Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0762 and B158DRAFT_0763 are separated by 96 nucleotides B158DRAFT_0763 and B158DRAFT_0764 are separated by 12 nucleotides B158DRAFT_0764 and B158DRAFT_0765 are separated by 11 nucleotides
B158DRAFT_0762: B158DRAFT_0762 - type IV pilus secretin (or competence protein) PilQ, at 768,016 to 770,106
_0762
B158DRAFT_0763: B158DRAFT_0763 - shikimate kinase (EC 2.7.1.71), at 770,203 to 770,727
_0763
B158DRAFT_0764: B158DRAFT_0764 - 3-dehydroquinate synthase (EC 4.2.3.4), at 770,740 to 771,822
_0764
B158DRAFT_0765: B158DRAFT_0765 - Sporulation related domain., at 771,834 to 773,090
_0765
Position (kb) 770
771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 769.789 kb on + strand, within B158DRAFT_0762 at 769.827 kb on + strand, within B158DRAFT_0762 at 769.996 kb on + strand at 770.002 kb on - strand at 770.003 kb on - strand at 770.143 kb on - strand at 770.439 kb on - strand, within B158DRAFT_0763 at 770.834 kb on + strand at 770.851 kb on + strand, within B158DRAFT_0764 at 770.888 kb on + strand, within B158DRAFT_0764 at 770.888 kb on + strand, within B158DRAFT_0764 at 770.888 kb on + strand, within B158DRAFT_0764 at 770.888 kb on + strand, within B158DRAFT_0764 at 770.891 kb on - strand, within B158DRAFT_0764 at 770.896 kb on - strand, within B158DRAFT_0764 at 770.896 kb on - strand, within B158DRAFT_0764 at 770.898 kb on + strand, within B158DRAFT_0764 at 770.898 kb on + strand, within B158DRAFT_0764 at 770.898 kb on + strand, within B158DRAFT_0764 at 770.898 kb on + strand, within B158DRAFT_0764 at 770.906 kb on - strand, within B158DRAFT_0764 at 770.906 kb on - strand, within B158DRAFT_0764 at 770.929 kb on - strand, within B158DRAFT_0764 at 770.948 kb on + strand, within B158DRAFT_0764 at 770.951 kb on - strand, within B158DRAFT_0764 at 770.953 kb on + strand, within B158DRAFT_0764 at 770.966 kb on + strand, within B158DRAFT_0764 at 770.974 kb on - strand, within B158DRAFT_0764 at 770.978 kb on + strand, within B158DRAFT_0764 at 771.018 kb on - strand, within B158DRAFT_0764 at 771.132 kb on + strand, within B158DRAFT_0764 at 771.138 kb on + strand, within B158DRAFT_0764 at 771.140 kb on - strand, within B158DRAFT_0764 at 771.220 kb on - strand, within B158DRAFT_0764 at 771.250 kb on - strand, within B158DRAFT_0764 at 771.291 kb on + strand, within B158DRAFT_0764 at 771.291 kb on + strand, within B158DRAFT_0764 at 771.472 kb on + strand, within B158DRAFT_0764 at 771.671 kb on - strand, within B158DRAFT_0764 at 771.674 kb on - strand, within B158DRAFT_0764 at 771.676 kb on + strand, within B158DRAFT_0764 at 771.684 kb on - strand, within B158DRAFT_0764 at 771.732 kb on + strand at 771.798 kb on + strand at 771.816 kb on + strand at 771.825 kb on - strand at 771.838 kb on - strand at 772.075 kb on + strand, within B158DRAFT_0765 at 772.120 kb on - strand, within B158DRAFT_0765 at 772.164 kb on - strand, within B158DRAFT_0765 at 772.284 kb on + strand, within B158DRAFT_0765 at 772.328 kb on + strand, within B158DRAFT_0765 at 772.328 kb on + strand, within B158DRAFT_0765 at 772.358 kb on + strand, within B158DRAFT_0765 at 772.387 kb on - strand, within B158DRAFT_0765 at 772.503 kb on - strand, within B158DRAFT_0765 at 772.560 kb on - strand, within B158DRAFT_0765 at 772.603 kb on + strand, within B158DRAFT_0765 at 772.610 kb on + strand, within B158DRAFT_0765 at 772.664 kb on + strand, within B158DRAFT_0765 at 772.698 kb on - strand, within B158DRAFT_0765 at 772.723 kb on - strand, within B158DRAFT_0765 at 772.757 kb on - strand, within B158DRAFT_0765
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 769,789 + B158DRAFT_0762 0.85 -0.7 769,827 + B158DRAFT_0762 0.87 -0.1 769,996 + -0.5 770,002 - -1.1 770,003 - +0.4 770,143 - -0.1 770,439 - B158DRAFT_0763 0.45 -1.5 770,834 + -1.5 770,851 + B158DRAFT_0764 0.10 -1.1 770,888 + B158DRAFT_0764 0.14 +1.1 770,888 + B158DRAFT_0764 0.14 -1.4 770,888 + B158DRAFT_0764 0.14 -3.5 770,888 + B158DRAFT_0764 0.14 -0.8 770,891 - B158DRAFT_0764 0.14 -1.7 770,896 - B158DRAFT_0764 0.14 -2.4 770,896 - B158DRAFT_0764 0.14 -1.9 770,898 + B158DRAFT_0764 0.15 -2.1 770,898 + B158DRAFT_0764 0.15 -2.5 770,898 + B158DRAFT_0764 0.15 -1.9 770,898 + B158DRAFT_0764 0.15 -1.4 770,906 - B158DRAFT_0764 0.15 -3.3 770,906 - B158DRAFT_0764 0.15 -1.2 770,929 - B158DRAFT_0764 0.17 -1.9 770,948 + B158DRAFT_0764 0.19 -2.2 770,951 - B158DRAFT_0764 0.19 -1.9 770,953 + B158DRAFT_0764 0.20 -1.9 770,966 + B158DRAFT_0764 0.21 -1.7 770,974 - B158DRAFT_0764 0.22 -3.0 770,978 + B158DRAFT_0764 0.22 -2.3 771,018 - B158DRAFT_0764 0.26 -2.5 771,132 + B158DRAFT_0764 0.36 -3.2 771,138 + B158DRAFT_0764 0.37 -2.8 771,140 - B158DRAFT_0764 0.37 -2.1 771,220 - B158DRAFT_0764 0.44 -1.2 771,250 - B158DRAFT_0764 0.47 -1.9 771,291 + B158DRAFT_0764 0.51 -1.3 771,291 + B158DRAFT_0764 0.51 -2.5 771,472 + B158DRAFT_0764 0.68 -2.1 771,671 - B158DRAFT_0764 0.86 -3.2 771,674 - B158DRAFT_0764 0.86 -0.5 771,676 + B158DRAFT_0764 0.86 -1.7 771,684 - B158DRAFT_0764 0.87 -0.5 771,732 + -1.7 771,798 + +0.5 771,816 + -0.8 771,825 - -0.8 771,838 - -0.5 772,075 + B158DRAFT_0765 0.19 -0.6 772,120 - B158DRAFT_0765 0.23 -0.5 772,164 - B158DRAFT_0765 0.26 -0.8 772,284 + B158DRAFT_0765 0.36 -0.6 772,328 + B158DRAFT_0765 0.39 -0.7 772,328 + B158DRAFT_0765 0.39 -0.0 772,358 + B158DRAFT_0765 0.42 +0.0 772,387 - B158DRAFT_0765 0.44 -0.1 772,503 - B158DRAFT_0765 0.53 -0.3 772,560 - B158DRAFT_0765 0.58 -0.4 772,603 + B158DRAFT_0765 0.61 -0.3 772,610 + B158DRAFT_0765 0.62 +0.1 772,664 + B158DRAFT_0765 0.66 -0.3 772,698 - B158DRAFT_0765 0.69 +0.1 772,723 - B158DRAFT_0765 0.71 -0.2 772,757 - B158DRAFT_0765 0.73 -0.3
Or see this region's nucleotide sequence