Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0521

Experiment: m.b. benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0520 and B158DRAFT_0521 are separated by 17 nucleotidesB158DRAFT_0521 and B158DRAFT_0522 are separated by 2 nucleotidesB158DRAFT_0522 and B158DRAFT_0524 are separated by 229 nucleotides B158DRAFT_0520: B158DRAFT_0520 - putative PEP-CTERM system histidine kinase, at 530,372 to 532,369 _0520 B158DRAFT_0521: B158DRAFT_0521 - PEP-CTERM-box response regulator transcription factor, at 532,387 to 533,742 _0521 B158DRAFT_0522: B158DRAFT_0522 - hypothetical protein, at 533,745 to 534,035 _0522 B158DRAFT_0524: B158DRAFT_0524 - hypothetical protein, at 534,265 to 534,753 _0524 Position (kb) 532 533 534Strain fitness (log2 ratio) -1 0 1 2at 531.399 kb on + strand, within B158DRAFT_0520at 531.399 kb on + strand, within B158DRAFT_0520at 531.409 kb on + strand, within B158DRAFT_0520at 531.412 kb on - strand, within B158DRAFT_0520at 531.412 kb on - strand, within B158DRAFT_0520at 531.613 kb on + strand, within B158DRAFT_0520at 531.619 kb on + strand, within B158DRAFT_0520at 531.622 kb on - strand, within B158DRAFT_0520at 531.639 kb on + strand, within B158DRAFT_0520at 531.639 kb on + strand, within B158DRAFT_0520at 531.639 kb on + strand, within B158DRAFT_0520at 531.639 kb on + strand, within B158DRAFT_0520at 531.639 kb on + strand, within B158DRAFT_0520at 531.639 kb on + strand, within B158DRAFT_0520at 531.639 kb on + strand, within B158DRAFT_0520at 531.647 kb on - strand, within B158DRAFT_0520at 531.647 kb on - strand, within B158DRAFT_0520at 531.647 kb on - strand, within B158DRAFT_0520at 531.647 kb on - strand, within B158DRAFT_0520at 531.647 kb on - strand, within B158DRAFT_0520at 531.647 kb on - strand, within B158DRAFT_0520at 531.647 kb on - strand, within B158DRAFT_0520at 531.647 kb on - strand, within B158DRAFT_0520at 531.649 kb on + strand, within B158DRAFT_0520at 531.649 kb on + strand, within B158DRAFT_0520at 531.649 kb on + strand, within B158DRAFT_0520at 531.649 kb on + strand, within B158DRAFT_0520at 531.649 kb on + strand, within B158DRAFT_0520at 531.649 kb on + strand, within B158DRAFT_0520at 531.649 kb on + strand, within B158DRAFT_0520at 531.657 kb on - strand, within B158DRAFT_0520at 531.657 kb on - strand, within B158DRAFT_0520at 531.657 kb on - strand, within B158DRAFT_0520at 531.657 kb on - strand, within B158DRAFT_0520at 531.657 kb on - strand, within B158DRAFT_0520at 531.657 kb on - strand, within B158DRAFT_0520at 531.717 kb on + strand, within B158DRAFT_0520at 531.725 kb on - strand, within B158DRAFT_0520at 531.725 kb on - strand, within B158DRAFT_0520at 531.845 kb on + strand, within B158DRAFT_0520at 531.870 kb on + strand, within B158DRAFT_0520at 531.970 kb on + strand, within B158DRAFT_0520at 531.998 kb on - strand, within B158DRAFT_0520at 531.998 kb on - strand, within B158DRAFT_0520at 531.998 kb on - strand, within B158DRAFT_0520at 531.998 kb on - strand, within B158DRAFT_0520at 531.998 kb on - strand, within B158DRAFT_0520at 532.025 kb on - strand, within B158DRAFT_0520at 532.032 kb on - strand, within B158DRAFT_0520at 532.032 kb on - strand, within B158DRAFT_0520at 532.127 kb on - strand, within B158DRAFT_0520at 532.134 kb on + strand, within B158DRAFT_0520at 532.142 kb on - strand, within B158DRAFT_0520at 532.147 kb on - strand, within B158DRAFT_0520at 532.152 kb on - strand, within B158DRAFT_0520at 532.165 kb on + strand, within B158DRAFT_0520at 532.165 kb on + strand, within B158DRAFT_0520at 532.165 kb on + strand, within B158DRAFT_0520at 532.165 kb on + strand, within B158DRAFT_0520at 532.165 kb on + strand, within B158DRAFT_0520at 532.165 kb on + strand, within B158DRAFT_0520at 532.165 kb on + strand, within B158DRAFT_0520at 532.172 kb on + strandat 532.173 kb on - strandat 532.173 kb on - strandat 532.173 kb on - strandat 532.222 kb on + strandat 532.236 kb on - strandat 532.323 kb on - strandat 532.350 kb on + strandat 532.350 kb on + strandat 532.350 kb on + strandat 532.358 kb on - strandat 532.358 kb on - strandat 532.380 kb on + strandat 532.388 kb on - strandat 532.393 kb on - strandat 532.530 kb on + strand, within B158DRAFT_0521at 532.536 kb on + strand, within B158DRAFT_0521at 532.536 kb on + strand, within B158DRAFT_0521at 532.536 kb on + strand, within B158DRAFT_0521at 532.544 kb on + strand, within B158DRAFT_0521at 532.544 kb on + strand, within B158DRAFT_0521at 532.544 kb on + strand, within B158DRAFT_0521at 532.544 kb on - strand, within B158DRAFT_0521at 532.544 kb on - strand, within B158DRAFT_0521at 532.544 kb on - strand, within B158DRAFT_0521at 532.546 kb on - strand, within B158DRAFT_0521at 532.552 kb on - strand, within B158DRAFT_0521at 532.552 kb on - strand, within B158DRAFT_0521at 532.563 kb on + strand, within B158DRAFT_0521at 532.570 kb on - strand, within B158DRAFT_0521at 532.622 kb on - strand, within B158DRAFT_0521at 532.652 kb on + strand, within B158DRAFT_0521at 532.652 kb on + strand, within B158DRAFT_0521at 532.652 kb on + strand, within B158DRAFT_0521at 532.652 kb on + strand, within B158DRAFT_0521at 532.652 kb on + strand, within B158DRAFT_0521at 532.652 kb on + strand, within B158DRAFT_0521at 532.652 kb on + strand, within B158DRAFT_0521at 532.660 kb on - strand, within B158DRAFT_0521at 532.660 kb on - strand, within B158DRAFT_0521at 532.660 kb on - strand, within B158DRAFT_0521at 532.660 kb on - strand, within B158DRAFT_0521at 532.660 kb on - strand, within B158DRAFT_0521at 532.660 kb on - strand, within B158DRAFT_0521at 532.841 kb on + strand, within B158DRAFT_0521at 532.841 kb on + strand, within B158DRAFT_0521at 533.020 kb on - strand, within B158DRAFT_0521at 533.020 kb on - strand, within B158DRAFT_0521at 533.020 kb on - strand, within B158DRAFT_0521at 533.030 kb on - strand, within B158DRAFT_0521at 533.043 kb on - strand, within B158DRAFT_0521at 533.108 kb on + strand, within B158DRAFT_0521at 533.121 kb on - strand, within B158DRAFT_0521at 533.149 kb on + strand, within B158DRAFT_0521at 533.165 kb on - strand, within B158DRAFT_0521at 533.200 kb on - strand, within B158DRAFT_0521at 533.215 kb on - strand, within B158DRAFT_0521at 533.215 kb on - strand, within B158DRAFT_0521at 533.458 kb on + strand, within B158DRAFT_0521at 533.458 kb on + strand, within B158DRAFT_0521at 533.466 kb on - strand, within B158DRAFT_0521at 533.520 kb on - strand, within B158DRAFT_0521at 533.566 kb on + strand, within B158DRAFT_0521at 533.672 kb on + strandat 533.686 kb on + strandat 533.694 kb on - strandat 533.701 kb on + strandat 533.701 kb on + strandat 533.709 kb on - strandat 533.709 kb on - strandat 533.711 kb on + strandat 533.727 kb on - strandat 533.738 kb on + strandat 533.783 kb on + strand, within B158DRAFT_0522at 533.793 kb on + strand, within B158DRAFT_0522at 533.836 kb on + strand, within B158DRAFT_0522at 533.844 kb on - strand, within B158DRAFT_0522at 533.888 kb on + strand, within B158DRAFT_0522at 533.945 kb on - strand, within B158DRAFT_0522at 534.024 kb on - strandat 534.044 kb on + strandat 534.044 kb on + strandat 534.052 kb on - strandat 534.065 kb on + strandat 534.073 kb on - strandat 534.115 kb on - strandat 534.295 kb on + strandat 534.295 kb on + strandat 534.295 kb on - strandat 534.297 kb on + strandat 534.305 kb on - strandat 534.305 kb on - strandat 534.305 kb on - strandat 534.305 kb on - strandat 534.305 kb on - strandat 534.479 kb on + strand, within B158DRAFT_0524at 534.479 kb on + strand, within B158DRAFT_0524at 534.487 kb on - strand, within B158DRAFT_0524at 534.489 kb on - strand, within B158DRAFT_0524at 534.494 kb on + strand, within B158DRAFT_0524at 534.551 kb on + strand, within B158DRAFT_0524at 534.659 kb on - strand, within B158DRAFT_0524at 534.718 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.2 mg/ml
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531,399 + B158DRAFT_0520 0.51 +0.3
531,399 + B158DRAFT_0520 0.51 +0.2
531,409 + B158DRAFT_0520 0.52 +0.1
531,412 - B158DRAFT_0520 0.52 +0.3
531,412 - B158DRAFT_0520 0.52 +0.5
531,613 + B158DRAFT_0520 0.62 -0.0
531,619 + B158DRAFT_0520 0.62 +0.4
531,622 - B158DRAFT_0520 0.63 +0.2
531,639 + B158DRAFT_0520 0.63 +0.7
531,639 + B158DRAFT_0520 0.63 +0.7
531,639 + B158DRAFT_0520 0.63 -0.3
531,639 + B158DRAFT_0520 0.63 +0.4
531,639 + B158DRAFT_0520 0.63 -0.0
531,639 + B158DRAFT_0520 0.63 +0.7
531,639 + B158DRAFT_0520 0.63 +1.1
531,647 - B158DRAFT_0520 0.64 +0.3
531,647 - B158DRAFT_0520 0.64 +0.4
531,647 - B158DRAFT_0520 0.64 +0.9
531,647 - B158DRAFT_0520 0.64 +0.9
531,647 - B158DRAFT_0520 0.64 +1.8
531,647 - B158DRAFT_0520 0.64 +2.1
531,647 - B158DRAFT_0520 0.64 +0.2
531,647 - B158DRAFT_0520 0.64 -0.1
531,649 + B158DRAFT_0520 0.64 +0.4
531,649 + B158DRAFT_0520 0.64 +0.4
531,649 + B158DRAFT_0520 0.64 +0.7
531,649 + B158DRAFT_0520 0.64 +0.5
531,649 + B158DRAFT_0520 0.64 +0.8
531,649 + B158DRAFT_0520 0.64 +0.7
531,649 + B158DRAFT_0520 0.64 +0.5
531,657 - B158DRAFT_0520 0.64 +1.0
531,657 - B158DRAFT_0520 0.64 +0.3
531,657 - B158DRAFT_0520 0.64 +0.5
531,657 - B158DRAFT_0520 0.64 +0.3
531,657 - B158DRAFT_0520 0.64 +0.6
531,657 - B158DRAFT_0520 0.64 -0.1
531,717 + B158DRAFT_0520 0.67 +0.2
531,725 - B158DRAFT_0520 0.68 +0.1
531,725 - B158DRAFT_0520 0.68 +0.8
531,845 + B158DRAFT_0520 0.74 +0.1
531,870 + B158DRAFT_0520 0.75 -0.9
531,970 + B158DRAFT_0520 0.80 +0.4
531,998 - B158DRAFT_0520 0.81 -0.2
531,998 - B158DRAFT_0520 0.81 +0.5
531,998 - B158DRAFT_0520 0.81 +0.9
531,998 - B158DRAFT_0520 0.81 -0.4
531,998 - B158DRAFT_0520 0.81 +0.2
532,025 - B158DRAFT_0520 0.83 +0.5
532,032 - B158DRAFT_0520 0.83 +1.1
532,032 - B158DRAFT_0520 0.83 +0.2
532,127 - B158DRAFT_0520 0.88 +0.2
532,134 + B158DRAFT_0520 0.88 +0.6
532,142 - B158DRAFT_0520 0.89 +0.7
532,147 - B158DRAFT_0520 0.89 -0.6
532,152 - B158DRAFT_0520 0.89 +0.2
532,165 + B158DRAFT_0520 0.90 +0.4
532,165 + B158DRAFT_0520 0.90 +0.8
532,165 + B158DRAFT_0520 0.90 -0.2
532,165 + B158DRAFT_0520 0.90 +0.5
532,165 + B158DRAFT_0520 0.90 +0.3
532,165 + B158DRAFT_0520 0.90 -0.6
532,165 + B158DRAFT_0520 0.90 -0.1
532,172 + -0.2
532,173 - +0.4
532,173 - +0.4
532,173 - +0.4
532,222 + -0.3
532,236 - +0.0
532,323 - +0.2
532,350 + +0.9
532,350 + +0.4
532,350 + +0.1
532,358 - -0.2
532,358 - +1.7
532,380 + +0.4
532,388 - -0.7
532,393 - +1.2
532,530 + B158DRAFT_0521 0.11 +0.6
532,536 + B158DRAFT_0521 0.11 +0.8
532,536 + B158DRAFT_0521 0.11 +0.3
532,536 + B158DRAFT_0521 0.11 +0.5
532,544 + B158DRAFT_0521 0.12 +0.6
532,544 + B158DRAFT_0521 0.12 +0.0
532,544 + B158DRAFT_0521 0.12 +0.3
532,544 - B158DRAFT_0521 0.12 -0.2
532,544 - B158DRAFT_0521 0.12 +0.2
532,544 - B158DRAFT_0521 0.12 +0.7
532,546 - B158DRAFT_0521 0.12 +0.4
532,552 - B158DRAFT_0521 0.12 +0.5
532,552 - B158DRAFT_0521 0.12 +0.2
532,563 + B158DRAFT_0521 0.13 -0.0
532,570 - B158DRAFT_0521 0.13 +0.9
532,622 - B158DRAFT_0521 0.17 +0.6
532,652 + B158DRAFT_0521 0.20 +0.3
532,652 + B158DRAFT_0521 0.20 -0.1
532,652 + B158DRAFT_0521 0.20 +0.1
532,652 + B158DRAFT_0521 0.20 +0.2
532,652 + B158DRAFT_0521 0.20 -0.0
532,652 + B158DRAFT_0521 0.20 +1.0
532,652 + B158DRAFT_0521 0.20 +0.4
532,660 - B158DRAFT_0521 0.20 +0.7
532,660 - B158DRAFT_0521 0.20 +0.6
532,660 - B158DRAFT_0521 0.20 +0.2
532,660 - B158DRAFT_0521 0.20 -0.3
532,660 - B158DRAFT_0521 0.20 +0.6
532,660 - B158DRAFT_0521 0.20 -0.1
532,841 + B158DRAFT_0521 0.33 +0.4
532,841 + B158DRAFT_0521 0.33 +0.2
533,020 - B158DRAFT_0521 0.47 +0.4
533,020 - B158DRAFT_0521 0.47 +1.1
533,020 - B158DRAFT_0521 0.47 +1.1
533,030 - B158DRAFT_0521 0.47 +0.3
533,043 - B158DRAFT_0521 0.48 +0.3
533,108 + B158DRAFT_0521 0.53 -0.3
533,121 - B158DRAFT_0521 0.54 -0.0
533,149 + B158DRAFT_0521 0.56 -0.0
533,165 - B158DRAFT_0521 0.57 +1.2
533,200 - B158DRAFT_0521 0.60 +0.3
533,215 - B158DRAFT_0521 0.61 +0.4
533,215 - B158DRAFT_0521 0.61 -0.3
533,458 + B158DRAFT_0521 0.79 +0.3
533,458 + B158DRAFT_0521 0.79 +0.2
533,466 - B158DRAFT_0521 0.80 -0.6
533,520 - B158DRAFT_0521 0.84 +0.4
533,566 + B158DRAFT_0521 0.87 +1.2
533,672 + +0.6
533,686 + -0.8
533,694 - -0.1
533,701 + +1.2
533,701 + +0.6
533,709 - +0.2
533,709 - +0.6
533,711 + +0.4
533,727 - +0.1
533,738 + +0.1
533,783 + B158DRAFT_0522 0.13 -0.0
533,793 + B158DRAFT_0522 0.16 +0.2
533,836 + B158DRAFT_0522 0.31 -0.2
533,844 - B158DRAFT_0522 0.34 -0.2
533,888 + B158DRAFT_0522 0.49 -0.6
533,945 - B158DRAFT_0522 0.69 -0.6
534,024 - -0.5
534,044 + -0.3
534,044 + -0.4
534,052 - -0.3
534,065 + +0.3
534,073 - -0.1
534,115 - +0.4
534,295 + -0.1
534,295 + +0.1
534,295 - -0.7
534,297 + -0.2
534,305 - -0.5
534,305 - +0.3
534,305 - -0.3
534,305 - -0.3
534,305 - -0.4
534,479 + B158DRAFT_0524 0.44 +0.1
534,479 + B158DRAFT_0524 0.44 -0.0
534,487 - B158DRAFT_0524 0.45 -0.1
534,489 - B158DRAFT_0524 0.46 +0.1
534,494 + B158DRAFT_0524 0.47 +0.2
534,551 + B158DRAFT_0524 0.58 +0.5
534,659 - B158DRAFT_0524 0.81 -0.1
534,718 + -0.6

Or see this region's nucleotide sequence