Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2079

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2077 and B158DRAFT_2078 overlap by 4 nucleotidesB158DRAFT_2078 and B158DRAFT_2079 are separated by 4 nucleotidesB158DRAFT_2079 and B158DRAFT_2080 are separated by 26 nucleotides B158DRAFT_2077: B158DRAFT_2077 - Predicted P-loop-containing kinase, at 217,415 to 218,266 _2077 B158DRAFT_2078: B158DRAFT_2078 - PTS IIA-like nitrogen-regulatory protein PtsN, at 218,263 to 218,811 _2078 B158DRAFT_2079: B158DRAFT_2079 - ribosomal subunit interface protein, at 218,816 to 219,103 _2079 B158DRAFT_2080: B158DRAFT_2080 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 219,130 to 220,602 _2080 Position (kb) 218 219 220Strain fitness (log2 ratio) -3 -2 -1 0 1at 217.852 kb on + strand, within B158DRAFT_2077at 217.852 kb on + strand, within B158DRAFT_2077at 217.852 kb on + strand, within B158DRAFT_2077at 217.852 kb on + strand, within B158DRAFT_2077at 217.860 kb on - strand, within B158DRAFT_2077at 217.860 kb on - strand, within B158DRAFT_2077at 217.868 kb on + strand, within B158DRAFT_2077at 217.868 kb on - strand, within B158DRAFT_2077at 217.878 kb on + strand, within B158DRAFT_2077at 218.022 kb on + strand, within B158DRAFT_2077at 218.022 kb on + strand, within B158DRAFT_2077at 218.022 kb on + strand, within B158DRAFT_2077at 218.030 kb on - strand, within B158DRAFT_2077at 218.030 kb on - strand, within B158DRAFT_2077at 218.030 kb on - strand, within B158DRAFT_2077at 218.098 kb on + strand, within B158DRAFT_2077at 218.113 kb on - strand, within B158DRAFT_2077at 218.131 kb on + strand, within B158DRAFT_2077at 218.131 kb on + strand, within B158DRAFT_2077at 218.139 kb on - strand, within B158DRAFT_2077at 218.228 kb on + strandat 218.236 kb on - strandat 218.330 kb on - strand, within B158DRAFT_2078at 218.340 kb on - strand, within B158DRAFT_2078at 218.346 kb on - strand, within B158DRAFT_2078at 218.347 kb on - strand, within B158DRAFT_2078at 218.388 kb on + strand, within B158DRAFT_2078at 218.406 kb on - strand, within B158DRAFT_2078at 218.473 kb on - strand, within B158DRAFT_2078at 218.475 kb on + strand, within B158DRAFT_2078at 218.518 kb on + strand, within B158DRAFT_2078at 218.518 kb on + strand, within B158DRAFT_2078at 218.532 kb on + strand, within B158DRAFT_2078at 218.532 kb on + strand, within B158DRAFT_2078at 218.532 kb on + strand, within B158DRAFT_2078at 218.573 kb on - strand, within B158DRAFT_2078at 218.584 kb on + strand, within B158DRAFT_2078at 218.586 kb on + strand, within B158DRAFT_2078at 218.589 kb on + strand, within B158DRAFT_2078at 218.589 kb on + strand, within B158DRAFT_2078at 218.604 kb on - strand, within B158DRAFT_2078at 218.604 kb on - strand, within B158DRAFT_2078at 218.619 kb on - strand, within B158DRAFT_2078at 218.653 kb on - strand, within B158DRAFT_2078at 218.789 kb on - strandat 218.814 kb on + strandat 218.814 kb on + strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.891 kb on + strand, within B158DRAFT_2079at 218.938 kb on + strand, within B158DRAFT_2079at 219.103 kb on - strandat 219.154 kb on - strandat 219.264 kb on - strandat 219.264 kb on - strandat 219.292 kb on - strand, within B158DRAFT_2080at 219.587 kb on - strand, within B158DRAFT_2080at 219.587 kb on - strand, within B158DRAFT_2080at 219.587 kb on - strand, within B158DRAFT_2080at 219.605 kb on - strand, within B158DRAFT_2080at 219.640 kb on - strand, within B158DRAFT_2080at 219.689 kb on + strand, within B158DRAFT_2080at 219.697 kb on - strand, within B158DRAFT_2080at 219.697 kb on - strand, within B158DRAFT_2080at 219.739 kb on - strand, within B158DRAFT_2080at 219.795 kb on - strand, within B158DRAFT_2080at 219.797 kb on + strand, within B158DRAFT_2080

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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217,852 + B158DRAFT_2077 0.51 -1.9
217,852 + B158DRAFT_2077 0.51 -1.3
217,852 + B158DRAFT_2077 0.51 -0.9
217,852 + B158DRAFT_2077 0.51 -2.2
217,860 - B158DRAFT_2077 0.52 -1.6
217,860 - B158DRAFT_2077 0.52 -0.6
217,868 + B158DRAFT_2077 0.53 -1.4
217,868 - B158DRAFT_2077 0.53 +0.1
217,878 + B158DRAFT_2077 0.54 -2.5
218,022 + B158DRAFT_2077 0.71 -0.9
218,022 + B158DRAFT_2077 0.71 -0.7
218,022 + B158DRAFT_2077 0.71 -1.1
218,030 - B158DRAFT_2077 0.72 -2.1
218,030 - B158DRAFT_2077 0.72 -1.6
218,030 - B158DRAFT_2077 0.72 -3.5
218,098 + B158DRAFT_2077 0.80 -2.3
218,113 - B158DRAFT_2077 0.82 -2.5
218,131 + B158DRAFT_2077 0.84 -2.4
218,131 + B158DRAFT_2077 0.84 -0.7
218,139 - B158DRAFT_2077 0.85 -2.9
218,228 + +1.1
218,236 - -1.8
218,330 - B158DRAFT_2078 0.12 -0.5
218,340 - B158DRAFT_2078 0.14 +0.2
218,346 - B158DRAFT_2078 0.15 -0.7
218,347 - B158DRAFT_2078 0.15 -0.5
218,388 + B158DRAFT_2078 0.23 -1.5
218,406 - B158DRAFT_2078 0.26 +0.3
218,473 - B158DRAFT_2078 0.38 -0.2
218,475 + B158DRAFT_2078 0.39 -0.8
218,518 + B158DRAFT_2078 0.46 -0.6
218,518 + B158DRAFT_2078 0.46 -0.6
218,532 + B158DRAFT_2078 0.49 -0.4
218,532 + B158DRAFT_2078 0.49 -1.0
218,532 + B158DRAFT_2078 0.49 -0.3
218,573 - B158DRAFT_2078 0.56 -0.5
218,584 + B158DRAFT_2078 0.58 -0.2
218,586 + B158DRAFT_2078 0.59 -0.4
218,589 + B158DRAFT_2078 0.59 -0.9
218,589 + B158DRAFT_2078 0.59 -0.9
218,604 - B158DRAFT_2078 0.62 -0.4
218,604 - B158DRAFT_2078 0.62 +0.3
218,619 - B158DRAFT_2078 0.65 -0.5
218,653 - B158DRAFT_2078 0.71 +0.1
218,789 - +0.2
218,814 + +0.3
218,814 + +0.3
218,822 - +0.8
218,822 - +0.4
218,822 - +0.3
218,822 - +0.4
218,822 - +0.4
218,822 - -0.3
218,891 + B158DRAFT_2079 0.26 +0.2
218,938 + B158DRAFT_2079 0.42 -0.1
219,103 - -0.8
219,154 - +0.0
219,264 - +0.0
219,264 - +0.0
219,292 - B158DRAFT_2080 0.11 -0.0
219,587 - B158DRAFT_2080 0.31 +0.3
219,587 - B158DRAFT_2080 0.31 +0.1
219,587 - B158DRAFT_2080 0.31 +0.2
219,605 - B158DRAFT_2080 0.32 -0.8
219,640 - B158DRAFT_2080 0.35 +0.0
219,689 + B158DRAFT_2080 0.38 +0.3
219,697 - B158DRAFT_2080 0.38 +0.6
219,697 - B158DRAFT_2080 0.38 -0.4
219,739 - B158DRAFT_2080 0.41 -0.1
219,795 - B158DRAFT_2080 0.45 +0.1
219,797 + B158DRAFT_2080 0.45 -0.4

Or see this region's nucleotide sequence