 115 116Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 112.178 kb on - strand, within B158DRAFT_0115at 112.212 kb on + strand, within B158DRAFT_0115at 112.250 kb on + strand, within B158DRAFT_0115at 112.250 kb on + strand, within B158DRAFT_0115at 112.263 kb on - strand, within B158DRAFT_0115at 112.263 kb on - strand, within B158DRAFT_0115at 112.263 kb on - strand, within B158DRAFT_0115at 112.354 kb on + strand, within B158DRAFT_0115at 112.403 kb on + strand, within B158DRAFT_0115at 112.403 kb on + strand, within B158DRAFT_0115at 112.403 kb on + strand, within B158DRAFT_0115at 112.411 kb on - strand, within B158DRAFT_0115at 112.487 kb on + strand, within B158DRAFT_0115at 112.536 kb on + strand, within B158DRAFT_0115at 112.536 kb on + strand, within B158DRAFT_0115at 112.536 kb on + strand, within B158DRAFT_0115at 112.536 kb on + strand, within B158DRAFT_0115at 112.544 kb on - strand, within B158DRAFT_0115at 112.623 kb on + strand, within B158DRAFT_0115at 112.718 kb on - strand, within B158DRAFT_0115at 112.787 kb on + strand, within B158DRAFT_0115at 112.795 kb on - strand, within B158DRAFT_0115at 112.795 kb on - strand, within B158DRAFT_0115at 112.795 kb on - strand, within B158DRAFT_0115at 112.795 kb on - strand, within B158DRAFT_0115at 112.814 kb on + strand, within B158DRAFT_0115at 112.814 kb on + strand, within B158DRAFT_0115at 112.979 kb on - strandat 113.097 kb on + strandat 113.097 kb on + strandat 113.097 kb on + strandat 113.097 kb on + strandat 113.099 kb on + strandat 113.105 kb on - strandat 113.105 kb on - strandat 113.105 kb on - strandat 113.107 kb on - strandat 113.113 kb on - strandat 113.174 kb on + strandat 113.184 kb on + strandat 113.192 kb on - strandat 113.192 kb on - strandat 113.209 kb on + strandat 113.217 kb on - strandat 113.219 kb on + strandat 113.219 kb on + strandat 113.227 kb on - strandat 113.228 kb on - strandat 113.229 kb on - strandat 113.366 kb on - strand, within B158DRAFT_0116at 113.367 kb on - strand, within B158DRAFT_0116at 113.520 kb on + strand, within B158DRAFT_0116at 113.520 kb on + strand, within B158DRAFT_0116at 113.528 kb on - strand, within B158DRAFT_0116at 113.622 kb on - strand, within B158DRAFT_0116at 113.679 kb on + strand, within B158DRAFT_0116at 113.709 kb on + strand, within B158DRAFT_0116at 113.784 kb on - strand, within B158DRAFT_0116at 113.802 kb on + strand, within B158DRAFT_0116at 113.808 kb on - strand, within B158DRAFT_0116at 113.810 kb on - strand, within B158DRAFT_0116at 113.824 kb on - strand, within B158DRAFT_0116at 113.842 kb on - strand, within B158DRAFT_0116at 113.902 kb on + strand, within B158DRAFT_0116at 113.905 kb on - strand, within B158DRAFT_0116at 113.905 kb on - strand, within B158DRAFT_0116at 113.912 kb on - strand, within B158DRAFT_0116at 113.912 kb on - strand, within B158DRAFT_0116at 113.974 kb on + strand, within B158DRAFT_0116at 113.975 kb on - strand, within B158DRAFT_0116at 113.980 kb on + strand, within B158DRAFT_0116at 113.982 kb on + strand, within B158DRAFT_0116at 113.982 kb on - strand, within B158DRAFT_0116at 113.990 kb on - strand, within B158DRAFT_0116at 114.032 kb on + strand, within B158DRAFT_0116at 114.057 kb on + strand, within B158DRAFT_0116at 114.065 kb on - strand, within B158DRAFT_0116at 114.114 kb on - strand, within B158DRAFT_0116at 114.186 kb on + strand, within B158DRAFT_0116at 114.249 kb on + strand, within B158DRAFT_0116at 114.280 kb on + strand, within B158DRAFT_0116at 114.333 kb on + strand, within B158DRAFT_0116at 114.336 kb on - strand, within B158DRAFT_0116at 114.403 kb on + strand, within B158DRAFT_0116at 114.411 kb on - strand, within B158DRAFT_0116at 114.452 kb on - strand, within B158DRAFT_0116at 114.467 kb on - strand, within B158DRAFT_0116at 114.476 kb on - strand, within B158DRAFT_0116at 114.496 kb on - strand, within B158DRAFT_0116at 114.498 kb on + strand, within B158DRAFT_0116at 114.501 kb on - strand, within B158DRAFT_0116at 114.525 kb on + strand, within B158DRAFT_0116at 114.557 kb on + strand, within B158DRAFT_0116at 114.726 kb on + strand, within B158DRAFT_0116at 114.726 kb on + strand, within B158DRAFT_0116at 114.734 kb on - strand, within B158DRAFT_0116at 114.759 kb on - strand, within B158DRAFT_0116at 114.786 kb on + strand, within B158DRAFT_0116at 114.813 kb on + strand, within B158DRAFT_0116at 114.859 kb on - strand, within B158DRAFT_0116at 114.870 kb on + strand, within B158DRAFT_0116at 114.878 kb on + strand, within B158DRAFT_0116at 114.878 kb on + strand, within B158DRAFT_0116at 114.886 kb on - strand, within B158DRAFT_0116at 114.886 kb on - strand, within B158DRAFT_0116at 114.910 kb on - strand, within B158DRAFT_0116at 115.021 kb on + strandat 115.021 kb on + strandat 115.021 kb on + strandat 115.021 kb on + strandat 115.029 kb on - strandat 115.031 kb on + strandat 115.043 kb on + strandat 115.063 kb on - strandat 115.069 kb on + strandat 115.109 kb on - strandat 115.187 kb on - strandat 115.202 kb on - strandat 115.212 kb on - strand, within B158DRAFT_0117at 115.212 kb on - strand, within B158DRAFT_0117at 115.212 kb on - strand, within B158DRAFT_0117at 115.232 kb on + strand, within B158DRAFT_0117at 115.258 kb on - strand, within B158DRAFT_0117at 115.258 kb on - strand, within B158DRAFT_0117at 115.270 kb on + strand, within B158DRAFT_0117at 115.375 kb on + strand, within B158DRAFT_0117at 115.383 kb on - strand, within B158DRAFT_0117at 115.386 kb on - strand, within B158DRAFT_0117at 115.432 kb on + strand, within B158DRAFT_0117at 115.489 kb on - strandat 115.501 kb on - strandat 115.541 kb on + strandat 115.560 kb on + strand, within B158DRAFT_0118at 115.610 kb on + strand, within B158DRAFT_0118at 115.615 kb on + strand, within B158DRAFT_0118at 115.615 kb on + strand, within B158DRAFT_0118at 115.623 kb on - strand, within B158DRAFT_0118at 115.630 kb on + strand, within B158DRAFT_0118at 115.736 kb on + strand, within B158DRAFT_0118at 115.736 kb on + strand, within B158DRAFT_0118at 115.736 kb on + strand, within B158DRAFT_0118at 115.749 kb on + strand, within B158DRAFT_0118at 115.757 kb on + strand, within B158DRAFT_0118at 115.758 kb on - strand, within B158DRAFT_0118at 115.768 kb on + strand, within B158DRAFT_0118at 115.824 kb on - strand, within B158DRAFT_0118at 115.889 kb on - strand, within B158DRAFT_0118at 115.905 kb on + strand, within B158DRAFT_0118at 115.905 kb on + strand, within B158DRAFT_0118at 115.905 kb on + strand, within B158DRAFT_0118at 115.913 kb on - strand, within B158DRAFT_0118at 115.913 kb on - strand, within B158DRAFT_0118at 115.913 kb on - strand, within B158DRAFT_0118at 115.913 kb on - strand, within B158DRAFT_0118at 115.915 kb on + strand, within B158DRAFT_0118at 115.954 kb on - strand, within B158DRAFT_0118at 115.973 kb on + strand, within B158DRAFT_0118at 115.978 kb on + strand, within B158DRAFT_0118at 115.981 kb on - strand, within B158DRAFT_0118at 115.981 kb on - strand, within B158DRAFT_0118at 115.981 kb on - strand, within B158DRAFT_0118at 116.031 kb on - strand, within B158DRAFT_0118at 116.059 kb on + strand, within B158DRAFT_0118at 116.067 kb on - strand, within B158DRAFT_0118at 116.090 kb on + strand, within B158DRAFT_0118at 116.098 kb on + strandat 116.119 kb on - strandat 116.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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112,178 - B158DRAFT_0115 0.40 -2.1
112,212 + B158DRAFT_0115 0.42 -2.7
112,250 + B158DRAFT_0115 0.44 -2.8
112,250 + B158DRAFT_0115 0.44 -3.0
112,263 - B158DRAFT_0115 0.45 -0.9
112,263 - B158DRAFT_0115 0.45 -0.7
112,263 - B158DRAFT_0115 0.45 -1.3
112,354 + B158DRAFT_0115 0.51 -1.2
112,403 + B158DRAFT_0115 0.54 -3.4
112,403 + B158DRAFT_0115 0.54 -2.1
112,403 + B158DRAFT_0115 0.54 -2.7
112,411 - B158DRAFT_0115 0.55 -0.7
112,487 + B158DRAFT_0115 0.60 -1.6
112,536 + B158DRAFT_0115 0.63 -0.8
112,536 + B158DRAFT_0115 0.63 -2.9
112,536 + B158DRAFT_0115 0.63 -2.2
112,536 + B158DRAFT_0115 0.63 -2.3
112,544 - B158DRAFT_0115 0.64 -0.7
112,623 + B158DRAFT_0115 0.69 -3.0
112,718 - B158DRAFT_0115 0.75 -1.0
112,787 + B158DRAFT_0115 0.80 -2.8
112,795 - B158DRAFT_0115 0.80 -0.8
112,795 - B158DRAFT_0115 0.80 -1.3
112,795 - B158DRAFT_0115 0.80 -0.6
112,795 - B158DRAFT_0115 0.80 -0.4
112,814 + B158DRAFT_0115 0.81 -2.5
112,814 + B158DRAFT_0115 0.81 -2.5
112,979 - -1.5
113,097 + -2.4
113,097 + -2.3
113,097 + -2.2
113,097 + -2.4
113,099 + -1.8
113,105 - -0.2
113,105 - -0.8
113,105 - -0.2
113,107 - +0.7
113,113 - +0.5
113,174 + -2.2
113,184 + -2.6
113,192 - +0.3
113,192 - -0.1
113,209 + -1.6
113,217 - -0.1
113,219 + -1.5
113,219 + -2.2
113,227 - +0.3
113,228 - +0.2
113,229 - -0.7
113,366 - B158DRAFT_0116 0.10 -0.4
113,367 - B158DRAFT_0116 0.10 -0.4
113,520 + B158DRAFT_0116 0.18 -2.2
113,520 + B158DRAFT_0116 0.18 -1.5
113,528 - B158DRAFT_0116 0.18 +0.2
113,622 - B158DRAFT_0116 0.23 -0.3
113,679 + B158DRAFT_0116 0.26 -0.6
113,709 + B158DRAFT_0116 0.27 -2.5
113,784 - B158DRAFT_0116 0.31 -0.4
113,802 + B158DRAFT_0116 0.32 -2.0
113,808 - B158DRAFT_0116 0.32 -0.4
113,810 - B158DRAFT_0116 0.32 -1.0
113,824 - B158DRAFT_0116 0.33 -0.4
113,842 - B158DRAFT_0116 0.34 -0.1
113,902 + B158DRAFT_0116 0.37 -2.6
113,905 - B158DRAFT_0116 0.37 -0.4
113,905 - B158DRAFT_0116 0.37 -0.4
113,912 - B158DRAFT_0116 0.37 -0.7
113,912 - B158DRAFT_0116 0.37 -0.9
113,974 + B158DRAFT_0116 0.40 -1.7
113,975 - B158DRAFT_0116 0.40 -0.8
113,980 + B158DRAFT_0116 0.40 -2.0
113,982 + B158DRAFT_0116 0.41 -2.1
113,982 - B158DRAFT_0116 0.41 -0.2
113,990 - B158DRAFT_0116 0.41 -0.5
114,032 + B158DRAFT_0116 0.43 -2.4
114,057 + B158DRAFT_0116 0.44 -2.0
114,065 - B158DRAFT_0116 0.45 -0.3
114,114 - B158DRAFT_0116 0.47 -0.3
114,186 + B158DRAFT_0116 0.51 -2.3
114,249 + B158DRAFT_0116 0.54 -1.0
114,280 + B158DRAFT_0116 0.55 -2.2
114,333 + B158DRAFT_0116 0.58 -2.4
114,336 - B158DRAFT_0116 0.58 -0.9
114,403 + B158DRAFT_0116 0.61 -4.2
114,411 - B158DRAFT_0116 0.62 -0.2
114,452 - B158DRAFT_0116 0.64 -1.7
114,467 - B158DRAFT_0116 0.65 -2.2
114,476 - B158DRAFT_0116 0.65 -1.3
114,496 - B158DRAFT_0116 0.66 -0.7
114,498 + B158DRAFT_0116 0.66 -2.9
114,501 - B158DRAFT_0116 0.66 -0.9
114,525 + B158DRAFT_0116 0.67 -1.6
114,557 + B158DRAFT_0116 0.69 -2.5
114,726 + B158DRAFT_0116 0.77 -4.1
114,726 + B158DRAFT_0116 0.77 -3.6
114,734 - B158DRAFT_0116 0.78 -0.8
114,759 - B158DRAFT_0116 0.79 -0.5
114,786 + B158DRAFT_0116 0.80 -1.9
114,813 + B158DRAFT_0116 0.82 -2.5
114,859 - B158DRAFT_0116 0.84 +1.6
114,870 + B158DRAFT_0116 0.85 -1.4
114,878 + B158DRAFT_0116 0.85 -2.0
114,878 + B158DRAFT_0116 0.85 -2.7
114,886 - B158DRAFT_0116 0.85 -0.3
114,886 - B158DRAFT_0116 0.85 -0.7
114,910 - B158DRAFT_0116 0.87 -0.8
115,021 + -1.1
115,021 + -2.6
115,021 + -1.3
115,021 + -1.6
115,029 - -0.5
115,031 + -3.1
115,043 + -2.4
115,063 - -1.6
115,069 + -1.7
115,109 - -1.1
115,187 - -0.1
115,202 - +0.5
115,212 - B158DRAFT_0117 0.10 +0.1
115,212 - B158DRAFT_0117 0.10 -0.2
115,212 - B158DRAFT_0117 0.10 +0.4
115,232 + B158DRAFT_0117 0.17 -1.7
115,258 - B158DRAFT_0117 0.25 -0.3
115,258 - B158DRAFT_0117 0.25 +0.1
115,270 + B158DRAFT_0117 0.29 -2.4
115,375 + B158DRAFT_0117 0.64 -3.2
115,383 - B158DRAFT_0117 0.67 -2.1
115,386 - B158DRAFT_0117 0.68 -2.6
115,432 + B158DRAFT_0117 0.83 -4.3
115,489 - +0.4
115,501 - +0.1
115,541 + -3.2
115,560 + B158DRAFT_0118 0.12 -4.2
115,610 + B158DRAFT_0118 0.19 -2.2
115,615 + B158DRAFT_0118 0.20 -3.4
115,615 + B158DRAFT_0118 0.20 -3.1
115,623 - B158DRAFT_0118 0.21 +0.4
115,630 + B158DRAFT_0118 0.22 -2.8
115,736 + B158DRAFT_0118 0.38 -2.8
115,736 + B158DRAFT_0118 0.38 -2.1
115,736 + B158DRAFT_0118 0.38 -3.2
115,749 + B158DRAFT_0118 0.40 -3.0
115,757 + B158DRAFT_0118 0.41 -2.0
115,758 - B158DRAFT_0118 0.41 -2.1
115,768 + B158DRAFT_0118 0.42 -3.2
115,824 - B158DRAFT_0118 0.51 -0.7
115,889 - B158DRAFT_0118 0.60 -1.6
115,905 + B158DRAFT_0118 0.62 -3.1
115,905 + B158DRAFT_0118 0.62 -2.6
115,905 + B158DRAFT_0118 0.62 -2.6
115,913 - B158DRAFT_0118 0.64 -0.7
115,913 - B158DRAFT_0118 0.64 -5.2
115,913 - B158DRAFT_0118 0.64 -1.3
115,913 - B158DRAFT_0118 0.64 -2.2
115,915 + B158DRAFT_0118 0.64 -2.8
115,954 - B158DRAFT_0118 0.70 +0.2
115,973 + B158DRAFT_0118 0.72 -3.0
115,978 + B158DRAFT_0118 0.73 -3.2
115,981 - B158DRAFT_0118 0.74 -3.1
115,981 - B158DRAFT_0118 0.74 -2.9
115,981 - B158DRAFT_0118 0.74 -3.1
116,031 - B158DRAFT_0118 0.81 -3.2
116,059 + B158DRAFT_0118 0.85 -4.9
116,067 - B158DRAFT_0118 0.86 -2.2
116,090 + B158DRAFT_0118 0.90 -2.9
116,098 + -3.1
116,119 - -2.2
116,155 + -2.6

Or see this region's nucleotide sequence