Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0518

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0516 and B158DRAFT_0517 overlap by 4 nucleotidesB158DRAFT_0517 and B158DRAFT_0518 are separated by 53 nucleotidesB158DRAFT_0518 and B158DRAFT_0519 are separated by 176 nucleotidesB158DRAFT_0519 and B158DRAFT_0520 are separated by 103 nucleotides B158DRAFT_0516: B158DRAFT_0516 - hypothetical protein, at 524,803 to 527,658 _0516 B158DRAFT_0517: B158DRAFT_0517 - hypothetical protein, at 527,655 to 528,485 _0517 B158DRAFT_0518: B158DRAFT_0518 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 528,539 to 529,828 _0518 B158DRAFT_0519: B158DRAFT_0519 - Acyl carrier protein, at 530,005 to 530,268 _0519 B158DRAFT_0520: B158DRAFT_0520 - putative PEP-CTERM system histidine kinase, at 530,372 to 532,369 _0520 Position (kb) 528 529 530Strain fitness (log2 ratio) -1 0 1at 527.539 kb on - strandat 527.539 kb on - strandat 527.602 kb on - strandat 527.616 kb on + strandat 527.616 kb on + strandat 527.636 kb on - strandat 527.643 kb on - strandat 527.767 kb on - strand, within B158DRAFT_0517at 527.767 kb on - strand, within B158DRAFT_0517at 527.896 kb on + strand, within B158DRAFT_0517at 527.904 kb on - strand, within B158DRAFT_0517at 527.925 kb on - strand, within B158DRAFT_0517at 528.044 kb on - strand, within B158DRAFT_0517at 528.068 kb on + strand, within B158DRAFT_0517at 528.166 kb on - strand, within B158DRAFT_0517at 528.168 kb on + strand, within B158DRAFT_0517at 528.370 kb on + strand, within B158DRAFT_0517at 528.370 kb on + strand, within B158DRAFT_0517at 528.370 kb on + strand, within B158DRAFT_0517at 528.378 kb on - strand, within B158DRAFT_0517at 528.406 kb on - strandat 528.406 kb on - strandat 528.428 kb on + strandat 528.450 kb on - strandat 528.544 kb on + strandat 528.562 kb on - strandat 528.576 kb on - strandat 528.643 kb on + strandat 528.756 kb on + strand, within B158DRAFT_0518at 528.764 kb on - strand, within B158DRAFT_0518at 528.764 kb on - strand, within B158DRAFT_0518at 528.877 kb on + strand, within B158DRAFT_0518at 528.885 kb on - strand, within B158DRAFT_0518at 528.885 kb on - strand, within B158DRAFT_0518at 528.890 kb on + strand, within B158DRAFT_0518at 528.890 kb on + strand, within B158DRAFT_0518at 528.923 kb on + strand, within B158DRAFT_0518at 528.931 kb on - strand, within B158DRAFT_0518at 528.941 kb on - strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.948 kb on + strand, within B158DRAFT_0518at 528.956 kb on - strand, within B158DRAFT_0518at 528.956 kb on - strand, within B158DRAFT_0518at 528.956 kb on - strand, within B158DRAFT_0518at 528.956 kb on - strand, within B158DRAFT_0518at 528.956 kb on - strand, within B158DRAFT_0518at 528.966 kb on + strand, within B158DRAFT_0518at 528.966 kb on + strand, within B158DRAFT_0518at 529.003 kb on - strand, within B158DRAFT_0518at 529.014 kb on + strand, within B158DRAFT_0518at 529.039 kb on + strand, within B158DRAFT_0518at 529.039 kb on + strand, within B158DRAFT_0518at 529.040 kb on - strand, within B158DRAFT_0518at 529.047 kb on - strand, within B158DRAFT_0518at 529.052 kb on - strand, within B158DRAFT_0518at 529.056 kb on + strand, within B158DRAFT_0518at 529.091 kb on + strand, within B158DRAFT_0518at 529.098 kb on + strand, within B158DRAFT_0518at 529.098 kb on + strand, within B158DRAFT_0518at 529.106 kb on + strand, within B158DRAFT_0518at 529.126 kb on - strand, within B158DRAFT_0518at 529.138 kb on + strand, within B158DRAFT_0518at 529.197 kb on + strand, within B158DRAFT_0518at 529.197 kb on + strand, within B158DRAFT_0518at 529.197 kb on + strand, within B158DRAFT_0518at 529.197 kb on + strand, within B158DRAFT_0518at 529.197 kb on + strand, within B158DRAFT_0518at 529.197 kb on + strand, within B158DRAFT_0518at 529.197 kb on + strand, within B158DRAFT_0518at 529.205 kb on - strand, within B158DRAFT_0518at 529.205 kb on - strand, within B158DRAFT_0518at 529.205 kb on - strand, within B158DRAFT_0518at 529.205 kb on - strand, within B158DRAFT_0518at 529.205 kb on - strand, within B158DRAFT_0518at 529.205 kb on - strand, within B158DRAFT_0518at 529.205 kb on - strand, within B158DRAFT_0518at 529.205 kb on - strand, within B158DRAFT_0518at 529.205 kb on - strand, within B158DRAFT_0518at 529.298 kb on - strand, within B158DRAFT_0518at 529.304 kb on - strand, within B158DRAFT_0518at 529.344 kb on + strand, within B158DRAFT_0518at 529.344 kb on + strand, within B158DRAFT_0518at 529.352 kb on - strand, within B158DRAFT_0518at 529.352 kb on - strand, within B158DRAFT_0518at 529.352 kb on - strand, within B158DRAFT_0518at 529.352 kb on - strand, within B158DRAFT_0518at 529.352 kb on - strand, within B158DRAFT_0518at 529.352 kb on - strand, within B158DRAFT_0518at 529.352 kb on - strand, within B158DRAFT_0518at 529.385 kb on - strand, within B158DRAFT_0518at 529.409 kb on + strand, within B158DRAFT_0518at 529.420 kb on + strand, within B158DRAFT_0518at 529.428 kb on - strand, within B158DRAFT_0518at 529.429 kb on + strand, within B158DRAFT_0518at 529.429 kb on + strand, within B158DRAFT_0518at 529.437 kb on - strand, within B158DRAFT_0518at 529.452 kb on - strand, within B158DRAFT_0518at 529.475 kb on + strand, within B158DRAFT_0518at 529.476 kb on + strand, within B158DRAFT_0518at 529.484 kb on - strand, within B158DRAFT_0518at 529.484 kb on - strand, within B158DRAFT_0518at 529.498 kb on + strand, within B158DRAFT_0518at 529.498 kb on + strand, within B158DRAFT_0518at 529.507 kb on + strand, within B158DRAFT_0518at 529.507 kb on + strand, within B158DRAFT_0518at 529.515 kb on - strand, within B158DRAFT_0518at 529.650 kb on + strand, within B158DRAFT_0518at 529.658 kb on - strand, within B158DRAFT_0518at 529.701 kb on + strandat 529.701 kb on + strandat 529.701 kb on + strandat 529.701 kb on + strandat 529.704 kb on - strandat 529.709 kb on - strandat 529.709 kb on - strandat 529.709 kb on - strandat 529.709 kb on - strandat 529.709 kb on - strandat 529.709 kb on - strandat 529.716 kb on + strandat 529.716 kb on + strandat 529.716 kb on + strandat 529.716 kb on + strandat 529.724 kb on - strandat 529.724 kb on - strandat 529.813 kb on - strandat 530.242 kb on + strandat 530.413 kb on + strandat 530.442 kb on + strandat 530.442 kb on + strandat 530.447 kb on + strandat 530.447 kb on + strandat 530.447 kb on + strandat 530.447 kb on + strandat 530.447 kb on + strandat 530.450 kb on - strandat 530.450 kb on - strandat 530.450 kb on - strandat 530.452 kb on + strandat 530.455 kb on - strandat 530.455 kb on - strandat 530.498 kb on + strandat 530.501 kb on - strandat 530.576 kb on + strand, within B158DRAFT_0520at 530.576 kb on + strand, within B158DRAFT_0520at 530.576 kb on + strand, within B158DRAFT_0520at 530.584 kb on - strand, within B158DRAFT_0520at 530.661 kb on + strand, within B158DRAFT_0520at 530.661 kb on + strand, within B158DRAFT_0520at 530.661 kb on + strand, within B158DRAFT_0520at 530.661 kb on + strand, within B158DRAFT_0520at 530.661 kb on + strand, within B158DRAFT_0520at 530.669 kb on - strand, within B158DRAFT_0520at 530.669 kb on - strand, within B158DRAFT_0520at 530.669 kb on - strand, within B158DRAFT_0520at 530.669 kb on - strand, within B158DRAFT_0520at 530.669 kb on - strand, within B158DRAFT_0520at 530.669 kb on - strand, within B158DRAFT_0520at 530.669 kb on - strand, within B158DRAFT_0520at 530.706 kb on - strand, within B158DRAFT_0520at 530.805 kb on + strand, within B158DRAFT_0520at 530.810 kb on + strand, within B158DRAFT_0520at 530.810 kb on + strand, within B158DRAFT_0520at 530.818 kb on - strand, within B158DRAFT_0520at 530.818 kb on - strand, within B158DRAFT_0520at 530.820 kb on - strand, within B158DRAFT_0520at 530.822 kb on + strand, within B158DRAFT_0520at 530.822 kb on + strand, within B158DRAFT_0520at 530.822 kb on + strand, within B158DRAFT_0520at 530.822 kb on + strand, within B158DRAFT_0520at 530.822 kb on + strand, within B158DRAFT_0520at 530.822 kb on + strand, within B158DRAFT_0520

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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527,539 - -0.2
527,539 - -0.3
527,602 - -0.5
527,616 + +0.2
527,616 + +0.0
527,636 - +0.2
527,643 - +0.1
527,767 - B158DRAFT_0517 0.13 -0.4
527,767 - B158DRAFT_0517 0.13 +0.1
527,896 + B158DRAFT_0517 0.29 -0.0
527,904 - B158DRAFT_0517 0.30 +0.1
527,925 - B158DRAFT_0517 0.32 -1.6
528,044 - B158DRAFT_0517 0.47 -0.9
528,068 + B158DRAFT_0517 0.50 -0.3
528,166 - B158DRAFT_0517 0.61 -0.1
528,168 + B158DRAFT_0517 0.62 +0.5
528,370 + B158DRAFT_0517 0.86 +0.1
528,370 + B158DRAFT_0517 0.86 -0.1
528,370 + B158DRAFT_0517 0.86 +0.3
528,378 - B158DRAFT_0517 0.87 -0.1
528,406 - -0.6
528,406 - +0.4
528,428 + -1.3
528,450 - +0.1
528,544 + -0.2
528,562 - +0.1
528,576 - +0.1
528,643 + +0.1
528,756 + B158DRAFT_0518 0.17 -0.5
528,764 - B158DRAFT_0518 0.17 -0.2
528,764 - B158DRAFT_0518 0.17 -1.0
528,877 + B158DRAFT_0518 0.26 -0.7
528,885 - B158DRAFT_0518 0.27 -0.0
528,885 - B158DRAFT_0518 0.27 -0.1
528,890 + B158DRAFT_0518 0.27 -0.5
528,890 + B158DRAFT_0518 0.27 -0.7
528,923 + B158DRAFT_0518 0.30 -0.2
528,931 - B158DRAFT_0518 0.30 +0.1
528,941 - B158DRAFT_0518 0.31 +0.1
528,948 + B158DRAFT_0518 0.32 -0.4
528,948 + B158DRAFT_0518 0.32 -0.4
528,948 + B158DRAFT_0518 0.32 +0.1
528,948 + B158DRAFT_0518 0.32 -0.5
528,948 + B158DRAFT_0518 0.32 +0.4
528,948 + B158DRAFT_0518 0.32 -0.5
528,948 + B158DRAFT_0518 0.32 -0.2
528,948 + B158DRAFT_0518 0.32 -0.1
528,948 + B158DRAFT_0518 0.32 +1.5
528,948 + B158DRAFT_0518 0.32 +0.2
528,956 - B158DRAFT_0518 0.32 -0.1
528,956 - B158DRAFT_0518 0.32 -0.3
528,956 - B158DRAFT_0518 0.32 +1.0
528,956 - B158DRAFT_0518 0.32 -0.2
528,956 - B158DRAFT_0518 0.32 -0.2
528,966 + B158DRAFT_0518 0.33 -0.1
528,966 + B158DRAFT_0518 0.33 +0.0
529,003 - B158DRAFT_0518 0.36 -0.2
529,014 + B158DRAFT_0518 0.37 +0.3
529,039 + B158DRAFT_0518 0.39 +0.3
529,039 + B158DRAFT_0518 0.39 -0.1
529,040 - B158DRAFT_0518 0.39 +0.1
529,047 - B158DRAFT_0518 0.39 +0.5
529,052 - B158DRAFT_0518 0.40 -0.5
529,056 + B158DRAFT_0518 0.40 -1.0
529,091 + B158DRAFT_0518 0.43 -0.4
529,098 + B158DRAFT_0518 0.43 -0.4
529,098 + B158DRAFT_0518 0.43 +0.3
529,106 + B158DRAFT_0518 0.44 +0.4
529,126 - B158DRAFT_0518 0.46 -0.2
529,138 + B158DRAFT_0518 0.46 +0.3
529,197 + B158DRAFT_0518 0.51 +0.7
529,197 + B158DRAFT_0518 0.51 -0.3
529,197 + B158DRAFT_0518 0.51 +0.1
529,197 + B158DRAFT_0518 0.51 -0.2
529,197 + B158DRAFT_0518 0.51 -0.9
529,197 + B158DRAFT_0518 0.51 +0.2
529,197 + B158DRAFT_0518 0.51 -0.3
529,205 - B158DRAFT_0518 0.52 -0.0
529,205 - B158DRAFT_0518 0.52 -0.0
529,205 - B158DRAFT_0518 0.52 -0.1
529,205 - B158DRAFT_0518 0.52 -0.5
529,205 - B158DRAFT_0518 0.52 +0.4
529,205 - B158DRAFT_0518 0.52 -0.7
529,205 - B158DRAFT_0518 0.52 -0.1
529,205 - B158DRAFT_0518 0.52 +0.0
529,205 - B158DRAFT_0518 0.52 +0.3
529,298 - B158DRAFT_0518 0.59 -0.5
529,304 - B158DRAFT_0518 0.59 -0.1
529,344 + B158DRAFT_0518 0.62 +0.2
529,344 + B158DRAFT_0518 0.62 -1.2
529,352 - B158DRAFT_0518 0.63 -0.1
529,352 - B158DRAFT_0518 0.63 -0.3
529,352 - B158DRAFT_0518 0.63 -0.2
529,352 - B158DRAFT_0518 0.63 +0.3
529,352 - B158DRAFT_0518 0.63 -0.3
529,352 - B158DRAFT_0518 0.63 -0.3
529,352 - B158DRAFT_0518 0.63 -0.1
529,385 - B158DRAFT_0518 0.66 -0.2
529,409 + B158DRAFT_0518 0.67 +0.1
529,420 + B158DRAFT_0518 0.68 -0.1
529,428 - B158DRAFT_0518 0.69 -0.3
529,429 + B158DRAFT_0518 0.69 -0.5
529,429 + B158DRAFT_0518 0.69 -0.1
529,437 - B158DRAFT_0518 0.70 -0.2
529,452 - B158DRAFT_0518 0.71 +0.1
529,475 + B158DRAFT_0518 0.73 +0.2
529,476 + B158DRAFT_0518 0.73 -0.4
529,484 - B158DRAFT_0518 0.73 +0.2
529,484 - B158DRAFT_0518 0.73 +0.1
529,498 + B158DRAFT_0518 0.74 -0.4
529,498 + B158DRAFT_0518 0.74 -0.5
529,507 + B158DRAFT_0518 0.75 +0.5
529,507 + B158DRAFT_0518 0.75 -0.3
529,515 - B158DRAFT_0518 0.76 -0.1
529,650 + B158DRAFT_0518 0.86 -0.2
529,658 - B158DRAFT_0518 0.87 +0.0
529,701 + -0.1
529,701 + -0.2
529,701 + -0.1
529,701 + +0.0
529,704 - +0.6
529,709 - +0.2
529,709 - -0.4
529,709 - -0.4
529,709 - -0.4
529,709 - -0.3
529,709 - +0.3
529,716 + -0.8
529,716 + -0.5
529,716 + +0.1
529,716 + +0.2
529,724 - +0.4
529,724 - -0.3
529,813 - -0.0
530,242 + -0.1
530,413 + -0.5
530,442 + +0.4
530,442 + +0.4
530,447 + +0.6
530,447 + +1.3
530,447 + +1.0
530,447 + +0.7
530,447 + +0.4
530,450 - -0.5
530,450 - +0.8
530,450 - +0.1
530,452 + +0.0
530,455 - +0.2
530,455 - +0.2
530,498 + +0.6
530,501 - +0.2
530,576 + B158DRAFT_0520 0.10 -0.1
530,576 + B158DRAFT_0520 0.10 -0.0
530,576 + B158DRAFT_0520 0.10 +0.4
530,584 - B158DRAFT_0520 0.11 +0.3
530,661 + B158DRAFT_0520 0.14 +0.5
530,661 + B158DRAFT_0520 0.14 +0.2
530,661 + B158DRAFT_0520 0.14 +0.4
530,661 + B158DRAFT_0520 0.14 -0.2
530,661 + B158DRAFT_0520 0.14 +0.7
530,669 - B158DRAFT_0520 0.15 +0.5
530,669 - B158DRAFT_0520 0.15 -0.2
530,669 - B158DRAFT_0520 0.15 +0.2
530,669 - B158DRAFT_0520 0.15 +0.6
530,669 - B158DRAFT_0520 0.15 +0.5
530,669 - B158DRAFT_0520 0.15 +0.6
530,669 - B158DRAFT_0520 0.15 -0.1
530,706 - B158DRAFT_0520 0.17 +0.6
530,805 + B158DRAFT_0520 0.22 +0.3
530,810 + B158DRAFT_0520 0.22 -0.2
530,810 + B158DRAFT_0520 0.22 +0.3
530,818 - B158DRAFT_0520 0.22 +0.5
530,818 - B158DRAFT_0520 0.22 -0.0
530,820 - B158DRAFT_0520 0.22 +0.4
530,822 + B158DRAFT_0520 0.23 +0.3
530,822 + B158DRAFT_0520 0.23 +0.2
530,822 + B158DRAFT_0520 0.23 +0.1
530,822 + B158DRAFT_0520 0.23 +0.8
530,822 + B158DRAFT_0520 0.23 +0.3
530,822 + B158DRAFT_0520 0.23 +0.4

Or see this region's nucleotide sequence