Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1128 and B158DRAFT_1129 overlap by 17 nucleotides B158DRAFT_1129 and B158DRAFT_1130 are separated by 126 nucleotides B158DRAFT_1130 and B158DRAFT_1131 are separated by 214 nucleotides
B158DRAFT_1128: B158DRAFT_1128 - hypothetical protein, at 1,168,306 to 1,168,815
_1128
B158DRAFT_1129: B158DRAFT_1129 - hypothetical protein, at 1,168,799 to 1,169,305
_1129
B158DRAFT_1130: B158DRAFT_1130 - RNA-binding proteins (RRM domain), at 1,169,432 to 1,169,686
_1130
B158DRAFT_1131: B158DRAFT_1131 - Imidazolonepropionase and related amidohydrolases, at 1,169,901 to 1,171,262
_1131
Position (kb)
1169
1170 Strain fitness (log2 ratio)
-1
0
1
2 at 1168.538 kb on - strand, within B158DRAFT_1128 at 1168.538 kb on - strand, within B158DRAFT_1128 at 1168.583 kb on - strand, within B158DRAFT_1128 at 1168.622 kb on - strand, within B158DRAFT_1128 at 1168.638 kb on + strand, within B158DRAFT_1128 at 1168.638 kb on + strand, within B158DRAFT_1128 at 1168.641 kb on - strand, within B158DRAFT_1128 at 1168.646 kb on - strand, within B158DRAFT_1128 at 1168.653 kb on + strand, within B158DRAFT_1128 at 1168.658 kb on + strand, within B158DRAFT_1128 at 1168.658 kb on + strand, within B158DRAFT_1128 at 1168.658 kb on + strand, within B158DRAFT_1128 at 1168.672 kb on + strand, within B158DRAFT_1128 at 1168.674 kb on - strand, within B158DRAFT_1128 at 1168.724 kb on - strand, within B158DRAFT_1128 at 1168.748 kb on + strand, within B158DRAFT_1128 at 1168.761 kb on - strand, within B158DRAFT_1128 at 1168.824 kb on - strand at 1168.847 kb on - strand at 1168.910 kb on + strand, within B158DRAFT_1129 at 1169.157 kb on + strand, within B158DRAFT_1129 at 1169.174 kb on - strand, within B158DRAFT_1129 at 1169.302 kb on + strand at 1169.310 kb on - strand at 1169.437 kb on - strand at 1169.525 kb on - strand, within B158DRAFT_1130 at 1169.532 kb on + strand, within B158DRAFT_1130 at 1169.560 kb on + strand, within B158DRAFT_1130 at 1169.560 kb on - strand, within B158DRAFT_1130 at 1169.560 kb on - strand, within B158DRAFT_1130 at 1169.568 kb on - strand, within B158DRAFT_1130 at 1169.608 kb on - strand, within B158DRAFT_1130 at 1169.610 kb on + strand, within B158DRAFT_1130 at 1169.610 kb on + strand, within B158DRAFT_1130 at 1169.618 kb on - strand, within B158DRAFT_1130 at 1169.618 kb on - strand, within B158DRAFT_1130 at 1169.618 kb on - strand, within B158DRAFT_1130 at 1169.632 kb on - strand, within B158DRAFT_1130 at 1169.649 kb on + strand, within B158DRAFT_1130 at 1169.657 kb on - strand, within B158DRAFT_1130 at 1169.808 kb on - strand at 1169.883 kb on + strand at 1169.973 kb on - strand at 1169.983 kb on - strand at 1169.993 kb on - strand at 1169.993 kb on - strand at 1170.033 kb on + strand at 1170.175 kb on - strand, within B158DRAFT_1131 at 1170.204 kb on - strand, within B158DRAFT_1131 at 1170.351 kb on + strand, within B158DRAFT_1131 at 1170.359 kb on - strand, within B158DRAFT_1131 at 1170.464 kb on + strand, within B158DRAFT_1131 at 1170.464 kb on + strand, within B158DRAFT_1131 at 1170.486 kb on - strand, within B158DRAFT_1131 at 1170.592 kb on + strand, within B158DRAFT_1131 at 1170.592 kb on + strand, within B158DRAFT_1131 at 1170.592 kb on + strand, within B158DRAFT_1131 at 1170.611 kb on + strand, within B158DRAFT_1131 at 1170.619 kb on - strand, within B158DRAFT_1131 at 1170.619 kb on - strand, within B158DRAFT_1131 at 1170.631 kb on + strand, within B158DRAFT_1131 at 1170.653 kb on - strand, within B158DRAFT_1131 at 1170.673 kb on + strand, within B158DRAFT_1131 at 1170.681 kb on - strand, within B158DRAFT_1131 at 1170.681 kb on - strand, within B158DRAFT_1131
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,168,538 - B158DRAFT_1128 0.45 +0.5 1,168,538 - B158DRAFT_1128 0.45 -1.5 1,168,583 - B158DRAFT_1128 0.54 -0.1 1,168,622 - B158DRAFT_1128 0.62 +1.5 1,168,638 + B158DRAFT_1128 0.65 -0.7 1,168,638 + B158DRAFT_1128 0.65 +0.1 1,168,641 - B158DRAFT_1128 0.66 +0.7 1,168,646 - B158DRAFT_1128 0.67 -0.0 1,168,653 + B158DRAFT_1128 0.68 -0.6 1,168,658 + B158DRAFT_1128 0.69 -0.1 1,168,658 + B158DRAFT_1128 0.69 +0.1 1,168,658 + B158DRAFT_1128 0.69 -0.2 1,168,672 + B158DRAFT_1128 0.72 +0.3 1,168,674 - B158DRAFT_1128 0.72 +0.0 1,168,724 - B158DRAFT_1128 0.82 -0.5 1,168,748 + B158DRAFT_1128 0.87 -0.1 1,168,761 - B158DRAFT_1128 0.89 -0.9 1,168,824 - +0.2 1,168,847 - -0.9 1,168,910 + B158DRAFT_1129 0.22 +0.1 1,169,157 + B158DRAFT_1129 0.71 -0.2 1,169,174 - B158DRAFT_1129 0.74 +0.1 1,169,302 + +2.4 1,169,310 - +0.1 1,169,437 - -0.3 1,169,525 - B158DRAFT_1130 0.36 +0.8 1,169,532 + B158DRAFT_1130 0.39 +0.7 1,169,560 + B158DRAFT_1130 0.50 -0.7 1,169,560 - B158DRAFT_1130 0.50 +0.0 1,169,560 - B158DRAFT_1130 0.50 +0.2 1,169,568 - B158DRAFT_1130 0.53 -0.4 1,169,608 - B158DRAFT_1130 0.69 -0.4 1,169,610 + B158DRAFT_1130 0.70 -0.3 1,169,610 + B158DRAFT_1130 0.70 -0.5 1,169,618 - B158DRAFT_1130 0.73 +0.6 1,169,618 - B158DRAFT_1130 0.73 -0.6 1,169,618 - B158DRAFT_1130 0.73 +0.1 1,169,632 - B158DRAFT_1130 0.78 -0.3 1,169,649 + B158DRAFT_1130 0.85 -0.1 1,169,657 - B158DRAFT_1130 0.88 -0.1 1,169,808 - -0.1 1,169,883 + -0.2 1,169,973 - -0.2 1,169,983 - +0.6 1,169,993 - -0.2 1,169,993 - +0.3 1,170,033 + +0.0 1,170,175 - B158DRAFT_1131 0.20 -0.2 1,170,204 - B158DRAFT_1131 0.22 -0.3 1,170,351 + B158DRAFT_1131 0.33 -0.0 1,170,359 - B158DRAFT_1131 0.34 -0.2 1,170,464 + B158DRAFT_1131 0.41 +0.1 1,170,464 + B158DRAFT_1131 0.41 -0.2 1,170,486 - B158DRAFT_1131 0.43 -0.1 1,170,592 + B158DRAFT_1131 0.51 +0.4 1,170,592 + B158DRAFT_1131 0.51 -0.0 1,170,592 + B158DRAFT_1131 0.51 +0.2 1,170,611 + B158DRAFT_1131 0.52 -0.4 1,170,619 - B158DRAFT_1131 0.53 -0.3 1,170,619 - B158DRAFT_1131 0.53 -0.1 1,170,631 + B158DRAFT_1131 0.54 -0.3 1,170,653 - B158DRAFT_1131 0.55 +0.5 1,170,673 + B158DRAFT_1131 0.57 -0.7 1,170,681 - B158DRAFT_1131 0.57 -0.3 1,170,681 - B158DRAFT_1131 0.57 +0.1
Or see this region's nucleotide sequence