Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2104 and B158DRAFT_2105 are separated by 87 nucleotides B158DRAFT_2105 and B158DRAFT_2106 are separated by 2 nucleotides B158DRAFT_2106 and B158DRAFT_2107 are separated by 31 nucleotides B158DRAFT_2107 and B158DRAFT_2108 are separated by 45 nucleotides
B158DRAFT_2104: B158DRAFT_2104 - Stringent starvation protein B, at 238,328 to 238,780
_2104
B158DRAFT_2105: B158DRAFT_2105 - Predicted periplasmic or secreted lipoprotein, at 238,868 to 239,395
_2105
B158DRAFT_2106: B158DRAFT_2106 - Phosphoheptose isomerase, at 239,398 to 239,985
_2106
B158DRAFT_2107: B158DRAFT_2107 - TIGR00252 family protein, at 240,017 to 240,385
_2107
B158DRAFT_2108: B158DRAFT_2108 - Putative lipoprotein, at 240,431 to 242,269
_2108
Position (kb) 239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 238.401 kb on - strand, within B158DRAFT_2104 at 238.403 kb on + strand, within B158DRAFT_2104 at 238.403 kb on + strand, within B158DRAFT_2104 at 238.403 kb on + strand, within B158DRAFT_2104 at 238.403 kb on + strand, within B158DRAFT_2104 at 238.403 kb on + strand, within B158DRAFT_2104 at 238.403 kb on + strand, within B158DRAFT_2104 at 238.411 kb on - strand, within B158DRAFT_2104 at 238.411 kb on - strand, within B158DRAFT_2104 at 238.411 kb on - strand, within B158DRAFT_2104 at 238.411 kb on - strand, within B158DRAFT_2104 at 238.411 kb on - strand, within B158DRAFT_2104 at 238.582 kb on - strand, within B158DRAFT_2104 at 238.830 kb on + strand at 238.830 kb on + strand at 238.830 kb on + strand at 238.838 kb on - strand at 238.930 kb on + strand, within B158DRAFT_2105 at 238.943 kb on - strand, within B158DRAFT_2105 at 238.943 kb on - strand, within B158DRAFT_2105 at 238.943 kb on - strand, within B158DRAFT_2105 at 239.079 kb on + strand, within B158DRAFT_2105 at 239.087 kb on - strand, within B158DRAFT_2105 at 239.087 kb on - strand, within B158DRAFT_2105 at 239.150 kb on - strand, within B158DRAFT_2105 at 239.293 kb on - strand, within B158DRAFT_2105 at 239.300 kb on + strand, within B158DRAFT_2105 at 239.300 kb on + strand, within B158DRAFT_2105 at 239.414 kb on + strand at 239.524 kb on + strand, within B158DRAFT_2106 at 239.672 kb on - strand, within B158DRAFT_2106 at 239.673 kb on - strand, within B158DRAFT_2106 at 239.705 kb on + strand, within B158DRAFT_2106 at 239.993 kb on - strand at 240.151 kb on - strand, within B158DRAFT_2107 at 240.294 kb on + strand, within B158DRAFT_2107 at 240.294 kb on + strand, within B158DRAFT_2107 at 240.294 kb on + strand, within B158DRAFT_2107 at 240.302 kb on - strand, within B158DRAFT_2107 at 240.350 kb on + strand at 240.358 kb on - strand at 240.360 kb on - strand at 240.366 kb on - strand at 240.373 kb on + strand at 240.373 kb on + strand at 240.381 kb on - strand at 240.381 kb on - strand at 240.381 kb on - strand at 240.430 kb on + strand at 240.443 kb on - strand at 240.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 238,401 - B158DRAFT_2104 0.16 -0.3 238,403 + B158DRAFT_2104 0.17 +1.4 238,403 + B158DRAFT_2104 0.17 -0.1 238,403 + B158DRAFT_2104 0.17 +0.3 238,403 + B158DRAFT_2104 0.17 -0.1 238,403 + B158DRAFT_2104 0.17 -0.5 238,403 + B158DRAFT_2104 0.17 +0.3 238,411 - B158DRAFT_2104 0.18 -0.0 238,411 - B158DRAFT_2104 0.18 +0.3 238,411 - B158DRAFT_2104 0.18 -0.6 238,411 - B158DRAFT_2104 0.18 -0.1 238,411 - B158DRAFT_2104 0.18 -0.7 238,582 - B158DRAFT_2104 0.56 +0.5 238,830 + -0.5 238,830 + -0.4 238,830 + +0.1 238,838 - -0.4 238,930 + B158DRAFT_2105 0.12 -0.2 238,943 - B158DRAFT_2105 0.14 -0.2 238,943 - B158DRAFT_2105 0.14 -0.3 238,943 - B158DRAFT_2105 0.14 -1.0 239,079 + B158DRAFT_2105 0.40 -0.1 239,087 - B158DRAFT_2105 0.41 -0.0 239,087 - B158DRAFT_2105 0.41 -0.1 239,150 - B158DRAFT_2105 0.53 -0.9 239,293 - B158DRAFT_2105 0.80 -1.1 239,300 + B158DRAFT_2105 0.82 -0.5 239,300 + B158DRAFT_2105 0.82 +0.7 239,414 + -2.2 239,524 + B158DRAFT_2106 0.21 -3.3 239,672 - B158DRAFT_2106 0.47 -2.3 239,673 - B158DRAFT_2106 0.47 -1.4 239,705 + B158DRAFT_2106 0.52 -2.6 239,993 - -1.8 240,151 - B158DRAFT_2107 0.36 -1.2 240,294 + B158DRAFT_2107 0.75 -1.2 240,294 + B158DRAFT_2107 0.75 -0.9 240,294 + B158DRAFT_2107 0.75 -0.0 240,302 - B158DRAFT_2107 0.77 -0.2 240,350 + -0.1 240,358 - -0.7 240,360 - -0.5 240,366 - -0.3 240,373 + -0.6 240,373 + -0.4 240,381 - -1.2 240,381 - -2.2 240,381 - -0.4 240,430 + -0.4 240,443 - -1.3 240,443 - -1.4
Or see this region's nucleotide sequence