Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0948

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0946 and B158DRAFT_0947 are separated by 305 nucleotidesB158DRAFT_0947 and B158DRAFT_0948 overlap by 4 nucleotidesB158DRAFT_0948 and B158DRAFT_0949 overlap by 4 nucleotides B158DRAFT_0946: B158DRAFT_0946 - transcriptional regulator, BadM/Rrf2 family, at 974,759 to 975,205 _0946 B158DRAFT_0947: B158DRAFT_0947 - transcriptional regulator, TetR family, at 975,511 to 976,119 _0947 B158DRAFT_0948: B158DRAFT_0948 - RND family efflux transporter, MFP subunit, at 976,116 to 977,297 _0948 B158DRAFT_0949: B158DRAFT_0949 - ABC-type transport system, involved in lipoprotein release, permease component, at 977,294 to 978,496 _0949 Position (kb) 976 977 978Strain fitness (log2 ratio) -1 0 1 2at 975.134 kb on - strand, within B158DRAFT_0946at 975.134 kb on - strand, within B158DRAFT_0946at 975.137 kb on + strand, within B158DRAFT_0946at 975.154 kb on + strand, within B158DRAFT_0946at 975.207 kb on - strandat 975.231 kb on + strandat 975.239 kb on - strandat 975.239 kb on - strandat 975.239 kb on - strandat 975.239 kb on - strandat 975.241 kb on + strandat 975.260 kb on - strandat 975.289 kb on + strandat 975.342 kb on + strandat 975.549 kb on - strandat 975.604 kb on + strand, within B158DRAFT_0947at 975.606 kb on + strand, within B158DRAFT_0947at 975.606 kb on + strand, within B158DRAFT_0947at 975.646 kb on - strand, within B158DRAFT_0947at 975.646 kb on - strand, within B158DRAFT_0947at 975.697 kb on + strand, within B158DRAFT_0947at 975.817 kb on + strand, within B158DRAFT_0947at 975.825 kb on - strand, within B158DRAFT_0947at 975.825 kb on - strand, within B158DRAFT_0947at 975.825 kb on - strand, within B158DRAFT_0947at 975.849 kb on + strand, within B158DRAFT_0947at 975.859 kb on + strand, within B158DRAFT_0947at 975.859 kb on + strand, within B158DRAFT_0947at 975.867 kb on - strand, within B158DRAFT_0947at 975.867 kb on - strand, within B158DRAFT_0947at 975.911 kb on + strand, within B158DRAFT_0947at 975.940 kb on + strand, within B158DRAFT_0947at 975.940 kb on + strand, within B158DRAFT_0947at 975.940 kb on + strand, within B158DRAFT_0947at 975.950 kb on - strand, within B158DRAFT_0947at 976.004 kb on + strand, within B158DRAFT_0947at 976.012 kb on - strand, within B158DRAFT_0947at 976.199 kb on + strandat 976.201 kb on + strandat 976.234 kb on + strandat 976.234 kb on + strandat 976.234 kb on + strandat 976.234 kb on + strandat 976.234 kb on + strandat 976.235 kb on + strand, within B158DRAFT_0948at 976.235 kb on - strand, within B158DRAFT_0948at 976.242 kb on - strand, within B158DRAFT_0948at 976.242 kb on - strand, within B158DRAFT_0948at 976.243 kb on - strand, within B158DRAFT_0948at 976.258 kb on + strand, within B158DRAFT_0948at 976.427 kb on + strand, within B158DRAFT_0948at 976.441 kb on + strand, within B158DRAFT_0948at 976.441 kb on + strand, within B158DRAFT_0948at 976.441 kb on + strand, within B158DRAFT_0948at 976.441 kb on + strand, within B158DRAFT_0948at 976.473 kb on + strand, within B158DRAFT_0948at 976.629 kb on + strand, within B158DRAFT_0948at 976.629 kb on + strand, within B158DRAFT_0948at 976.637 kb on - strand, within B158DRAFT_0948at 976.710 kb on - strand, within B158DRAFT_0948at 976.742 kb on + strand, within B158DRAFT_0948at 976.750 kb on - strand, within B158DRAFT_0948at 976.828 kb on + strand, within B158DRAFT_0948at 976.851 kb on + strand, within B158DRAFT_0948at 976.851 kb on + strand, within B158DRAFT_0948at 976.859 kb on - strand, within B158DRAFT_0948at 976.860 kb on - strand, within B158DRAFT_0948at 976.860 kb on - strand, within B158DRAFT_0948at 976.998 kb on + strand, within B158DRAFT_0948at 976.998 kb on + strand, within B158DRAFT_0948at 977.090 kb on + strand, within B158DRAFT_0948at 977.150 kb on - strand, within B158DRAFT_0948at 977.166 kb on + strand, within B158DRAFT_0948at 977.174 kb on - strand, within B158DRAFT_0948at 977.184 kb on - strandat 977.220 kb on + strandat 977.228 kb on - strandat 977.284 kb on - strandat 977.301 kb on + strandat 977.324 kb on - strandat 977.326 kb on + strandat 977.334 kb on - strandat 977.357 kb on + strandat 977.429 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.463 kb on - strand, within B158DRAFT_0949at 977.463 kb on - strand, within B158DRAFT_0949at 977.463 kb on - strand, within B158DRAFT_0949at 977.463 kb on - strand, within B158DRAFT_0949at 977.539 kb on - strand, within B158DRAFT_0949at 977.542 kb on + strand, within B158DRAFT_0949at 977.550 kb on - strand, within B158DRAFT_0949at 977.590 kb on - strand, within B158DRAFT_0949at 977.592 kb on + strand, within B158DRAFT_0949at 977.592 kb on + strand, within B158DRAFT_0949at 977.594 kb on + strand, within B158DRAFT_0949at 977.651 kb on - strand, within B158DRAFT_0949at 977.656 kb on - strand, within B158DRAFT_0949at 977.743 kb on + strand, within B158DRAFT_0949at 977.780 kb on - strand, within B158DRAFT_0949at 977.799 kb on + strand, within B158DRAFT_0949at 977.858 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.965 kb on - strand, within B158DRAFT_0949at 977.965 kb on - strand, within B158DRAFT_0949at 978.018 kb on - strand, within B158DRAFT_0949at 978.167 kb on + strand, within B158DRAFT_0949at 978.169 kb on + strand, within B158DRAFT_0949

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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975,134 - B158DRAFT_0946 0.84 +0.1
975,134 - B158DRAFT_0946 0.84 +0.3
975,137 + B158DRAFT_0946 0.85 +0.1
975,154 + B158DRAFT_0946 0.88 -0.2
975,207 - +0.0
975,231 + +0.9
975,239 - -0.4
975,239 - -0.5
975,239 - -0.1
975,239 - +1.7
975,241 + +2.6
975,260 - -0.7
975,289 + -0.3
975,342 + -0.1
975,549 - -0.5
975,604 + B158DRAFT_0947 0.15 -0.3
975,606 + B158DRAFT_0947 0.16 -0.3
975,606 + B158DRAFT_0947 0.16 +0.1
975,646 - B158DRAFT_0947 0.22 +0.1
975,646 - B158DRAFT_0947 0.22 -0.3
975,697 + B158DRAFT_0947 0.31 +0.1
975,817 + B158DRAFT_0947 0.50 +0.3
975,825 - B158DRAFT_0947 0.52 -0.1
975,825 - B158DRAFT_0947 0.52 -0.8
975,825 - B158DRAFT_0947 0.52 -0.1
975,849 + B158DRAFT_0947 0.56 +0.2
975,859 + B158DRAFT_0947 0.57 -1.4
975,859 + B158DRAFT_0947 0.57 -1.4
975,867 - B158DRAFT_0947 0.58 -0.2
975,867 - B158DRAFT_0947 0.58 -0.4
975,911 + B158DRAFT_0947 0.66 -0.3
975,940 + B158DRAFT_0947 0.70 +0.1
975,940 + B158DRAFT_0947 0.70 +0.6
975,940 + B158DRAFT_0947 0.70 -0.3
975,950 - B158DRAFT_0947 0.72 -0.1
976,004 + B158DRAFT_0947 0.81 -0.2
976,012 - B158DRAFT_0947 0.82 +0.2
976,199 + -0.2
976,201 + +0.2
976,234 + +0.4
976,234 + -0.0
976,234 + +0.1
976,234 + -0.3
976,234 + -0.8
976,235 + B158DRAFT_0948 0.10 -0.4
976,235 - B158DRAFT_0948 0.10 +0.2
976,242 - B158DRAFT_0948 0.11 +0.0
976,242 - B158DRAFT_0948 0.11 +0.0
976,243 - B158DRAFT_0948 0.11 -0.2
976,258 + B158DRAFT_0948 0.12 +0.2
976,427 + B158DRAFT_0948 0.26 -0.3
976,441 + B158DRAFT_0948 0.27 +0.1
976,441 + B158DRAFT_0948 0.27 +0.2
976,441 + B158DRAFT_0948 0.27 -0.2
976,441 + B158DRAFT_0948 0.27 +0.2
976,473 + B158DRAFT_0948 0.30 +0.4
976,629 + B158DRAFT_0948 0.43 -0.3
976,629 + B158DRAFT_0948 0.43 -0.3
976,637 - B158DRAFT_0948 0.44 -0.1
976,710 - B158DRAFT_0948 0.50 -0.6
976,742 + B158DRAFT_0948 0.53 +0.2
976,750 - B158DRAFT_0948 0.54 -0.3
976,828 + B158DRAFT_0948 0.60 -0.2
976,851 + B158DRAFT_0948 0.62 +0.2
976,851 + B158DRAFT_0948 0.62 -0.5
976,859 - B158DRAFT_0948 0.63 -0.2
976,860 - B158DRAFT_0948 0.63 -0.3
976,860 - B158DRAFT_0948 0.63 -0.1
976,998 + B158DRAFT_0948 0.75 -0.2
976,998 + B158DRAFT_0948 0.75 +0.9
977,090 + B158DRAFT_0948 0.82 +0.0
977,150 - B158DRAFT_0948 0.87 -0.3
977,166 + B158DRAFT_0948 0.89 +0.3
977,174 - B158DRAFT_0948 0.90 +0.2
977,184 - +0.2
977,220 + +0.0
977,228 - +0.0
977,284 - -0.3
977,301 + +0.3
977,324 - +0.1
977,326 + -1.0
977,334 - -0.3
977,357 + -1.4
977,429 + B158DRAFT_0949 0.11 -0.7
977,455 + B158DRAFT_0949 0.13 -0.4
977,455 + B158DRAFT_0949 0.13 +0.3
977,455 + B158DRAFT_0949 0.13 -0.0
977,455 + B158DRAFT_0949 0.13 +0.2
977,455 + B158DRAFT_0949 0.13 +0.4
977,455 + B158DRAFT_0949 0.13 +0.1
977,455 + B158DRAFT_0949 0.13 +0.1
977,463 - B158DRAFT_0949 0.14 +0.3
977,463 - B158DRAFT_0949 0.14 -0.4
977,463 - B158DRAFT_0949 0.14 -0.6
977,463 - B158DRAFT_0949 0.14 -1.3
977,539 - B158DRAFT_0949 0.20 +0.4
977,542 + B158DRAFT_0949 0.21 -1.1
977,550 - B158DRAFT_0949 0.21 +0.1
977,590 - B158DRAFT_0949 0.25 -0.2
977,592 + B158DRAFT_0949 0.25 -0.4
977,592 + B158DRAFT_0949 0.25 +1.0
977,594 + B158DRAFT_0949 0.25 -0.9
977,651 - B158DRAFT_0949 0.30 +0.1
977,656 - B158DRAFT_0949 0.30 -0.2
977,743 + B158DRAFT_0949 0.37 -0.5
977,780 - B158DRAFT_0949 0.40 -1.3
977,799 + B158DRAFT_0949 0.42 +0.0
977,858 + B158DRAFT_0949 0.47 -0.1
977,957 + B158DRAFT_0949 0.55 -0.3
977,957 + B158DRAFT_0949 0.55 -0.7
977,957 + B158DRAFT_0949 0.55 -0.2
977,957 + B158DRAFT_0949 0.55 -0.2
977,957 + B158DRAFT_0949 0.55 +0.3
977,957 + B158DRAFT_0949 0.55 -0.5
977,965 - B158DRAFT_0949 0.56 -0.8
977,965 - B158DRAFT_0949 0.56 -0.5
978,018 - B158DRAFT_0949 0.60 -0.1
978,167 + B158DRAFT_0949 0.73 -0.3
978,169 + B158DRAFT_0949 0.73 -0.5

Or see this region's nucleotide sequence