Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1561

Experiment: m.b. A22 0.0109375 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1559 and B158DRAFT_1560 are separated by 69 nucleotidesB158DRAFT_1560 and B158DRAFT_1561 overlap by 4 nucleotidesB158DRAFT_1561 and B158DRAFT_1562 are separated by 50 nucleotidesB158DRAFT_1562 and B158DRAFT_1563 are separated by 105 nucleotides B158DRAFT_1559: B158DRAFT_1559 - hypothetical protein, at 1,614,606 to 1,614,896 _1559 B158DRAFT_1560: B158DRAFT_1560 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,614,966 to 1,615,640 _1560 B158DRAFT_1561: B158DRAFT_1561 - Signal transduction histidine kinase, at 1,615,637 to 1,616,998 _1561 B158DRAFT_1562: B158DRAFT_1562 - hypothetical protein, at 1,617,049 to 1,617,771 _1562 B158DRAFT_1563: B158DRAFT_1563 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,617,877 to 1,618,986 _1563 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -3 -2 -1 0 1at 1614.665 kb on + strand, within B158DRAFT_1559at 1614.668 kb on - strand, within B158DRAFT_1559at 1614.709 kb on + strand, within B158DRAFT_1559at 1614.711 kb on - strand, within B158DRAFT_1559at 1614.713 kb on - strand, within B158DRAFT_1559at 1614.713 kb on - strand, within B158DRAFT_1559at 1614.713 kb on - strand, within B158DRAFT_1559at 1614.713 kb on - strand, within B158DRAFT_1559at 1614.713 kb on - strand, within B158DRAFT_1559at 1614.764 kb on - strand, within B158DRAFT_1559at 1614.807 kb on + strand, within B158DRAFT_1559at 1614.815 kb on - strand, within B158DRAFT_1559at 1614.861 kb on - strand, within B158DRAFT_1559at 1614.861 kb on - strand, within B158DRAFT_1559at 1614.861 kb on - strand, within B158DRAFT_1559at 1614.861 kb on - strand, within B158DRAFT_1559at 1614.861 kb on - strand, within B158DRAFT_1559at 1614.861 kb on - strand, within B158DRAFT_1559at 1614.863 kb on + strand, within B158DRAFT_1559at 1614.863 kb on + strand, within B158DRAFT_1559at 1614.863 kb on + strand, within B158DRAFT_1559at 1614.871 kb on - strandat 1614.871 kb on - strandat 1614.871 kb on - strandat 1614.946 kb on + strandat 1614.952 kb on + strandat 1614.954 kb on - strandat 1614.954 kb on - strandat 1614.954 kb on - strandat 1614.962 kb on - strandat 1615.013 kb on + strandat 1615.042 kb on - strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.071 kb on + strand, within B158DRAFT_1560at 1615.079 kb on - strand, within B158DRAFT_1560at 1615.079 kb on - strand, within B158DRAFT_1560at 1615.079 kb on - strand, within B158DRAFT_1560at 1615.079 kb on - strand, within B158DRAFT_1560at 1615.079 kb on - strand, within B158DRAFT_1560at 1615.079 kb on - strand, within B158DRAFT_1560at 1615.080 kb on - strand, within B158DRAFT_1560at 1615.173 kb on + strand, within B158DRAFT_1560at 1615.248 kb on + strand, within B158DRAFT_1560at 1615.248 kb on + strand, within B158DRAFT_1560at 1615.262 kb on + strand, within B158DRAFT_1560at 1615.262 kb on + strand, within B158DRAFT_1560at 1615.270 kb on - strand, within B158DRAFT_1560at 1615.270 kb on - strand, within B158DRAFT_1560at 1615.270 kb on - strand, within B158DRAFT_1560at 1615.270 kb on - strand, within B158DRAFT_1560at 1615.270 kb on - strand, within B158DRAFT_1560at 1615.270 kb on - strand, within B158DRAFT_1560at 1615.279 kb on - strand, within B158DRAFT_1560at 1615.298 kb on + strand, within B158DRAFT_1560at 1615.306 kb on - strand, within B158DRAFT_1560at 1615.306 kb on - strand, within B158DRAFT_1560at 1615.321 kb on - strand, within B158DRAFT_1560at 1615.337 kb on + strand, within B158DRAFT_1560at 1615.361 kb on - strand, within B158DRAFT_1560at 1615.380 kb on - strand, within B158DRAFT_1560at 1615.427 kb on + strand, within B158DRAFT_1560at 1615.434 kb on + strand, within B158DRAFT_1560at 1615.434 kb on + strand, within B158DRAFT_1560at 1615.442 kb on - strand, within B158DRAFT_1560at 1615.459 kb on - strand, within B158DRAFT_1560at 1615.459 kb on - strand, within B158DRAFT_1560at 1615.461 kb on + strand, within B158DRAFT_1560at 1615.472 kb on + strand, within B158DRAFT_1560at 1615.496 kb on + strand, within B158DRAFT_1560at 1615.496 kb on + strand, within B158DRAFT_1560at 1615.496 kb on + strand, within B158DRAFT_1560at 1615.496 kb on + strand, within B158DRAFT_1560at 1615.496 kb on + strand, within B158DRAFT_1560at 1615.496 kb on + strand, within B158DRAFT_1560at 1615.496 kb on + strand, within B158DRAFT_1560at 1615.496 kb on + strand, within B158DRAFT_1560at 1615.496 kb on + strand, within B158DRAFT_1560at 1615.504 kb on - strand, within B158DRAFT_1560at 1615.504 kb on - strand, within B158DRAFT_1560at 1615.504 kb on - strand, within B158DRAFT_1560at 1615.504 kb on - strand, within B158DRAFT_1560at 1615.522 kb on + strand, within B158DRAFT_1560at 1615.530 kb on - strand, within B158DRAFT_1560at 1615.582 kb on + strandat 1615.590 kb on - strandat 1615.590 kb on - strandat 1615.627 kb on + strandat 1615.649 kb on - strandat 1615.651 kb on + strandat 1615.659 kb on - strandat 1615.659 kb on - strandat 1615.689 kb on + strandat 1615.740 kb on + strandat 1615.775 kb on - strand, within B158DRAFT_1561at 1615.775 kb on - strand, within B158DRAFT_1561at 1615.789 kb on + strand, within B158DRAFT_1561at 1615.789 kb on + strand, within B158DRAFT_1561at 1615.809 kb on + strand, within B158DRAFT_1561at 1615.817 kb on - strand, within B158DRAFT_1561at 1615.818 kb on + strand, within B158DRAFT_1561at 1615.827 kb on - strand, within B158DRAFT_1561at 1615.832 kb on + strand, within B158DRAFT_1561at 1615.833 kb on + strand, within B158DRAFT_1561at 1615.841 kb on - strand, within B158DRAFT_1561at 1615.850 kb on - strand, within B158DRAFT_1561at 1615.885 kb on - strand, within B158DRAFT_1561at 1615.906 kb on - strand, within B158DRAFT_1561at 1615.923 kb on + strand, within B158DRAFT_1561at 1615.923 kb on + strand, within B158DRAFT_1561at 1615.950 kb on - strand, within B158DRAFT_1561at 1615.956 kb on + strand, within B158DRAFT_1561at 1615.964 kb on - strand, within B158DRAFT_1561at 1615.964 kb on - strand, within B158DRAFT_1561at 1615.964 kb on - strand, within B158DRAFT_1561at 1615.964 kb on - strand, within B158DRAFT_1561at 1615.990 kb on - strand, within B158DRAFT_1561at 1615.990 kb on - strand, within B158DRAFT_1561at 1616.079 kb on + strand, within B158DRAFT_1561at 1616.162 kb on + strand, within B158DRAFT_1561at 1616.170 kb on - strand, within B158DRAFT_1561at 1616.188 kb on - strand, within B158DRAFT_1561at 1616.216 kb on + strand, within B158DRAFT_1561at 1616.224 kb on - strand, within B158DRAFT_1561at 1616.260 kb on + strand, within B158DRAFT_1561at 1616.268 kb on - strand, within B158DRAFT_1561at 1616.268 kb on - strand, within B158DRAFT_1561at 1616.268 kb on - strand, within B158DRAFT_1561at 1616.268 kb on - strand, within B158DRAFT_1561at 1616.276 kb on - strand, within B158DRAFT_1561at 1616.287 kb on - strand, within B158DRAFT_1561at 1616.365 kb on + strand, within B158DRAFT_1561at 1616.373 kb on - strand, within B158DRAFT_1561at 1616.497 kb on + strand, within B158DRAFT_1561at 1616.555 kb on - strand, within B158DRAFT_1561at 1616.602 kb on + strand, within B158DRAFT_1561at 1616.602 kb on + strand, within B158DRAFT_1561at 1616.602 kb on + strand, within B158DRAFT_1561at 1616.602 kb on + strand, within B158DRAFT_1561at 1616.602 kb on + strand, within B158DRAFT_1561at 1616.602 kb on + strand, within B158DRAFT_1561at 1616.602 kb on + strand, within B158DRAFT_1561at 1616.602 kb on + strand, within B158DRAFT_1561at 1616.602 kb on + strand, within B158DRAFT_1561at 1616.610 kb on - strand, within B158DRAFT_1561at 1616.610 kb on - strand, within B158DRAFT_1561at 1616.610 kb on - strand, within B158DRAFT_1561at 1616.610 kb on - strand, within B158DRAFT_1561at 1616.620 kb on + strand, within B158DRAFT_1561at 1616.689 kb on + strand, within B158DRAFT_1561at 1616.696 kb on - strand, within B158DRAFT_1561at 1616.722 kb on - strand, within B158DRAFT_1561at 1616.776 kb on - strand, within B158DRAFT_1561at 1616.823 kb on - strand, within B158DRAFT_1561at 1616.889 kb on + strandat 1616.890 kb on - strandat 1616.959 kb on + strandat 1616.959 kb on + strandat 1616.969 kb on + strandat 1616.969 kb on + strandat 1616.977 kb on - strandat 1617.006 kb on + strandat 1617.006 kb on + strandat 1617.006 kb on + strandat 1617.014 kb on - strandat 1617.014 kb on - strandat 1617.014 kb on - strandat 1617.018 kb on + strandat 1617.026 kb on - strandat 1617.178 kb on + strand, within B158DRAFT_1562at 1617.179 kb on + strand, within B158DRAFT_1562at 1617.194 kb on - strand, within B158DRAFT_1562at 1617.274 kb on - strand, within B158DRAFT_1562at 1617.323 kb on + strand, within B158DRAFT_1562at 1617.373 kb on - strand, within B158DRAFT_1562at 1617.422 kb on + strand, within B158DRAFT_1562at 1617.440 kb on + strand, within B158DRAFT_1562at 1617.556 kb on - strand, within B158DRAFT_1562at 1617.613 kb on - strand, within B158DRAFT_1562at 1617.633 kb on + strand, within B158DRAFT_1562at 1617.633 kb on + strand, within B158DRAFT_1562at 1617.641 kb on - strand, within B158DRAFT_1562at 1617.641 kb on - strand, within B158DRAFT_1562at 1617.651 kb on - strand, within B158DRAFT_1562at 1617.664 kb on + strand, within B158DRAFT_1562at 1617.677 kb on + strand, within B158DRAFT_1562at 1617.873 kb on + strandat 1617.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.0109375 mg/ml
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1,614,665 + B158DRAFT_1559 0.20 -0.3
1,614,668 - B158DRAFT_1559 0.21 -1.0
1,614,709 + B158DRAFT_1559 0.35 -1.4
1,614,711 - B158DRAFT_1559 0.36 +0.2
1,614,713 - B158DRAFT_1559 0.37 +0.1
1,614,713 - B158DRAFT_1559 0.37 -1.9
1,614,713 - B158DRAFT_1559 0.37 +0.1
1,614,713 - B158DRAFT_1559 0.37 +0.1
1,614,713 - B158DRAFT_1559 0.37 +0.1
1,614,764 - B158DRAFT_1559 0.54 -0.3
1,614,807 + B158DRAFT_1559 0.69 -3.7
1,614,815 - B158DRAFT_1559 0.72 -0.2
1,614,861 - B158DRAFT_1559 0.88 +0.0
1,614,861 - B158DRAFT_1559 0.88 +0.0
1,614,861 - B158DRAFT_1559 0.88 -0.5
1,614,861 - B158DRAFT_1559 0.88 -1.4
1,614,861 - B158DRAFT_1559 0.88 -0.4
1,614,861 - B158DRAFT_1559 0.88 -0.3
1,614,863 + B158DRAFT_1559 0.88 -0.1
1,614,863 + B158DRAFT_1559 0.88 +0.1
1,614,863 + B158DRAFT_1559 0.88 -0.3
1,614,871 - +0.5
1,614,871 - -0.5
1,614,871 - -0.4
1,614,946 + +0.7
1,614,952 + +1.6
1,614,954 - +0.0
1,614,954 - -0.2
1,614,954 - +0.0
1,614,962 - -0.0
1,615,013 + -0.9
1,615,042 - B158DRAFT_1560 0.11 -1.0
1,615,071 + B158DRAFT_1560 0.16 -0.1
1,615,071 + B158DRAFT_1560 0.16 +0.3
1,615,071 + B158DRAFT_1560 0.16 +0.4
1,615,071 + B158DRAFT_1560 0.16 -1.4
1,615,071 + B158DRAFT_1560 0.16 -0.5
1,615,071 + B158DRAFT_1560 0.16 -1.0
1,615,071 + B158DRAFT_1560 0.16 +0.5
1,615,071 + B158DRAFT_1560 0.16 -0.4
1,615,071 + B158DRAFT_1560 0.16 -0.6
1,615,071 + B158DRAFT_1560 0.16 -0.3
1,615,071 + B158DRAFT_1560 0.16 +0.6
1,615,071 + B158DRAFT_1560 0.16 +0.2
1,615,079 - B158DRAFT_1560 0.17 -1.4
1,615,079 - B158DRAFT_1560 0.17 -0.0
1,615,079 - B158DRAFT_1560 0.17 -1.0
1,615,079 - B158DRAFT_1560 0.17 +0.1
1,615,079 - B158DRAFT_1560 0.17 -0.5
1,615,079 - B158DRAFT_1560 0.17 +1.1
1,615,080 - B158DRAFT_1560 0.17 -0.1
1,615,173 + B158DRAFT_1560 0.31 +0.0
1,615,248 + B158DRAFT_1560 0.42 +0.4
1,615,248 + B158DRAFT_1560 0.42 +0.3
1,615,262 + B158DRAFT_1560 0.44 -0.1
1,615,262 + B158DRAFT_1560 0.44 +0.3
1,615,270 - B158DRAFT_1560 0.45 +0.3
1,615,270 - B158DRAFT_1560 0.45 -0.0
1,615,270 - B158DRAFT_1560 0.45 -0.5
1,615,270 - B158DRAFT_1560 0.45 +0.7
1,615,270 - B158DRAFT_1560 0.45 -1.3
1,615,270 - B158DRAFT_1560 0.45 -0.3
1,615,279 - B158DRAFT_1560 0.46 +0.2
1,615,298 + B158DRAFT_1560 0.49 -0.4
1,615,306 - B158DRAFT_1560 0.50 +1.1
1,615,306 - B158DRAFT_1560 0.50 +0.7
1,615,321 - B158DRAFT_1560 0.53 +0.7
1,615,337 + B158DRAFT_1560 0.55 -0.4
1,615,361 - B158DRAFT_1560 0.59 +0.0
1,615,380 - B158DRAFT_1560 0.61 +1.4
1,615,427 + B158DRAFT_1560 0.68 -0.3
1,615,434 + B158DRAFT_1560 0.69 -1.1
1,615,434 + B158DRAFT_1560 0.69 +0.5
1,615,442 - B158DRAFT_1560 0.71 -0.3
1,615,459 - B158DRAFT_1560 0.73 +0.2
1,615,459 - B158DRAFT_1560 0.73 -0.3
1,615,461 + B158DRAFT_1560 0.73 -0.4
1,615,472 + B158DRAFT_1560 0.75 -1.0
1,615,496 + B158DRAFT_1560 0.79 -0.3
1,615,496 + B158DRAFT_1560 0.79 +0.1
1,615,496 + B158DRAFT_1560 0.79 -0.2
1,615,496 + B158DRAFT_1560 0.79 -0.3
1,615,496 + B158DRAFT_1560 0.79 -0.1
1,615,496 + B158DRAFT_1560 0.79 +0.5
1,615,496 + B158DRAFT_1560 0.79 +0.6
1,615,496 + B158DRAFT_1560 0.79 -0.2
1,615,496 + B158DRAFT_1560 0.79 -1.2
1,615,504 - B158DRAFT_1560 0.80 -0.4
1,615,504 - B158DRAFT_1560 0.80 +0.2
1,615,504 - B158DRAFT_1560 0.80 -0.8
1,615,504 - B158DRAFT_1560 0.80 -0.4
1,615,522 + B158DRAFT_1560 0.82 -0.3
1,615,530 - B158DRAFT_1560 0.84 +0.6
1,615,582 + +0.3
1,615,590 - -0.4
1,615,590 - -0.4
1,615,627 + -0.2
1,615,649 - +0.1
1,615,651 + -0.0
1,615,659 - -0.5
1,615,659 - +0.2
1,615,689 + -0.9
1,615,740 + +0.2
1,615,775 - B158DRAFT_1561 0.10 -0.3
1,615,775 - B158DRAFT_1561 0.10 +0.3
1,615,789 + B158DRAFT_1561 0.11 +0.2
1,615,789 + B158DRAFT_1561 0.11 -0.2
1,615,809 + B158DRAFT_1561 0.13 -0.6
1,615,817 - B158DRAFT_1561 0.13 -0.4
1,615,818 + B158DRAFT_1561 0.13 -1.4
1,615,827 - B158DRAFT_1561 0.14 -0.4
1,615,832 + B158DRAFT_1561 0.14 -0.6
1,615,833 + B158DRAFT_1561 0.14 -2.2
1,615,841 - B158DRAFT_1561 0.15 +0.3
1,615,850 - B158DRAFT_1561 0.16 -0.7
1,615,885 - B158DRAFT_1561 0.18 -0.6
1,615,906 - B158DRAFT_1561 0.20 -0.2
1,615,923 + B158DRAFT_1561 0.21 -0.1
1,615,923 + B158DRAFT_1561 0.21 -0.5
1,615,950 - B158DRAFT_1561 0.23 +0.6
1,615,956 + B158DRAFT_1561 0.23 -0.2
1,615,964 - B158DRAFT_1561 0.24 -0.2
1,615,964 - B158DRAFT_1561 0.24 -0.2
1,615,964 - B158DRAFT_1561 0.24 -1.1
1,615,964 - B158DRAFT_1561 0.24 -0.4
1,615,990 - B158DRAFT_1561 0.26 -0.3
1,615,990 - B158DRAFT_1561 0.26 -0.1
1,616,079 + B158DRAFT_1561 0.32 +0.5
1,616,162 + B158DRAFT_1561 0.39 -0.2
1,616,170 - B158DRAFT_1561 0.39 -0.0
1,616,188 - B158DRAFT_1561 0.40 +0.2
1,616,216 + B158DRAFT_1561 0.43 +0.1
1,616,224 - B158DRAFT_1561 0.43 +0.1
1,616,260 + B158DRAFT_1561 0.46 -0.1
1,616,268 - B158DRAFT_1561 0.46 +0.4
1,616,268 - B158DRAFT_1561 0.46 +0.5
1,616,268 - B158DRAFT_1561 0.46 +0.2
1,616,268 - B158DRAFT_1561 0.46 +0.2
1,616,276 - B158DRAFT_1561 0.47 +0.7
1,616,287 - B158DRAFT_1561 0.48 +0.0
1,616,365 + B158DRAFT_1561 0.53 -0.2
1,616,373 - B158DRAFT_1561 0.54 +1.3
1,616,497 + B158DRAFT_1561 0.63 -0.0
1,616,555 - B158DRAFT_1561 0.67 -0.5
1,616,602 + B158DRAFT_1561 0.71 -0.3
1,616,602 + B158DRAFT_1561 0.71 -0.3
1,616,602 + B158DRAFT_1561 0.71 +0.1
1,616,602 + B158DRAFT_1561 0.71 -0.6
1,616,602 + B158DRAFT_1561 0.71 -0.1
1,616,602 + B158DRAFT_1561 0.71 -1.0
1,616,602 + B158DRAFT_1561 0.71 -2.0
1,616,602 + B158DRAFT_1561 0.71 +0.1
1,616,602 + B158DRAFT_1561 0.71 -0.4
1,616,610 - B158DRAFT_1561 0.71 +0.0
1,616,610 - B158DRAFT_1561 0.71 -0.7
1,616,610 - B158DRAFT_1561 0.71 +0.1
1,616,610 - B158DRAFT_1561 0.71 -0.7
1,616,620 + B158DRAFT_1561 0.72 +0.1
1,616,689 + B158DRAFT_1561 0.77 -0.5
1,616,696 - B158DRAFT_1561 0.78 -0.1
1,616,722 - B158DRAFT_1561 0.80 +1.2
1,616,776 - B158DRAFT_1561 0.84 +0.1
1,616,823 - B158DRAFT_1561 0.87 -0.1
1,616,889 + -0.7
1,616,890 - -0.3
1,616,959 + -1.6
1,616,959 + -0.2
1,616,969 + -0.4
1,616,969 + +0.1
1,616,977 - -1.5
1,617,006 + -0.0
1,617,006 + -0.1
1,617,006 + -0.2
1,617,014 - -0.5
1,617,014 - -0.1
1,617,014 - -0.2
1,617,018 + -0.4
1,617,026 - +0.1
1,617,178 + B158DRAFT_1562 0.18 -0.4
1,617,179 + B158DRAFT_1562 0.18 -1.0
1,617,194 - B158DRAFT_1562 0.20 -0.4
1,617,274 - B158DRAFT_1562 0.31 -1.5
1,617,323 + B158DRAFT_1562 0.38 +0.1
1,617,373 - B158DRAFT_1562 0.45 -0.4
1,617,422 + B158DRAFT_1562 0.52 +0.2
1,617,440 + B158DRAFT_1562 0.54 -2.0
1,617,556 - B158DRAFT_1562 0.70 +0.0
1,617,613 - B158DRAFT_1562 0.78 -0.3
1,617,633 + B158DRAFT_1562 0.81 +0.4
1,617,633 + B158DRAFT_1562 0.81 -0.4
1,617,641 - B158DRAFT_1562 0.82 -0.9
1,617,641 - B158DRAFT_1562 0.82 -0.7
1,617,651 - B158DRAFT_1562 0.83 -0.4
1,617,664 + B158DRAFT_1562 0.85 +0.1
1,617,677 + B158DRAFT_1562 0.87 +0.2
1,617,873 + +0.1
1,617,881 - -0.0

Or see this region's nucleotide sequence