Experiment: m.b. A22 0.0109375 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1247 and B158DRAFT_1248 overlap by 4 nucleotides B158DRAFT_1248 and B158DRAFT_1249 are separated by 148 nucleotides B158DRAFT_1249 and B158DRAFT_1250 are separated by 260 nucleotides
B158DRAFT_1247: B158DRAFT_1247 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10), at 1,286,885 to 1,288,306
_1247
B158DRAFT_1248: B158DRAFT_1248 - cytochrome d oxidase, subunit II (cydB), at 1,288,303 to 1,289,319
_1248
B158DRAFT_1249: B158DRAFT_1249 - Lactoylglutathione lyase and related lyases, at 1,289,468 to 1,289,845
_1249
B158DRAFT_1250: B158DRAFT_1250 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,290,106 to 1,291,107
_1250
Position (kb)
1288
1289
1290 Strain fitness (log2 ratio)
-1
0
1
2 at 1287.314 kb on - strand, within B158DRAFT_1247 at 1287.429 kb on - strand, within B158DRAFT_1247 at 1287.429 kb on - strand, within B158DRAFT_1247 at 1287.445 kb on + strand, within B158DRAFT_1247 at 1287.498 kb on - strand, within B158DRAFT_1247 at 1287.589 kb on - strand, within B158DRAFT_1247 at 1287.599 kb on - strand, within B158DRAFT_1247 at 1287.648 kb on - strand, within B158DRAFT_1247 at 1287.648 kb on - strand, within B158DRAFT_1247 at 1287.750 kb on - strand, within B158DRAFT_1247 at 1287.808 kb on + strand, within B158DRAFT_1247 at 1287.859 kb on + strand, within B158DRAFT_1247 at 1287.867 kb on - strand, within B158DRAFT_1247 at 1287.906 kb on + strand, within B158DRAFT_1247 at 1287.913 kb on + strand, within B158DRAFT_1247 at 1287.919 kb on - strand, within B158DRAFT_1247 at 1287.959 kb on + strand, within B158DRAFT_1247 at 1287.959 kb on + strand, within B158DRAFT_1247 at 1287.959 kb on + strand, within B158DRAFT_1247 at 1287.959 kb on + strand, within B158DRAFT_1247 at 1287.967 kb on + strand, within B158DRAFT_1247 at 1287.967 kb on + strand, within B158DRAFT_1247 at 1287.967 kb on - strand, within B158DRAFT_1247 at 1287.967 kb on - strand, within B158DRAFT_1247 at 1287.967 kb on - strand, within B158DRAFT_1247 at 1287.967 kb on - strand, within B158DRAFT_1247 at 1287.967 kb on - strand, within B158DRAFT_1247 at 1287.967 kb on - strand, within B158DRAFT_1247 at 1287.993 kb on - strand, within B158DRAFT_1247 at 1288.043 kb on + strand, within B158DRAFT_1247 at 1288.043 kb on + strand, within B158DRAFT_1247 at 1288.049 kb on + strand, within B158DRAFT_1247 at 1288.069 kb on + strand, within B158DRAFT_1247 at 1288.069 kb on + strand, within B158DRAFT_1247 at 1288.069 kb on + strand, within B158DRAFT_1247 at 1288.069 kb on + strand, within B158DRAFT_1247 at 1288.077 kb on - strand, within B158DRAFT_1247 at 1288.077 kb on - strand, within B158DRAFT_1247 at 1288.077 kb on - strand, within B158DRAFT_1247 at 1288.077 kb on - strand, within B158DRAFT_1247 at 1288.077 kb on - strand, within B158DRAFT_1247 at 1288.077 kb on - strand, within B158DRAFT_1247 at 1288.156 kb on + strand, within B158DRAFT_1247 at 1288.164 kb on - strand at 1288.171 kb on + strand at 1288.179 kb on - strand at 1288.201 kb on + strand at 1288.246 kb on + strand at 1288.326 kb on - strand at 1288.348 kb on + strand at 1288.373 kb on + strand at 1288.450 kb on + strand, within B158DRAFT_1248 at 1288.460 kb on + strand, within B158DRAFT_1248 at 1288.468 kb on - strand, within B158DRAFT_1248 at 1288.508 kb on - strand, within B158DRAFT_1248 at 1288.518 kb on - strand, within B158DRAFT_1248 at 1288.527 kb on + strand, within B158DRAFT_1248 at 1288.536 kb on + strand, within B158DRAFT_1248 at 1288.536 kb on + strand, within B158DRAFT_1248 at 1288.558 kb on + strand, within B158DRAFT_1248 at 1288.607 kb on + strand, within B158DRAFT_1248 at 1288.647 kb on + strand, within B158DRAFT_1248 at 1288.655 kb on - strand, within B158DRAFT_1248 at 1288.660 kb on - strand, within B158DRAFT_1248 at 1288.691 kb on + strand, within B158DRAFT_1248 at 1288.696 kb on + strand, within B158DRAFT_1248 at 1288.721 kb on - strand, within B158DRAFT_1248 at 1288.728 kb on + strand, within B158DRAFT_1248 at 1288.728 kb on + strand, within B158DRAFT_1248 at 1288.728 kb on + strand, within B158DRAFT_1248 at 1288.728 kb on + strand, within B158DRAFT_1248 at 1288.728 kb on + strand, within B158DRAFT_1248 at 1288.730 kb on + strand, within B158DRAFT_1248 at 1288.736 kb on - strand, within B158DRAFT_1248 at 1288.736 kb on - strand, within B158DRAFT_1248 at 1289.042 kb on - strand, within B158DRAFT_1248 at 1289.042 kb on - strand, within B158DRAFT_1248 at 1289.042 kb on - strand, within B158DRAFT_1248 at 1289.073 kb on - strand, within B158DRAFT_1248 at 1289.136 kb on - strand, within B158DRAFT_1248 at 1289.162 kb on - strand, within B158DRAFT_1248 at 1289.162 kb on - strand, within B158DRAFT_1248 at 1289.186 kb on + strand, within B158DRAFT_1248 at 1289.242 kb on - strand at 1289.301 kb on + strand at 1289.323 kb on + strand at 1289.342 kb on + strand at 1289.350 kb on - strand at 1289.350 kb on - strand at 1289.387 kb on - strand at 1289.407 kb on - strand at 1289.412 kb on - strand at 1289.425 kb on + strand at 1289.702 kb on + strand, within B158DRAFT_1249 at 1289.702 kb on + strand, within B158DRAFT_1249 at 1289.782 kb on + strand, within B158DRAFT_1249 at 1289.796 kb on + strand, within B158DRAFT_1249 at 1289.806 kb on + strand, within B158DRAFT_1249 at 1289.812 kb on + strand at 1289.820 kb on - strand at 1289.820 kb on - strand at 1289.820 kb on - strand at 1289.820 kb on - strand at 1290.025 kb on + strand at 1290.039 kb on + strand at 1290.047 kb on - strand at 1290.065 kb on + strand at 1290.066 kb on - strand at 1290.109 kb on + strand at 1290.109 kb on + strand at 1290.109 kb on + strand at 1290.109 kb on + strand at 1290.117 kb on - strand at 1290.117 kb on - strand at 1290.117 kb on - strand at 1290.117 kb on - strand at 1290.117 kb on - strand at 1290.117 kb on - strand at 1290.117 kb on - strand at 1290.117 kb on - strand at 1290.131 kb on + strand at 1290.182 kb on + strand at 1290.207 kb on - strand, within B158DRAFT_1250 at 1290.247 kb on + strand, within B158DRAFT_1250
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.0109375 mg/ml remove 1,287,314 - B158DRAFT_1247 0.30 -0.3 1,287,429 - B158DRAFT_1247 0.38 +0.9 1,287,429 - B158DRAFT_1247 0.38 +0.1 1,287,445 + B158DRAFT_1247 0.39 +1.3 1,287,498 - B158DRAFT_1247 0.43 +0.3 1,287,589 - B158DRAFT_1247 0.50 +0.7 1,287,599 - B158DRAFT_1247 0.50 +1.2 1,287,648 - B158DRAFT_1247 0.54 +0.1 1,287,648 - B158DRAFT_1247 0.54 +1.3 1,287,750 - B158DRAFT_1247 0.61 +0.8 1,287,808 + B158DRAFT_1247 0.65 +1.2 1,287,859 + B158DRAFT_1247 0.68 +0.5 1,287,867 - B158DRAFT_1247 0.69 +1.3 1,287,906 + B158DRAFT_1247 0.72 +0.9 1,287,913 + B158DRAFT_1247 0.72 +1.6 1,287,919 - B158DRAFT_1247 0.73 +0.6 1,287,959 + B158DRAFT_1247 0.76 +1.1 1,287,959 + B158DRAFT_1247 0.76 +1.7 1,287,959 + B158DRAFT_1247 0.76 +0.2 1,287,959 + B158DRAFT_1247 0.76 +1.2 1,287,967 + B158DRAFT_1247 0.76 +0.6 1,287,967 + B158DRAFT_1247 0.76 +0.7 1,287,967 - B158DRAFT_1247 0.76 +1.0 1,287,967 - B158DRAFT_1247 0.76 +0.5 1,287,967 - B158DRAFT_1247 0.76 +0.5 1,287,967 - B158DRAFT_1247 0.76 +0.5 1,287,967 - B158DRAFT_1247 0.76 +1.0 1,287,967 - B158DRAFT_1247 0.76 +1.6 1,287,993 - B158DRAFT_1247 0.78 +0.9 1,288,043 + B158DRAFT_1247 0.81 +2.2 1,288,043 + B158DRAFT_1247 0.81 +1.5 1,288,049 + B158DRAFT_1247 0.82 +0.0 1,288,069 + B158DRAFT_1247 0.83 +0.8 1,288,069 + B158DRAFT_1247 0.83 +2.2 1,288,069 + B158DRAFT_1247 0.83 +1.5 1,288,069 + B158DRAFT_1247 0.83 +0.8 1,288,077 - B158DRAFT_1247 0.84 +0.6 1,288,077 - B158DRAFT_1247 0.84 +0.5 1,288,077 - B158DRAFT_1247 0.84 +1.0 1,288,077 - B158DRAFT_1247 0.84 +0.1 1,288,077 - B158DRAFT_1247 0.84 +0.4 1,288,077 - B158DRAFT_1247 0.84 +1.0 1,288,156 + B158DRAFT_1247 0.89 +0.1 1,288,164 - +1.0 1,288,171 + +1.2 1,288,179 - +0.7 1,288,201 + +1.0 1,288,246 + +1.9 1,288,326 - +1.3 1,288,348 + +1.0 1,288,373 + +0.5 1,288,450 + B158DRAFT_1248 0.14 +0.8 1,288,460 + B158DRAFT_1248 0.15 +0.7 1,288,468 - B158DRAFT_1248 0.16 +1.1 1,288,508 - B158DRAFT_1248 0.20 +1.3 1,288,518 - B158DRAFT_1248 0.21 +0.6 1,288,527 + B158DRAFT_1248 0.22 +0.5 1,288,536 + B158DRAFT_1248 0.23 +0.8 1,288,536 + B158DRAFT_1248 0.23 +0.8 1,288,558 + B158DRAFT_1248 0.25 +1.0 1,288,607 + B158DRAFT_1248 0.30 +0.4 1,288,647 + B158DRAFT_1248 0.34 +0.0 1,288,655 - B158DRAFT_1248 0.35 +1.0 1,288,660 - B158DRAFT_1248 0.35 +1.2 1,288,691 + B158DRAFT_1248 0.38 +0.6 1,288,696 + B158DRAFT_1248 0.39 -0.1 1,288,721 - B158DRAFT_1248 0.41 +0.7 1,288,728 + B158DRAFT_1248 0.42 +1.4 1,288,728 + B158DRAFT_1248 0.42 +0.8 1,288,728 + B158DRAFT_1248 0.42 +1.1 1,288,728 + B158DRAFT_1248 0.42 +0.6 1,288,728 + B158DRAFT_1248 0.42 +0.8 1,288,730 + B158DRAFT_1248 0.42 +0.9 1,288,736 - B158DRAFT_1248 0.43 +0.6 1,288,736 - B158DRAFT_1248 0.43 +0.9 1,289,042 - B158DRAFT_1248 0.73 +1.0 1,289,042 - B158DRAFT_1248 0.73 +0.1 1,289,042 - B158DRAFT_1248 0.73 +0.5 1,289,073 - B158DRAFT_1248 0.76 +1.3 1,289,136 - B158DRAFT_1248 0.82 +1.3 1,289,162 - B158DRAFT_1248 0.84 +0.7 1,289,162 - B158DRAFT_1248 0.84 +0.2 1,289,186 + B158DRAFT_1248 0.87 +0.7 1,289,242 - +0.5 1,289,301 + +0.9 1,289,323 + -0.3 1,289,342 + +0.5 1,289,350 - +0.5 1,289,350 - +1.0 1,289,387 - +0.9 1,289,407 - +0.8 1,289,412 - +0.5 1,289,425 + +0.8 1,289,702 + B158DRAFT_1249 0.62 -0.3 1,289,702 + B158DRAFT_1249 0.62 -0.3 1,289,782 + B158DRAFT_1249 0.83 +0.3 1,289,796 + B158DRAFT_1249 0.87 -0.7 1,289,806 + B158DRAFT_1249 0.89 -0.3 1,289,812 + -0.4 1,289,820 - +0.1 1,289,820 - -0.5 1,289,820 - +0.0 1,289,820 - -1.1 1,290,025 + -0.0 1,290,039 + +0.1 1,290,047 - +0.0 1,290,065 + +0.1 1,290,066 - -0.0 1,290,109 + -0.5 1,290,109 + -1.2 1,290,109 + -0.4 1,290,109 + -0.3 1,290,117 - -0.2 1,290,117 - -0.6 1,290,117 - -0.9 1,290,117 - -0.1 1,290,117 - +0.7 1,290,117 - +0.6 1,290,117 - +1.0 1,290,117 - -0.7 1,290,131 + -0.8 1,290,182 + -0.0 1,290,207 - B158DRAFT_1250 0.10 +1.0 1,290,247 + B158DRAFT_1250 0.14 +0.2
Or see this region's nucleotide sequence