Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1819

Experiment: m.b. Bacitracin 1.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1817 and B158DRAFT_1818 are separated by 37 nucleotidesB158DRAFT_1818 and B158DRAFT_1819 are separated by 2 nucleotidesB158DRAFT_1819 and B158DRAFT_1820 are separated by 6 nucleotides B158DRAFT_1817: B158DRAFT_1817 - seryl-tRNA synthetase (EC 6.1.1.11), at 1,915,438 to 1,916,706 _1817 B158DRAFT_1818: B158DRAFT_1818 - protein CrcB, at 1,916,744 to 1,917,127 _1818 B158DRAFT_1819: B158DRAFT_1819 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 1,917,130 to 1,918,467 _1819 B158DRAFT_1820: B158DRAFT_1820 - periplasmic chaperone LolA, at 1,918,474 to 1,919,157 _1820 Position (kb) 1917 1918 1919Strain fitness (log2 ratio) -3 -2 -1 0 1at 1916.829 kb on + strand, within B158DRAFT_1818at 1916.829 kb on + strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.864 kb on + strand, within B158DRAFT_1818at 1917.015 kb on - strand, within B158DRAFT_1818at 1917.093 kb on - strandat 1917.128 kb on + strandat 1917.152 kb on + strandat 1917.160 kb on - strandat 1917.160 kb on - strandat 1917.166 kb on - strandat 1917.166 kb on - strandat 1917.205 kb on + strandat 1917.205 kb on + strandat 1917.220 kb on + strandat 1917.220 kb on - strandat 1917.220 kb on - strandat 1917.220 kb on - strandat 1917.220 kb on - strandat 1917.261 kb on - strandat 1917.303 kb on - strand, within B158DRAFT_1819at 1917.355 kb on + strand, within B158DRAFT_1819at 1917.418 kb on - strand, within B158DRAFT_1819at 1917.430 kb on - strand, within B158DRAFT_1819at 1917.488 kb on - strand, within B158DRAFT_1819at 1917.528 kb on + strand, within B158DRAFT_1819at 1917.528 kb on + strand, within B158DRAFT_1819at 1917.529 kb on + strand, within B158DRAFT_1819at 1917.537 kb on - strand, within B158DRAFT_1819at 1917.691 kb on - strand, within B158DRAFT_1819at 1917.738 kb on + strand, within B158DRAFT_1819at 1917.902 kb on + strand, within B158DRAFT_1819at 1918.028 kb on - strand, within B158DRAFT_1819at 1918.033 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.079 kb on - strand, within B158DRAFT_1819at 1918.079 kb on - strand, within B158DRAFT_1819at 1918.104 kb on - strand, within B158DRAFT_1819at 1918.151 kb on + strand, within B158DRAFT_1819at 1918.153 kb on - strand, within B158DRAFT_1819at 1918.197 kb on + strand, within B158DRAFT_1819at 1918.197 kb on - strand, within B158DRAFT_1819at 1918.215 kb on - strand, within B158DRAFT_1819at 1918.283 kb on + strand, within B158DRAFT_1819at 1918.369 kb on + strandat 1918.377 kb on - strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.538 kb on - strandat 1918.538 kb on - strandat 1918.538 kb on - strandat 1919.189 kb on + strandat 1919.189 kb on + strandat 1919.189 kb on + strandat 1919.189 kb on + strandat 1919.197 kb on - strandat 1919.197 kb on - strandat 1919.207 kb on - strandat 1919.237 kb on + strandat 1919.263 kb on + strandat 1919.263 kb on + strandat 1919.271 kb on - strandat 1919.271 kb on - strandat 1919.403 kb on + strandat 1919.419 kb on + strandat 1919.440 kb on + strandat 1919.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 1.5 mg/ml
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1,916,829 + B158DRAFT_1818 0.22 -0.1
1,916,829 + B158DRAFT_1818 0.22 -0.3
1,916,837 - B158DRAFT_1818 0.24 -1.3
1,916,837 - B158DRAFT_1818 0.24 -0.2
1,916,837 - B158DRAFT_1818 0.24 -0.8
1,916,837 - B158DRAFT_1818 0.24 -0.8
1,916,864 + B158DRAFT_1818 0.31 -0.2
1,917,015 - B158DRAFT_1818 0.71 -0.9
1,917,093 - -0.2
1,917,128 + -0.4
1,917,152 + -0.5
1,917,160 - -0.2
1,917,160 - -0.2
1,917,166 - +0.1
1,917,166 - -0.2
1,917,205 + -1.2
1,917,205 + -0.1
1,917,220 + -0.4
1,917,220 - -0.3
1,917,220 - -0.6
1,917,220 - -1.0
1,917,220 - +0.0
1,917,261 - +0.0
1,917,303 - B158DRAFT_1819 0.13 +0.3
1,917,355 + B158DRAFT_1819 0.17 -0.1
1,917,418 - B158DRAFT_1819 0.22 -0.1
1,917,430 - B158DRAFT_1819 0.22 +0.7
1,917,488 - B158DRAFT_1819 0.27 -2.8
1,917,528 + B158DRAFT_1819 0.30 -0.0
1,917,528 + B158DRAFT_1819 0.30 -0.9
1,917,529 + B158DRAFT_1819 0.30 -1.8
1,917,537 - B158DRAFT_1819 0.30 -0.2
1,917,691 - B158DRAFT_1819 0.42 -0.4
1,917,738 + B158DRAFT_1819 0.45 +1.3
1,917,902 + B158DRAFT_1819 0.58 -0.2
1,918,028 - B158DRAFT_1819 0.67 +0.3
1,918,033 + B158DRAFT_1819 0.67 -1.2
1,918,071 + B158DRAFT_1819 0.70 -0.6
1,918,071 + B158DRAFT_1819 0.70 -0.2
1,918,071 + B158DRAFT_1819 0.70 +0.6
1,918,071 + B158DRAFT_1819 0.70 -0.7
1,918,079 - B158DRAFT_1819 0.71 -0.2
1,918,079 - B158DRAFT_1819 0.71 -0.3
1,918,104 - B158DRAFT_1819 0.73 -0.6
1,918,151 + B158DRAFT_1819 0.76 -0.0
1,918,153 - B158DRAFT_1819 0.76 -0.7
1,918,197 + B158DRAFT_1819 0.80 -0.2
1,918,197 - B158DRAFT_1819 0.80 +0.3
1,918,215 - B158DRAFT_1819 0.81 +1.3
1,918,283 + B158DRAFT_1819 0.86 -0.4
1,918,369 + +0.3
1,918,377 - +0.1
1,918,530 + -0.3
1,918,530 + -0.7
1,918,530 + -0.4
1,918,530 + -1.0
1,918,530 + -0.8
1,918,530 + -0.3
1,918,530 + -0.4
1,918,530 + -0.4
1,918,538 - +0.2
1,918,538 - -0.2
1,918,538 - -0.3
1,919,189 + -0.2
1,919,189 + -0.8
1,919,189 + +0.1
1,919,189 + -0.2
1,919,197 - +0.6
1,919,197 - -0.2
1,919,207 - +0.0
1,919,237 + -1.9
1,919,263 + -1.7
1,919,263 + -2.2
1,919,271 - -0.1
1,919,271 - +0.1
1,919,403 + -0.8
1,919,419 + -1.0
1,919,440 + -1.7
1,919,448 - -0.4

Or see this region's nucleotide sequence