Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0058

Experiment: m.b. benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0056 and B158DRAFT_0057 are separated by 59 nucleotidesB158DRAFT_0057 and B158DRAFT_0058 are separated by 51 nucleotidesB158DRAFT_0058 and B158DRAFT_0059 are separated by 11 nucleotidesB158DRAFT_0059 and B158DRAFT_0060 are separated by 39 nucleotides B158DRAFT_0056: B158DRAFT_0056 - transcriptional regulator, TraR/DksA family, at 54,025 to 54,471 _0056 B158DRAFT_0057: B158DRAFT_0057 - glutamyl-queuosine tRNA(Asp) synthetase, at 54,531 to 55,406 _0057 B158DRAFT_0058: B158DRAFT_0058 - poly(A) polymerase, at 55,458 to 56,828 _0058 B158DRAFT_0059: B158DRAFT_0059 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 56,840 to 57,373 _0059 B158DRAFT_0060: B158DRAFT_0060 - Deoxynucleoside kinases, at 57,413 to 58,066 _0060 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 54.459 kb on + strandat 54.482 kb on - strandat 54.487 kb on - strandat 54.491 kb on + strandat 54.494 kb on - strandat 54.494 kb on - strandat 54.519 kb on - strandat 54.591 kb on + strandat 54.594 kb on + strandat 54.717 kb on + strand, within B158DRAFT_0057at 54.725 kb on - strand, within B158DRAFT_0057at 54.733 kb on + strand, within B158DRAFT_0057at 54.741 kb on - strand, within B158DRAFT_0057at 54.759 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.814 kb on + strand, within B158DRAFT_0057at 54.814 kb on - strand, within B158DRAFT_0057at 54.938 kb on + strand, within B158DRAFT_0057at 54.939 kb on - strand, within B158DRAFT_0057at 55.058 kb on + strand, within B158DRAFT_0057at 55.063 kb on + strand, within B158DRAFT_0057at 55.063 kb on + strand, within B158DRAFT_0057at 55.063 kb on + strand, within B158DRAFT_0057at 55.071 kb on - strand, within B158DRAFT_0057at 55.073 kb on + strand, within B158DRAFT_0057at 55.073 kb on + strand, within B158DRAFT_0057at 55.081 kb on - strand, within B158DRAFT_0057at 55.083 kb on - strand, within B158DRAFT_0057at 55.096 kb on + strand, within B158DRAFT_0057at 55.109 kb on + strand, within B158DRAFT_0057at 55.109 kb on + strand, within B158DRAFT_0057at 55.111 kb on + strand, within B158DRAFT_0057at 55.111 kb on + strand, within B158DRAFT_0057at 55.119 kb on - strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.158 kb on + strand, within B158DRAFT_0057at 55.166 kb on - strand, within B158DRAFT_0057at 55.176 kb on - strand, within B158DRAFT_0057at 55.231 kb on - strand, within B158DRAFT_0057at 55.245 kb on - strand, within B158DRAFT_0057at 55.257 kb on + strand, within B158DRAFT_0057at 55.360 kb on + strandat 55.370 kb on + strandat 55.432 kb on + strandat 55.640 kb on + strand, within B158DRAFT_0058at 55.645 kb on + strand, within B158DRAFT_0058at 55.645 kb on + strand, within B158DRAFT_0058at 55.847 kb on + strand, within B158DRAFT_0058at 56.132 kb on + strand, within B158DRAFT_0058at 56.150 kb on + strand, within B158DRAFT_0058at 56.233 kb on + strand, within B158DRAFT_0058at 56.313 kb on + strand, within B158DRAFT_0058at 56.395 kb on + strand, within B158DRAFT_0058at 56.426 kb on + strand, within B158DRAFT_0058at 56.530 kb on + strand, within B158DRAFT_0058at 56.570 kb on + strand, within B158DRAFT_0058at 56.597 kb on + strand, within B158DRAFT_0058at 56.728 kb on + strandat 56.791 kb on + strandat 57.368 kb on + strandat 57.417 kb on + strandat 57.417 kb on + strandat 57.417 kb on + strandat 57.426 kb on + strandat 57.460 kb on - strandat 57.472 kb on + strandat 57.480 kb on - strand, within B158DRAFT_0060at 57.480 kb on - strand, within B158DRAFT_0060at 57.506 kb on + strand, within B158DRAFT_0060at 57.508 kb on + strand, within B158DRAFT_0060at 57.514 kb on - strand, within B158DRAFT_0060at 57.516 kb on - strand, within B158DRAFT_0060at 57.521 kb on - strand, within B158DRAFT_0060at 57.658 kb on + strand, within B158DRAFT_0060at 57.658 kb on + strand, within B158DRAFT_0060at 57.658 kb on + strand, within B158DRAFT_0060at 57.666 kb on - strand, within B158DRAFT_0060at 57.667 kb on + strand, within B158DRAFT_0060at 57.735 kb on + strand, within B158DRAFT_0060at 57.771 kb on + strand, within B158DRAFT_0060at 57.779 kb on - strand, within B158DRAFT_0060at 57.781 kb on + strand, within B158DRAFT_0060at 57.781 kb on + strand, within B158DRAFT_0060at 57.786 kb on + strand, within B158DRAFT_0060

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.2 mg/ml
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54,459 + +0.1
54,482 - -0.4
54,487 - -0.1
54,491 + -0.1
54,494 - +0.2
54,494 - -0.1
54,519 - +2.0
54,591 + -0.4
54,594 + -0.5
54,717 + B158DRAFT_0057 0.21 -0.2
54,725 - B158DRAFT_0057 0.22 -0.0
54,733 + B158DRAFT_0057 0.23 -0.1
54,741 - B158DRAFT_0057 0.24 -0.3
54,759 + B158DRAFT_0057 0.26 +0.1
54,769 + B158DRAFT_0057 0.27 -0.3
54,769 + B158DRAFT_0057 0.27 -0.5
54,769 + B158DRAFT_0057 0.27 -0.3
54,769 + B158DRAFT_0057 0.27 -0.1
54,777 - B158DRAFT_0057 0.28 -0.1
54,777 - B158DRAFT_0057 0.28 +0.2
54,777 - B158DRAFT_0057 0.28 -0.3
54,777 - B158DRAFT_0057 0.28 -0.5
54,814 + B158DRAFT_0057 0.32 -0.2
54,814 - B158DRAFT_0057 0.32 +0.1
54,938 + B158DRAFT_0057 0.46 +0.5
54,939 - B158DRAFT_0057 0.47 -0.1
55,058 + B158DRAFT_0057 0.60 -0.1
55,063 + B158DRAFT_0057 0.61 -0.6
55,063 + B158DRAFT_0057 0.61 +1.1
55,063 + B158DRAFT_0057 0.61 +0.5
55,071 - B158DRAFT_0057 0.62 -0.4
55,073 + B158DRAFT_0057 0.62 +1.1
55,073 + B158DRAFT_0057 0.62 -0.2
55,081 - B158DRAFT_0057 0.63 -0.5
55,083 - B158DRAFT_0057 0.63 +0.6
55,096 + B158DRAFT_0057 0.64 -0.4
55,109 + B158DRAFT_0057 0.66 -0.0
55,109 + B158DRAFT_0057 0.66 +0.2
55,111 + B158DRAFT_0057 0.66 +1.0
55,111 + B158DRAFT_0057 0.66 -0.1
55,119 - B158DRAFT_0057 0.67 +0.2
55,143 + B158DRAFT_0057 0.70 -0.3
55,143 + B158DRAFT_0057 0.70 +0.9
55,143 + B158DRAFT_0057 0.70 -0.2
55,143 + B158DRAFT_0057 0.70 +0.7
55,143 + B158DRAFT_0057 0.70 +0.6
55,143 + B158DRAFT_0057 0.70 -0.1
55,151 - B158DRAFT_0057 0.71 -0.0
55,151 - B158DRAFT_0057 0.71 +0.5
55,151 - B158DRAFT_0057 0.71 +0.1
55,151 - B158DRAFT_0057 0.71 +0.4
55,151 - B158DRAFT_0057 0.71 +0.7
55,151 - B158DRAFT_0057 0.71 -0.8
55,158 + B158DRAFT_0057 0.72 +0.2
55,166 - B158DRAFT_0057 0.72 -0.2
55,176 - B158DRAFT_0057 0.74 +0.1
55,231 - B158DRAFT_0057 0.80 -0.8
55,245 - B158DRAFT_0057 0.82 +0.4
55,257 + B158DRAFT_0057 0.83 -0.4
55,360 + +0.1
55,370 + -0.1
55,432 + -0.1
55,640 + B158DRAFT_0058 0.13 +0.3
55,645 + B158DRAFT_0058 0.14 +0.6
55,645 + B158DRAFT_0058 0.14 -0.7
55,847 + B158DRAFT_0058 0.28 -0.2
56,132 + B158DRAFT_0058 0.49 -0.0
56,150 + B158DRAFT_0058 0.50 +0.1
56,233 + B158DRAFT_0058 0.57 +0.2
56,313 + B158DRAFT_0058 0.62 -0.2
56,395 + B158DRAFT_0058 0.68 -0.7
56,426 + B158DRAFT_0058 0.71 +0.6
56,530 + B158DRAFT_0058 0.78 -0.4
56,570 + B158DRAFT_0058 0.81 -0.2
56,597 + B158DRAFT_0058 0.83 -0.3
56,728 + +0.3
56,791 + -0.4
57,368 + -0.2
57,417 + +0.5
57,417 + +0.1
57,417 + -0.1
57,426 + +0.3
57,460 - -0.6
57,472 + +0.3
57,480 - B158DRAFT_0060 0.10 -1.8
57,480 - B158DRAFT_0060 0.10 -2.2
57,506 + B158DRAFT_0060 0.14 +0.1
57,508 + B158DRAFT_0060 0.15 +1.6
57,514 - B158DRAFT_0060 0.15 -0.2
57,516 - B158DRAFT_0060 0.16 -1.1
57,521 - B158DRAFT_0060 0.17 +0.1
57,658 + B158DRAFT_0060 0.37 -0.2
57,658 + B158DRAFT_0060 0.37 -0.6
57,658 + B158DRAFT_0060 0.37 -1.0
57,666 - B158DRAFT_0060 0.39 -2.6
57,667 + B158DRAFT_0060 0.39 -0.8
57,735 + B158DRAFT_0060 0.49 +0.3
57,771 + B158DRAFT_0060 0.55 -0.1
57,779 - B158DRAFT_0060 0.56 -1.4
57,781 + B158DRAFT_0060 0.56 -0.3
57,781 + B158DRAFT_0060 0.56 -0.7
57,786 + B158DRAFT_0060 0.57 +0.4

Or see this region's nucleotide sequence