Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2275

Experiment: m.b. benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2273 and B158DRAFT_2274 are separated by 88 nucleotidesB158DRAFT_2274 and B158DRAFT_2275 are separated by 68 nucleotidesB158DRAFT_2275 and B158DRAFT_2276 are separated by 373 nucleotides B158DRAFT_2273: B158DRAFT_2273 - hypothetical protein, at 437,685 to 438,716 _2273 B158DRAFT_2274: B158DRAFT_2274 - Predicted 3'-5' exonuclease related to the exonuclease domain of PolB, at 438,805 to 439,572 _2274 B158DRAFT_2275: B158DRAFT_2275 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 439,641 to 440,987 _2275 B158DRAFT_2276: B158DRAFT_2276 - hypothetical protein, at 441,361 to 441,960 _2276 Position (kb) 439 440 441Strain fitness (log2 ratio) -2 -1 0 1 2 3at 438.717 kb on + strandat 438.722 kb on + strandat 438.835 kb on + strandat 438.843 kb on + strandat 438.843 kb on + strandat 438.843 kb on - strandat 438.851 kb on - strandat 438.878 kb on - strandat 438.878 kb on - strandat 438.949 kb on - strand, within B158DRAFT_2274at 438.975 kb on - strand, within B158DRAFT_2274at 439.006 kb on - strand, within B158DRAFT_2274at 439.017 kb on + strand, within B158DRAFT_2274at 439.025 kb on + strand, within B158DRAFT_2274at 439.094 kb on + strand, within B158DRAFT_2274at 439.111 kb on + strand, within B158DRAFT_2274at 439.214 kb on - strand, within B158DRAFT_2274at 439.247 kb on + strand, within B158DRAFT_2274at 439.254 kb on - strand, within B158DRAFT_2274at 439.274 kb on + strand, within B158DRAFT_2274at 439.274 kb on + strand, within B158DRAFT_2274at 439.282 kb on - strand, within B158DRAFT_2274at 439.282 kb on - strand, within B158DRAFT_2274at 439.297 kb on - strand, within B158DRAFT_2274at 439.323 kb on + strand, within B158DRAFT_2274at 439.349 kb on - strand, within B158DRAFT_2274at 439.350 kb on - strand, within B158DRAFT_2274at 439.370 kb on + strand, within B158DRAFT_2274at 439.370 kb on + strand, within B158DRAFT_2274at 439.370 kb on + strand, within B158DRAFT_2274at 439.378 kb on - strand, within B158DRAFT_2274at 439.380 kb on + strand, within B158DRAFT_2274at 439.385 kb on + strand, within B158DRAFT_2274at 439.385 kb on + strand, within B158DRAFT_2274at 439.386 kb on + strand, within B158DRAFT_2274at 439.386 kb on + strand, within B158DRAFT_2274at 439.386 kb on + strand, within B158DRAFT_2274at 439.386 kb on + strand, within B158DRAFT_2274at 439.388 kb on - strand, within B158DRAFT_2274at 439.393 kb on - strand, within B158DRAFT_2274at 439.393 kb on - strand, within B158DRAFT_2274at 439.393 kb on - strand, within B158DRAFT_2274at 439.394 kb on - strand, within B158DRAFT_2274at 439.394 kb on - strand, within B158DRAFT_2274at 439.394 kb on - strand, within B158DRAFT_2274at 439.456 kb on - strand, within B158DRAFT_2274at 439.456 kb on - strand, within B158DRAFT_2274at 439.469 kb on + strand, within B158DRAFT_2274at 439.569 kb on - strandat 439.583 kb on + strandat 439.596 kb on + strandat 439.596 kb on + strandat 439.640 kb on - strandat 439.640 kb on - strandat 439.742 kb on - strandat 439.773 kb on + strandat 439.779 kb on + strand, within B158DRAFT_2275at 439.787 kb on - strand, within B158DRAFT_2275at 439.832 kb on - strand, within B158DRAFT_2275at 439.849 kb on + strand, within B158DRAFT_2275at 439.849 kb on + strand, within B158DRAFT_2275at 439.881 kb on + strand, within B158DRAFT_2275at 439.889 kb on + strand, within B158DRAFT_2275at 439.889 kb on + strand, within B158DRAFT_2275at 439.906 kb on + strand, within B158DRAFT_2275at 439.914 kb on - strand, within B158DRAFT_2275at 439.914 kb on - strand, within B158DRAFT_2275at 439.916 kb on - strand, within B158DRAFT_2275at 439.927 kb on - strand, within B158DRAFT_2275at 439.937 kb on - strand, within B158DRAFT_2275at 439.958 kb on + strand, within B158DRAFT_2275at 439.976 kb on + strand, within B158DRAFT_2275at 439.984 kb on - strand, within B158DRAFT_2275at 439.984 kb on - strand, within B158DRAFT_2275at 439.984 kb on - strand, within B158DRAFT_2275at 440.015 kb on + strand, within B158DRAFT_2275at 440.037 kb on + strand, within B158DRAFT_2275at 440.091 kb on + strand, within B158DRAFT_2275at 440.091 kb on + strand, within B158DRAFT_2275at 440.092 kb on + strand, within B158DRAFT_2275at 440.160 kb on - strand, within B158DRAFT_2275at 440.164 kb on + strand, within B158DRAFT_2275at 440.240 kb on + strand, within B158DRAFT_2275at 440.318 kb on - strand, within B158DRAFT_2275at 440.374 kb on - strand, within B158DRAFT_2275at 440.381 kb on - strand, within B158DRAFT_2275at 440.439 kb on - strand, within B158DRAFT_2275at 440.473 kb on + strand, within B158DRAFT_2275at 440.478 kb on + strand, within B158DRAFT_2275at 440.481 kb on - strand, within B158DRAFT_2275at 440.483 kb on + strand, within B158DRAFT_2275at 440.483 kb on + strand, within B158DRAFT_2275at 440.484 kb on - strand, within B158DRAFT_2275at 440.484 kb on - strand, within B158DRAFT_2275at 440.491 kb on - strand, within B158DRAFT_2275at 440.491 kb on - strand, within B158DRAFT_2275at 440.491 kb on - strand, within B158DRAFT_2275at 440.491 kb on - strand, within B158DRAFT_2275at 440.550 kb on - strand, within B158DRAFT_2275at 440.575 kb on - strand, within B158DRAFT_2275at 440.595 kb on + strand, within B158DRAFT_2275at 440.595 kb on + strand, within B158DRAFT_2275at 440.626 kb on + strand, within B158DRAFT_2275at 440.626 kb on + strand, within B158DRAFT_2275at 440.626 kb on + strand, within B158DRAFT_2275at 440.628 kb on + strand, within B158DRAFT_2275at 440.628 kb on + strand, within B158DRAFT_2275at 440.634 kb on - strand, within B158DRAFT_2275at 440.634 kb on - strand, within B158DRAFT_2275at 440.663 kb on + strand, within B158DRAFT_2275at 440.671 kb on - strand, within B158DRAFT_2275at 440.671 kb on - strand, within B158DRAFT_2275at 440.673 kb on + strand, within B158DRAFT_2275at 440.682 kb on + strand, within B158DRAFT_2275at 440.683 kb on - strand, within B158DRAFT_2275at 440.683 kb on - strand, within B158DRAFT_2275at 440.702 kb on - strand, within B158DRAFT_2275at 440.707 kb on + strand, within B158DRAFT_2275at 440.707 kb on + strand, within B158DRAFT_2275at 440.733 kb on - strand, within B158DRAFT_2275at 440.741 kb on - strand, within B158DRAFT_2275at 440.830 kb on - strand, within B158DRAFT_2275at 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.947 kb on + strandat 440.962 kb on - strandat 441.000 kb on - strandat 441.209 kb on + strandat 441.228 kb on + strandat 441.244 kb on - strandat 441.261 kb on + strandat 441.341 kb on + strandat 441.349 kb on - strandat 441.349 kb on - strandat 441.418 kb on + strandat 441.500 kb on + strand, within B158DRAFT_2276at 441.508 kb on - strand, within B158DRAFT_2276at 441.520 kb on + strand, within B158DRAFT_2276at 441.528 kb on - strand, within B158DRAFT_2276at 441.829 kb on + strand, within B158DRAFT_2276at 441.854 kb on - strand, within B158DRAFT_2276at 441.887 kb on + strand, within B158DRAFT_2276at 441.970 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.2 mg/ml
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438,717 + -2.0
438,722 + +0.6
438,835 + -0.4
438,843 + +0.0
438,843 + -0.1
438,843 - -0.7
438,851 - -0.4
438,878 - -0.5
438,878 - -0.5
438,949 - B158DRAFT_2274 0.19 +0.5
438,975 - B158DRAFT_2274 0.22 -0.4
439,006 - B158DRAFT_2274 0.26 +0.6
439,017 + B158DRAFT_2274 0.28 +0.0
439,025 + B158DRAFT_2274 0.29 +0.5
439,094 + B158DRAFT_2274 0.38 -0.5
439,111 + B158DRAFT_2274 0.40 +1.0
439,214 - B158DRAFT_2274 0.53 +0.3
439,247 + B158DRAFT_2274 0.58 -0.2
439,254 - B158DRAFT_2274 0.58 -0.2
439,274 + B158DRAFT_2274 0.61 +0.0
439,274 + B158DRAFT_2274 0.61 -0.6
439,282 - B158DRAFT_2274 0.62 +0.4
439,282 - B158DRAFT_2274 0.62 -0.1
439,297 - B158DRAFT_2274 0.64 -0.2
439,323 + B158DRAFT_2274 0.67 -0.0
439,349 - B158DRAFT_2274 0.71 -0.0
439,350 - B158DRAFT_2274 0.71 -0.1
439,370 + B158DRAFT_2274 0.74 +0.1
439,370 + B158DRAFT_2274 0.74 -0.2
439,370 + B158DRAFT_2274 0.74 -0.2
439,378 - B158DRAFT_2274 0.75 +0.1
439,380 + B158DRAFT_2274 0.75 +0.2
439,385 + B158DRAFT_2274 0.76 +0.5
439,385 + B158DRAFT_2274 0.76 -0.3
439,386 + B158DRAFT_2274 0.76 -0.1
439,386 + B158DRAFT_2274 0.76 -0.4
439,386 + B158DRAFT_2274 0.76 -0.0
439,386 + B158DRAFT_2274 0.76 +0.0
439,388 - B158DRAFT_2274 0.76 -0.2
439,393 - B158DRAFT_2274 0.77 -0.4
439,393 - B158DRAFT_2274 0.77 +3.3
439,393 - B158DRAFT_2274 0.77 +0.4
439,394 - B158DRAFT_2274 0.77 +2.3
439,394 - B158DRAFT_2274 0.77 -0.0
439,394 - B158DRAFT_2274 0.77 +0.2
439,456 - B158DRAFT_2274 0.85 -1.0
439,456 - B158DRAFT_2274 0.85 +0.0
439,469 + B158DRAFT_2274 0.86 -0.4
439,569 - +0.2
439,583 + +0.0
439,596 + -0.4
439,596 + +1.3
439,640 - -0.3
439,640 - +1.0
439,742 - +0.0
439,773 + +0.2
439,779 + B158DRAFT_2275 0.10 +0.1
439,787 - B158DRAFT_2275 0.11 +0.1
439,832 - B158DRAFT_2275 0.14 +0.5
439,849 + B158DRAFT_2275 0.15 +0.6
439,849 + B158DRAFT_2275 0.15 -1.0
439,881 + B158DRAFT_2275 0.18 +0.0
439,889 + B158DRAFT_2275 0.18 -0.3
439,889 + B158DRAFT_2275 0.18 -0.1
439,906 + B158DRAFT_2275 0.20 +0.3
439,914 - B158DRAFT_2275 0.20 +0.0
439,914 - B158DRAFT_2275 0.20 +0.1
439,916 - B158DRAFT_2275 0.20 +0.0
439,927 - B158DRAFT_2275 0.21 +0.6
439,937 - B158DRAFT_2275 0.22 -0.3
439,958 + B158DRAFT_2275 0.24 -0.7
439,976 + B158DRAFT_2275 0.25 +0.3
439,984 - B158DRAFT_2275 0.25 +1.0
439,984 - B158DRAFT_2275 0.25 +0.9
439,984 - B158DRAFT_2275 0.25 -0.0
440,015 + B158DRAFT_2275 0.28 +0.1
440,037 + B158DRAFT_2275 0.29 +1.3
440,091 + B158DRAFT_2275 0.33 +0.0
440,091 + B158DRAFT_2275 0.33 +0.9
440,092 + B158DRAFT_2275 0.33 +0.2
440,160 - B158DRAFT_2275 0.39 -0.1
440,164 + B158DRAFT_2275 0.39 +0.2
440,240 + B158DRAFT_2275 0.44 +0.4
440,318 - B158DRAFT_2275 0.50 +0.1
440,374 - B158DRAFT_2275 0.54 +0.4
440,381 - B158DRAFT_2275 0.55 -0.6
440,439 - B158DRAFT_2275 0.59 -0.2
440,473 + B158DRAFT_2275 0.62 -0.2
440,478 + B158DRAFT_2275 0.62 -0.2
440,481 - B158DRAFT_2275 0.62 +0.1
440,483 + B158DRAFT_2275 0.63 +0.2
440,483 + B158DRAFT_2275 0.63 +0.2
440,484 - B158DRAFT_2275 0.63 +0.4
440,484 - B158DRAFT_2275 0.63 +0.1
440,491 - B158DRAFT_2275 0.63 -0.1
440,491 - B158DRAFT_2275 0.63 -0.7
440,491 - B158DRAFT_2275 0.63 +0.4
440,491 - B158DRAFT_2275 0.63 -0.0
440,550 - B158DRAFT_2275 0.67 -0.0
440,575 - B158DRAFT_2275 0.69 +1.0
440,595 + B158DRAFT_2275 0.71 -0.6
440,595 + B158DRAFT_2275 0.71 +1.9
440,626 + B158DRAFT_2275 0.73 -0.0
440,626 + B158DRAFT_2275 0.73 -1.0
440,626 + B158DRAFT_2275 0.73 -0.5
440,628 + B158DRAFT_2275 0.73 +0.0
440,628 + B158DRAFT_2275 0.73 -0.7
440,634 - B158DRAFT_2275 0.74 +0.2
440,634 - B158DRAFT_2275 0.74 -0.3
440,663 + B158DRAFT_2275 0.76 -0.6
440,671 - B158DRAFT_2275 0.76 -0.4
440,671 - B158DRAFT_2275 0.76 -0.3
440,673 + B158DRAFT_2275 0.77 -0.6
440,682 + B158DRAFT_2275 0.77 -0.3
440,683 - B158DRAFT_2275 0.77 -0.0
440,683 - B158DRAFT_2275 0.77 -1.0
440,702 - B158DRAFT_2275 0.79 -0.2
440,707 + B158DRAFT_2275 0.79 +0.4
440,707 + B158DRAFT_2275 0.79 +0.1
440,733 - B158DRAFT_2275 0.81 -0.4
440,741 - B158DRAFT_2275 0.82 +0.6
440,830 - B158DRAFT_2275 0.88 -0.6
440,901 + +0.1
440,901 + -0.6
440,901 + +0.6
440,901 + -0.3
440,901 + +0.4
440,901 + -0.4
440,901 + +0.6
440,909 - -0.6
440,909 - +0.1
440,909 - -0.0
440,909 - -0.2
440,909 - -0.1
440,909 - -0.3
440,909 - +0.4
440,947 + -0.4
440,962 - -0.3
441,000 - +0.1
441,209 + -0.4
441,228 + -0.3
441,244 - -0.4
441,261 + -0.3
441,341 + -0.0
441,349 - +0.0
441,349 - -0.5
441,418 + -0.2
441,500 + B158DRAFT_2276 0.23 +0.3
441,508 - B158DRAFT_2276 0.24 +1.2
441,520 + B158DRAFT_2276 0.27 -0.5
441,528 - B158DRAFT_2276 0.28 -0.2
441,829 + B158DRAFT_2276 0.78 +0.3
441,854 - B158DRAFT_2276 0.82 +0.2
441,887 + B158DRAFT_2276 0.88 -0.0
441,970 - +0.8

Or see this region's nucleotide sequence