Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0259

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0258 and B158DRAFT_0259 are separated by 9 nucleotidesB158DRAFT_0259 and B158DRAFT_0260 are separated by 26 nucleotidesB158DRAFT_0260 and B158DRAFT_0261 are separated by 58 nucleotides B158DRAFT_0258: B158DRAFT_0258 - transporter, NhaC family (TC 2.A.35), at 263,246 to 264,598 _0258 B158DRAFT_0259: B158DRAFT_0259 - shikimate 5-dehydrogenase, at 264,608 to 265,402 _0259 B158DRAFT_0260: B158DRAFT_0260 - Putative protein-S-isoprenylcysteine methyltransferase, at 265,429 to 265,890 _0260 B158DRAFT_0261: B158DRAFT_0261 - catalase/peroxidase HPI, at 265,949 to 268,180 _0261 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1at 263.784 kb on - strand, within B158DRAFT_0258at 263.819 kb on - strand, within B158DRAFT_0258at 263.848 kb on + strand, within B158DRAFT_0258at 263.848 kb on + strand, within B158DRAFT_0258at 263.856 kb on - strand, within B158DRAFT_0258at 263.880 kb on - strand, within B158DRAFT_0258at 264.164 kb on + strand, within B158DRAFT_0258at 264.164 kb on + strand, within B158DRAFT_0258at 264.172 kb on - strand, within B158DRAFT_0258at 264.172 kb on - strand, within B158DRAFT_0258at 264.188 kb on - strand, within B158DRAFT_0258at 264.200 kb on + strand, within B158DRAFT_0258at 264.284 kb on - strand, within B158DRAFT_0258at 264.284 kb on - strand, within B158DRAFT_0258at 264.345 kb on + strand, within B158DRAFT_0258at 264.430 kb on - strand, within B158DRAFT_0258at 264.517 kb on + strandat 264.534 kb on + strandat 264.569 kb on - strandat 264.650 kb on - strandat 264.661 kb on + strandat 264.747 kb on - strand, within B158DRAFT_0259at 264.804 kb on + strand, within B158DRAFT_0259at 264.812 kb on - strand, within B158DRAFT_0259at 264.838 kb on - strand, within B158DRAFT_0259at 264.844 kb on - strand, within B158DRAFT_0259at 264.852 kb on - strand, within B158DRAFT_0259at 264.855 kb on + strand, within B158DRAFT_0259at 264.863 kb on - strand, within B158DRAFT_0259at 264.863 kb on - strand, within B158DRAFT_0259at 264.894 kb on - strand, within B158DRAFT_0259at 264.939 kb on + strand, within B158DRAFT_0259at 264.947 kb on - strand, within B158DRAFT_0259at 264.956 kb on + strand, within B158DRAFT_0259at 264.998 kb on + strand, within B158DRAFT_0259at 264.998 kb on + strand, within B158DRAFT_0259at 264.998 kb on + strand, within B158DRAFT_0259at 264.998 kb on + strand, within B158DRAFT_0259at 264.998 kb on + strand, within B158DRAFT_0259at 264.998 kb on + strand, within B158DRAFT_0259at 264.998 kb on + strand, within B158DRAFT_0259at 264.998 kb on + strand, within B158DRAFT_0259at 265.006 kb on - strand, within B158DRAFT_0259at 265.006 kb on - strand, within B158DRAFT_0259at 265.006 kb on - strand, within B158DRAFT_0259at 265.006 kb on - strand, within B158DRAFT_0259at 265.017 kb on + strand, within B158DRAFT_0259at 265.034 kb on + strand, within B158DRAFT_0259at 265.056 kb on + strand, within B158DRAFT_0259at 265.056 kb on + strand, within B158DRAFT_0259at 265.064 kb on - strand, within B158DRAFT_0259at 265.064 kb on - strand, within B158DRAFT_0259at 265.064 kb on - strand, within B158DRAFT_0259at 265.064 kb on - strand, within B158DRAFT_0259at 265.080 kb on - strand, within B158DRAFT_0259at 265.291 kb on + strand, within B158DRAFT_0259at 265.299 kb on - strand, within B158DRAFT_0259at 265.316 kb on + strand, within B158DRAFT_0259at 265.350 kb on + strandat 265.351 kb on - strandat 265.358 kb on - strandat 265.493 kb on + strand, within B158DRAFT_0260at 265.501 kb on - strand, within B158DRAFT_0260at 265.521 kb on + strand, within B158DRAFT_0260at 265.576 kb on - strand, within B158DRAFT_0260at 265.623 kb on - strand, within B158DRAFT_0260at 265.832 kb on - strand, within B158DRAFT_0260at 265.839 kb on + strand, within B158DRAFT_0260at 266.044 kb on + strandat 266.129 kb on + strandat 266.129 kb on + strandat 266.129 kb on + strandat 266.129 kb on + strandat 266.129 kb on + strandat 266.129 kb on + strandat 266.129 kb on + strandat 266.129 kb on + strandat 266.129 kb on + strandat 266.129 kb on + strandat 266.136 kb on + strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.137 kb on - strandat 266.144 kb on - strandat 266.213 kb on + strand, within B158DRAFT_0261at 266.221 kb on - strand, within B158DRAFT_0261at 266.228 kb on - strand, within B158DRAFT_0261at 266.228 kb on - strand, within B158DRAFT_0261at 266.228 kb on - strand, within B158DRAFT_0261at 266.248 kb on + strand, within B158DRAFT_0261at 266.256 kb on - strand, within B158DRAFT_0261at 266.264 kb on + strand, within B158DRAFT_0261at 266.264 kb on + strand, within B158DRAFT_0261at 266.269 kb on + strand, within B158DRAFT_0261at 266.320 kb on + strand, within B158DRAFT_0261at 266.320 kb on + strand, within B158DRAFT_0261at 266.320 kb on + strand, within B158DRAFT_0261at 266.320 kb on + strand, within B158DRAFT_0261at 266.320 kb on + strand, within B158DRAFT_0261at 266.320 kb on + strand, within B158DRAFT_0261at 266.320 kb on + strand, within B158DRAFT_0261at 266.320 kb on + strand, within B158DRAFT_0261at 266.328 kb on + strand, within B158DRAFT_0261at 266.328 kb on - strand, within B158DRAFT_0261at 266.328 kb on - strand, within B158DRAFT_0261at 266.328 kb on - strand, within B158DRAFT_0261at 266.328 kb on - strand, within B158DRAFT_0261at 266.328 kb on - strand, within B158DRAFT_0261at 266.351 kb on - strand, within B158DRAFT_0261at 266.351 kb on - strand, within B158DRAFT_0261at 266.351 kb on - strand, within B158DRAFT_0261

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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263,784 - B158DRAFT_0258 0.40 -0.7
263,819 - B158DRAFT_0258 0.42 -2.0
263,848 + B158DRAFT_0258 0.44 +0.0
263,848 + B158DRAFT_0258 0.44 -0.4
263,856 - B158DRAFT_0258 0.45 -1.4
263,880 - B158DRAFT_0258 0.47 -1.9
264,164 + B158DRAFT_0258 0.68 -0.6
264,164 + B158DRAFT_0258 0.68 -0.7
264,172 - B158DRAFT_0258 0.68 -1.9
264,172 - B158DRAFT_0258 0.68 -1.5
264,188 - B158DRAFT_0258 0.70 -1.9
264,200 + B158DRAFT_0258 0.71 -0.7
264,284 - B158DRAFT_0258 0.77 -1.3
264,284 - B158DRAFT_0258 0.77 -1.2
264,345 + B158DRAFT_0258 0.81 -0.5
264,430 - B158DRAFT_0258 0.88 -2.7
264,517 + -1.7
264,534 + -0.7
264,569 - -0.1
264,650 - -1.3
264,661 + -2.6
264,747 - B158DRAFT_0259 0.17 -2.2
264,804 + B158DRAFT_0259 0.25 -1.6
264,812 - B158DRAFT_0259 0.26 -2.1
264,838 - B158DRAFT_0259 0.29 -2.9
264,844 - B158DRAFT_0259 0.30 -1.1
264,852 - B158DRAFT_0259 0.31 -1.3
264,855 + B158DRAFT_0259 0.31 -1.0
264,863 - B158DRAFT_0259 0.32 -2.2
264,863 - B158DRAFT_0259 0.32 -0.1
264,894 - B158DRAFT_0259 0.36 -1.9
264,939 + B158DRAFT_0259 0.42 -0.8
264,947 - B158DRAFT_0259 0.43 -1.7
264,956 + B158DRAFT_0259 0.44 -1.6
264,998 + B158DRAFT_0259 0.49 -2.2
264,998 + B158DRAFT_0259 0.49 -0.7
264,998 + B158DRAFT_0259 0.49 -2.4
264,998 + B158DRAFT_0259 0.49 -1.9
264,998 + B158DRAFT_0259 0.49 -2.3
264,998 + B158DRAFT_0259 0.49 -1.7
264,998 + B158DRAFT_0259 0.49 -2.9
264,998 + B158DRAFT_0259 0.49 -2.2
265,006 - B158DRAFT_0259 0.50 -1.9
265,006 - B158DRAFT_0259 0.50 -2.0
265,006 - B158DRAFT_0259 0.50 -1.7
265,006 - B158DRAFT_0259 0.50 -2.4
265,017 + B158DRAFT_0259 0.51 -2.5
265,034 + B158DRAFT_0259 0.54 -1.4
265,056 + B158DRAFT_0259 0.56 -2.8
265,056 + B158DRAFT_0259 0.56 -0.8
265,064 - B158DRAFT_0259 0.57 -0.7
265,064 - B158DRAFT_0259 0.57 -0.6
265,064 - B158DRAFT_0259 0.57 -1.8
265,064 - B158DRAFT_0259 0.57 -1.3
265,080 - B158DRAFT_0259 0.59 -1.2
265,291 + B158DRAFT_0259 0.86 -2.4
265,299 - B158DRAFT_0259 0.87 -2.1
265,316 + B158DRAFT_0259 0.89 -2.2
265,350 + -0.6
265,351 - -0.6
265,358 - -0.8
265,493 + B158DRAFT_0260 0.14 +0.2
265,501 - B158DRAFT_0260 0.16 -0.3
265,521 + B158DRAFT_0260 0.20 -0.7
265,576 - B158DRAFT_0260 0.32 -0.4
265,623 - B158DRAFT_0260 0.42 -0.5
265,832 - B158DRAFT_0260 0.87 +0.2
265,839 + B158DRAFT_0260 0.89 +0.8
266,044 + +0.6
266,129 + -0.4
266,129 + -0.5
266,129 + +0.1
266,129 + -0.6
266,129 + -0.6
266,129 + -0.4
266,129 + +0.1
266,129 + -0.1
266,129 + -0.0
266,129 + +0.1
266,136 + -0.5
266,137 - -0.6
266,137 - -0.4
266,137 - -0.2
266,137 - -0.2
266,137 - -0.1
266,137 - -1.3
266,137 - -0.1
266,137 - +0.0
266,137 - +0.3
266,137 - +0.2
266,137 - +0.2
266,144 - -0.0
266,213 + B158DRAFT_0261 0.12 -0.3
266,221 - B158DRAFT_0261 0.12 +0.6
266,228 - B158DRAFT_0261 0.12 -0.1
266,228 - B158DRAFT_0261 0.12 -0.9
266,228 - B158DRAFT_0261 0.12 -0.2
266,248 + B158DRAFT_0261 0.13 -0.1
266,256 - B158DRAFT_0261 0.14 -0.5
266,264 + B158DRAFT_0261 0.14 -0.0
266,264 + B158DRAFT_0261 0.14 -0.1
266,269 + B158DRAFT_0261 0.14 +0.1
266,320 + B158DRAFT_0261 0.17 -0.4
266,320 + B158DRAFT_0261 0.17 +0.3
266,320 + B158DRAFT_0261 0.17 -0.1
266,320 + B158DRAFT_0261 0.17 +0.7
266,320 + B158DRAFT_0261 0.17 -0.4
266,320 + B158DRAFT_0261 0.17 -0.2
266,320 + B158DRAFT_0261 0.17 -0.2
266,320 + B158DRAFT_0261 0.17 +0.2
266,328 + B158DRAFT_0261 0.17 -0.3
266,328 - B158DRAFT_0261 0.17 -0.3
266,328 - B158DRAFT_0261 0.17 -0.6
266,328 - B158DRAFT_0261 0.17 -1.1
266,328 - B158DRAFT_0261 0.17 +0.0
266,328 - B158DRAFT_0261 0.17 -0.1
266,351 - B158DRAFT_0261 0.18 +0.2
266,351 - B158DRAFT_0261 0.18 -0.4
266,351 - B158DRAFT_0261 0.18 +1.0

Or see this region's nucleotide sequence