Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0571

Experiment: m.b. A22 0.0109375 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0570 and B158DRAFT_0571 are separated by 27 nucleotidesB158DRAFT_0571 and B158DRAFT_0572 are separated by 69 nucleotidesB158DRAFT_0572 and B158DRAFT_0573 are separated by 3 nucleotides B158DRAFT_0570: B158DRAFT_0570 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 575,235 to 576,191 _0570 B158DRAFT_0571: B158DRAFT_0571 - hypothetical protein, at 576,219 to 577,136 _0571 B158DRAFT_0572: B158DRAFT_0572 - rRNA methylases, at 577,206 to 577,898 _0572 B158DRAFT_0573: B158DRAFT_0573 - endoribonuclease L-PSP, putative, at 577,902 to 578,288 _0573 Position (kb) 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 575.280 kb on - strandat 575.285 kb on + strandat 575.293 kb on - strandat 575.325 kb on - strandat 575.344 kb on + strand, within B158DRAFT_0570at 575.381 kb on + strand, within B158DRAFT_0570at 575.409 kb on - strand, within B158DRAFT_0570at 575.420 kb on + strand, within B158DRAFT_0570at 575.470 kb on - strand, within B158DRAFT_0570at 575.478 kb on - strand, within B158DRAFT_0570at 575.481 kb on + strand, within B158DRAFT_0570at 575.541 kb on - strand, within B158DRAFT_0570at 575.588 kb on + strand, within B158DRAFT_0570at 575.596 kb on - strand, within B158DRAFT_0570at 575.613 kb on + strand, within B158DRAFT_0570at 575.621 kb on - strand, within B158DRAFT_0570at 575.623 kb on + strand, within B158DRAFT_0570at 575.644 kb on - strand, within B158DRAFT_0570at 575.725 kb on + strand, within B158DRAFT_0570at 575.725 kb on + strand, within B158DRAFT_0570at 575.725 kb on + strand, within B158DRAFT_0570at 575.725 kb on + strand, within B158DRAFT_0570at 575.725 kb on + strand, within B158DRAFT_0570at 575.725 kb on + strand, within B158DRAFT_0570at 575.725 kb on + strand, within B158DRAFT_0570at 575.725 kb on + strand, within B158DRAFT_0570at 575.725 kb on + strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.733 kb on - strand, within B158DRAFT_0570at 575.759 kb on - strand, within B158DRAFT_0570at 575.775 kb on + strand, within B158DRAFT_0570at 575.792 kb on + strand, within B158DRAFT_0570at 575.792 kb on + strand, within B158DRAFT_0570at 575.800 kb on - strand, within B158DRAFT_0570at 575.834 kb on - strand, within B158DRAFT_0570at 575.837 kb on - strand, within B158DRAFT_0570at 575.896 kb on + strand, within B158DRAFT_0570at 575.896 kb on + strand, within B158DRAFT_0570at 575.899 kb on - strand, within B158DRAFT_0570at 575.951 kb on + strand, within B158DRAFT_0570at 575.967 kb on + strand, within B158DRAFT_0570at 576.055 kb on - strand, within B158DRAFT_0570at 576.064 kb on - strand, within B158DRAFT_0570at 576.075 kb on - strand, within B158DRAFT_0570at 576.243 kb on - strandat 576.251 kb on - strandat 576.251 kb on - strandat 576.373 kb on + strand, within B158DRAFT_0571at 576.383 kb on + strand, within B158DRAFT_0571at 576.466 kb on + strand, within B158DRAFT_0571at 576.474 kb on - strand, within B158DRAFT_0571at 576.527 kb on + strand, within B158DRAFT_0571at 576.543 kb on - strand, within B158DRAFT_0571at 576.543 kb on - strand, within B158DRAFT_0571at 576.687 kb on - strand, within B158DRAFT_0571at 576.721 kb on - strand, within B158DRAFT_0571at 576.729 kb on + strand, within B158DRAFT_0571at 576.729 kb on + strand, within B158DRAFT_0571at 576.729 kb on + strand, within B158DRAFT_0571at 576.729 kb on + strand, within B158DRAFT_0571at 576.737 kb on - strand, within B158DRAFT_0571at 576.737 kb on - strand, within B158DRAFT_0571at 576.737 kb on - strand, within B158DRAFT_0571at 576.769 kb on - strand, within B158DRAFT_0571at 576.815 kb on - strand, within B158DRAFT_0571at 576.815 kb on - strand, within B158DRAFT_0571at 576.952 kb on + strand, within B158DRAFT_0571at 577.078 kb on + strandat 577.103 kb on + strandat 577.383 kb on - strand, within B158DRAFT_0572at 577.383 kb on - strand, within B158DRAFT_0572at 577.526 kb on + strand, within B158DRAFT_0572at 577.560 kb on - strand, within B158DRAFT_0572at 577.680 kb on - strand, within B158DRAFT_0572at 577.694 kb on + strand, within B158DRAFT_0572at 577.704 kb on + strand, within B158DRAFT_0572at 577.704 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.712 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.766 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.809 kb on + strand, within B158DRAFT_0572at 577.817 kb on - strand, within B158DRAFT_0572at 577.835 kb on - strandat 577.837 kb on + strandat 577.837 kb on + strandat 577.866 kb on - strandat 577.890 kb on - strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.948 kb on + strand, within B158DRAFT_0573at 577.948 kb on + strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.995 kb on - strand, within B158DRAFT_0573at 577.997 kb on + strand, within B158DRAFT_0573at 578.086 kb on - strand, within B158DRAFT_0573at 578.098 kb on + strand, within B158DRAFT_0573at 578.098 kb on + strand, within B158DRAFT_0573

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.0109375 mg/ml
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575,280 - +0.3
575,285 + -0.1
575,293 - -1.0
575,325 - +0.2
575,344 + B158DRAFT_0570 0.11 +1.2
575,381 + B158DRAFT_0570 0.15 -0.1
575,409 - B158DRAFT_0570 0.18 -0.4
575,420 + B158DRAFT_0570 0.19 -0.3
575,470 - B158DRAFT_0570 0.25 +0.2
575,478 - B158DRAFT_0570 0.25 -0.8
575,481 + B158DRAFT_0570 0.26 -0.2
575,541 - B158DRAFT_0570 0.32 -0.1
575,588 + B158DRAFT_0570 0.37 -0.3
575,596 - B158DRAFT_0570 0.38 +0.0
575,613 + B158DRAFT_0570 0.39 -0.9
575,621 - B158DRAFT_0570 0.40 +0.0
575,623 + B158DRAFT_0570 0.41 -0.8
575,644 - B158DRAFT_0570 0.43 -0.2
575,725 + B158DRAFT_0570 0.51 -0.1
575,725 + B158DRAFT_0570 0.51 +0.0
575,725 + B158DRAFT_0570 0.51 +0.1
575,725 + B158DRAFT_0570 0.51 +0.5
575,725 + B158DRAFT_0570 0.51 -0.1
575,725 + B158DRAFT_0570 0.51 +0.0
575,725 + B158DRAFT_0570 0.51 -0.1
575,725 + B158DRAFT_0570 0.51 -0.1
575,725 + B158DRAFT_0570 0.51 -0.5
575,733 - B158DRAFT_0570 0.52 -0.8
575,733 - B158DRAFT_0570 0.52 -0.4
575,733 - B158DRAFT_0570 0.52 +0.2
575,733 - B158DRAFT_0570 0.52 +0.5
575,733 - B158DRAFT_0570 0.52 -1.1
575,733 - B158DRAFT_0570 0.52 -0.5
575,733 - B158DRAFT_0570 0.52 -0.7
575,733 - B158DRAFT_0570 0.52 -0.1
575,733 - B158DRAFT_0570 0.52 -1.0
575,733 - B158DRAFT_0570 0.52 +0.1
575,733 - B158DRAFT_0570 0.52 +0.1
575,733 - B158DRAFT_0570 0.52 -0.6
575,733 - B158DRAFT_0570 0.52 +0.0
575,733 - B158DRAFT_0570 0.52 -0.2
575,733 - B158DRAFT_0570 0.52 -0.7
575,759 - B158DRAFT_0570 0.55 -0.3
575,775 + B158DRAFT_0570 0.56 -0.5
575,792 + B158DRAFT_0570 0.58 -0.2
575,792 + B158DRAFT_0570 0.58 -0.2
575,800 - B158DRAFT_0570 0.59 -2.9
575,834 - B158DRAFT_0570 0.63 +0.4
575,837 - B158DRAFT_0570 0.63 +0.1
575,896 + B158DRAFT_0570 0.69 -0.3
575,896 + B158DRAFT_0570 0.69 +1.7
575,899 - B158DRAFT_0570 0.69 +0.5
575,951 + B158DRAFT_0570 0.75 +0.2
575,967 + B158DRAFT_0570 0.76 -0.2
576,055 - B158DRAFT_0570 0.86 +0.1
576,064 - B158DRAFT_0570 0.87 -0.2
576,075 - B158DRAFT_0570 0.88 +1.1
576,243 - +0.0
576,251 - -0.6
576,251 - -1.3
576,373 + B158DRAFT_0571 0.17 +0.2
576,383 + B158DRAFT_0571 0.18 -0.2
576,466 + B158DRAFT_0571 0.27 -0.0
576,474 - B158DRAFT_0571 0.28 +0.0
576,527 + B158DRAFT_0571 0.34 -0.5
576,543 - B158DRAFT_0571 0.35 -1.4
576,543 - B158DRAFT_0571 0.35 +0.0
576,687 - B158DRAFT_0571 0.51 +0.4
576,721 - B158DRAFT_0571 0.55 -0.0
576,729 + B158DRAFT_0571 0.56 +0.4
576,729 + B158DRAFT_0571 0.56 +0.1
576,729 + B158DRAFT_0571 0.56 -0.2
576,729 + B158DRAFT_0571 0.56 -0.3
576,737 - B158DRAFT_0571 0.56 +0.2
576,737 - B158DRAFT_0571 0.56 +0.0
576,737 - B158DRAFT_0571 0.56 -0.2
576,769 - B158DRAFT_0571 0.60 +0.1
576,815 - B158DRAFT_0571 0.65 +0.2
576,815 - B158DRAFT_0571 0.65 -0.4
576,952 + B158DRAFT_0571 0.80 +0.0
577,078 + -0.3
577,103 + -0.1
577,383 - B158DRAFT_0572 0.26 -0.3
577,383 - B158DRAFT_0572 0.26 -0.4
577,526 + B158DRAFT_0572 0.46 -0.5
577,560 - B158DRAFT_0572 0.51 -1.0
577,680 - B158DRAFT_0572 0.68 -1.2
577,694 + B158DRAFT_0572 0.70 -0.2
577,704 + B158DRAFT_0572 0.72 +0.1
577,704 + B158DRAFT_0572 0.72 -0.8
577,709 + B158DRAFT_0572 0.73 -0.2
577,709 + B158DRAFT_0572 0.73 -0.2
577,709 + B158DRAFT_0572 0.73 -0.6
577,709 + B158DRAFT_0572 0.73 -1.1
577,709 + B158DRAFT_0572 0.73 +0.1
577,712 - B158DRAFT_0572 0.73 +0.2
577,717 - B158DRAFT_0572 0.74 -0.3
577,717 - B158DRAFT_0572 0.74 -0.0
577,717 - B158DRAFT_0572 0.74 +2.3
577,717 - B158DRAFT_0572 0.74 -0.1
577,717 - B158DRAFT_0572 0.74 -0.4
577,766 + B158DRAFT_0572 0.81 +0.0
577,794 + B158DRAFT_0572 0.85 -0.4
577,794 + B158DRAFT_0572 0.85 -0.0
577,794 + B158DRAFT_0572 0.85 +0.2
577,794 + B158DRAFT_0572 0.85 +0.4
577,802 - B158DRAFT_0572 0.86 +0.2
577,802 - B158DRAFT_0572 0.86 +0.2
577,802 - B158DRAFT_0572 0.86 +0.1
577,802 - B158DRAFT_0572 0.86 -1.7
577,802 - B158DRAFT_0572 0.86 -0.1
577,809 + B158DRAFT_0572 0.87 -0.0
577,817 - B158DRAFT_0572 0.88 -1.3
577,835 - -0.4
577,837 + -0.2
577,837 + -0.4
577,866 - +0.1
577,890 - +0.1
577,900 + -0.6
577,900 + -0.1
577,900 + -0.1
577,900 + +0.2
577,900 + +0.0
577,900 + -0.4
577,900 + +0.0
577,908 - +0.0
577,908 - -0.3
577,908 - -0.9
577,908 - +0.1
577,908 - -0.1
577,908 - +0.4
577,908 - +0.2
577,948 + B158DRAFT_0573 0.12 +0.2
577,948 + B158DRAFT_0573 0.12 +0.0
577,956 - B158DRAFT_0573 0.14 +0.8
577,956 - B158DRAFT_0573 0.14 +0.7
577,956 - B158DRAFT_0573 0.14 -0.3
577,956 - B158DRAFT_0573 0.14 +0.7
577,995 - B158DRAFT_0573 0.24 -0.2
577,997 + B158DRAFT_0573 0.25 -0.5
578,086 - B158DRAFT_0573 0.48 +0.0
578,098 + B158DRAFT_0573 0.51 -0.0
578,098 + B158DRAFT_0573 0.51 -0.6

Or see this region's nucleotide sequence