Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0879

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0877 and B158DRAFT_0878 are separated by 62 nucleotidesB158DRAFT_0878 and B158DRAFT_0879 are separated by 87 nucleotidesB158DRAFT_0879 and B158DRAFT_0880 are separated by 2 nucleotidesB158DRAFT_0880 and B158DRAFT_0881 are separated by 152 nucleotides B158DRAFT_0877: B158DRAFT_0877 - DNA replication and repair protein RadA, at 892,411 to 893,778 _0877 B158DRAFT_0878: B158DRAFT_0878 - Protein of unknown function (DUF3365)., at 893,841 to 894,422 _0878 B158DRAFT_0879: B158DRAFT_0879 - Predicted S-adenosylmethionine-dependent methyltransferase, at 894,510 to 895,133 _0879 B158DRAFT_0880: B158DRAFT_0880 - PilZ domain., at 895,136 to 895,528 _0880 B158DRAFT_0881: B158DRAFT_0881 - ATP-binding cassette protein, ChvD family, at 895,681 to 897,348 _0881 Position (kb) 894 895 896Strain fitness (log2 ratio) -1 0 1at 893.538 kb on + strand, within B158DRAFT_0877at 893.601 kb on + strand, within B158DRAFT_0877at 893.601 kb on + strand, within B158DRAFT_0877at 893.601 kb on + strand, within B158DRAFT_0877at 893.601 kb on + strand, within B158DRAFT_0877at 893.622 kb on - strand, within B158DRAFT_0877at 893.631 kb on + strand, within B158DRAFT_0877at 893.638 kb on + strand, within B158DRAFT_0877at 893.638 kb on + strand, within B158DRAFT_0877at 893.638 kb on + strand, within B158DRAFT_0877at 893.639 kb on - strand, within B158DRAFT_0877at 893.646 kb on - strandat 893.646 kb on - strandat 893.692 kb on + strandat 893.707 kb on + strandat 893.707 kb on + strandat 893.734 kb on - strandat 893.734 kb on - strandat 893.735 kb on + strandat 893.748 kb on - strandat 893.754 kb on - strandat 893.755 kb on - strandat 893.817 kb on - strandat 893.896 kb on - strandat 893.986 kb on + strand, within B158DRAFT_0878at 893.996 kb on + strand, within B158DRAFT_0878at 894.006 kb on - strand, within B158DRAFT_0878at 894.080 kb on + strand, within B158DRAFT_0878at 894.133 kb on + strand, within B158DRAFT_0878at 894.135 kb on + strand, within B158DRAFT_0878at 894.141 kb on - strand, within B158DRAFT_0878at 894.172 kb on - strand, within B158DRAFT_0878at 894.175 kb on + strand, within B158DRAFT_0878at 894.183 kb on - strand, within B158DRAFT_0878at 894.211 kb on - strand, within B158DRAFT_0878at 894.253 kb on - strand, within B158DRAFT_0878at 894.261 kb on - strand, within B158DRAFT_0878at 894.287 kb on + strand, within B158DRAFT_0878at 894.287 kb on + strand, within B158DRAFT_0878at 894.287 kb on + strand, within B158DRAFT_0878at 894.295 kb on - strand, within B158DRAFT_0878at 894.295 kb on - strand, within B158DRAFT_0878at 894.295 kb on - strand, within B158DRAFT_0878at 894.295 kb on - strand, within B158DRAFT_0878at 894.343 kb on + strand, within B158DRAFT_0878at 894.351 kb on - strand, within B158DRAFT_0878at 894.351 kb on - strand, within B158DRAFT_0878at 894.351 kb on - strand, within B158DRAFT_0878at 894.351 kb on - strand, within B158DRAFT_0878at 894.369 kb on - strandat 894.371 kb on - strandat 894.376 kb on - strandat 894.387 kb on + strandat 894.405 kb on + strandat 894.450 kb on + strandat 894.458 kb on - strandat 894.458 kb on - strandat 894.507 kb on + strandat 894.515 kb on - strandat 894.523 kb on + strandat 894.524 kb on + strandat 894.532 kb on - strandat 894.576 kb on - strand, within B158DRAFT_0879at 894.628 kb on - strand, within B158DRAFT_0879at 894.638 kb on - strand, within B158DRAFT_0879at 894.655 kb on - strand, within B158DRAFT_0879at 894.662 kb on + strand, within B158DRAFT_0879at 894.685 kb on + strand, within B158DRAFT_0879at 894.758 kb on - strand, within B158DRAFT_0879at 894.777 kb on + strand, within B158DRAFT_0879at 894.780 kb on - strand, within B158DRAFT_0879at 894.910 kb on - strand, within B158DRAFT_0879at 894.943 kb on + strand, within B158DRAFT_0879at 894.951 kb on - strand, within B158DRAFT_0879at 894.954 kb on + strand, within B158DRAFT_0879at 894.970 kb on - strand, within B158DRAFT_0879at 894.996 kb on - strand, within B158DRAFT_0879at 895.056 kb on + strand, within B158DRAFT_0879at 895.082 kb on + strandat 895.205 kb on - strand, within B158DRAFT_0880at 895.239 kb on + strand, within B158DRAFT_0880at 895.457 kb on - strand, within B158DRAFT_0880at 895.459 kb on - strand, within B158DRAFT_0880at 895.586 kb on - strandat 895.622 kb on + strandat 895.623 kb on - strandat 895.630 kb on - strandat 895.663 kb on - strandat 895.701 kb on + strandat 895.784 kb on - strandat 895.790 kb on + strandat 895.798 kb on - strandat 895.834 kb on + strandat 895.863 kb on + strand, within B158DRAFT_0881at 895.871 kb on - strand, within B158DRAFT_0881at 895.871 kb on - strand, within B158DRAFT_0881at 895.871 kb on - strand, within B158DRAFT_0881at 895.871 kb on - strand, within B158DRAFT_0881at 895.890 kb on - strand, within B158DRAFT_0881at 895.994 kb on + strand, within B158DRAFT_0881at 895.994 kb on + strand, within B158DRAFT_0881at 896.002 kb on - strand, within B158DRAFT_0881at 896.002 kb on - strand, within B158DRAFT_0881at 896.002 kb on - strand, within B158DRAFT_0881at 896.002 kb on - strand, within B158DRAFT_0881at 896.027 kb on + strand, within B158DRAFT_0881at 896.082 kb on + strand, within B158DRAFT_0881at 896.110 kb on + strand, within B158DRAFT_0881

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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893,538 + B158DRAFT_0877 0.82 +0.4
893,601 + B158DRAFT_0877 0.87 +0.6
893,601 + B158DRAFT_0877 0.87 -0.2
893,601 + B158DRAFT_0877 0.87 +0.1
893,601 + B158DRAFT_0877 0.87 -0.7
893,622 - B158DRAFT_0877 0.89 +0.0
893,631 + B158DRAFT_0877 0.89 +0.7
893,638 + B158DRAFT_0877 0.90 -1.4
893,638 + B158DRAFT_0877 0.90 -0.4
893,638 + B158DRAFT_0877 0.90 +0.3
893,639 - B158DRAFT_0877 0.90 -0.3
893,646 - +0.0
893,646 - +0.3
893,692 + -0.1
893,707 + -0.4
893,707 + -0.6
893,734 - +0.0
893,734 - +0.5
893,735 + -0.1
893,748 - +0.2
893,754 - -0.3
893,755 - -0.1
893,817 - -0.4
893,896 - -1.1
893,986 + B158DRAFT_0878 0.25 +0.4
893,996 + B158DRAFT_0878 0.27 +0.2
894,006 - B158DRAFT_0878 0.28 -0.1
894,080 + B158DRAFT_0878 0.41 -0.3
894,133 + B158DRAFT_0878 0.50 -0.7
894,135 + B158DRAFT_0878 0.51 -0.3
894,141 - B158DRAFT_0878 0.52 -0.7
894,172 - B158DRAFT_0878 0.57 -0.4
894,175 + B158DRAFT_0878 0.57 -0.1
894,183 - B158DRAFT_0878 0.59 -0.3
894,211 - B158DRAFT_0878 0.64 -0.5
894,253 - B158DRAFT_0878 0.71 +0.4
894,261 - B158DRAFT_0878 0.72 +0.4
894,287 + B158DRAFT_0878 0.77 -0.4
894,287 + B158DRAFT_0878 0.77 +0.4
894,287 + B158DRAFT_0878 0.77 -0.2
894,295 - B158DRAFT_0878 0.78 -0.8
894,295 - B158DRAFT_0878 0.78 -0.4
894,295 - B158DRAFT_0878 0.78 +0.9
894,295 - B158DRAFT_0878 0.78 -0.4
894,343 + B158DRAFT_0878 0.86 -0.0
894,351 - B158DRAFT_0878 0.88 -0.0
894,351 - B158DRAFT_0878 0.88 +0.1
894,351 - B158DRAFT_0878 0.88 -1.2
894,351 - B158DRAFT_0878 0.88 -0.2
894,369 - -0.2
894,371 - +0.3
894,376 - -0.8
894,387 + +0.0
894,405 + -0.5
894,450 + +0.2
894,458 - +0.6
894,458 - +0.1
894,507 + +0.4
894,515 - -1.1
894,523 + -0.1
894,524 + +0.4
894,532 - -0.0
894,576 - B158DRAFT_0879 0.11 -0.2
894,628 - B158DRAFT_0879 0.19 -0.3
894,638 - B158DRAFT_0879 0.21 -0.1
894,655 - B158DRAFT_0879 0.23 -0.4
894,662 + B158DRAFT_0879 0.24 -0.1
894,685 + B158DRAFT_0879 0.28 +0.0
894,758 - B158DRAFT_0879 0.40 +0.0
894,777 + B158DRAFT_0879 0.43 +0.0
894,780 - B158DRAFT_0879 0.43 +0.3
894,910 - B158DRAFT_0879 0.64 -0.4
894,943 + B158DRAFT_0879 0.69 +0.3
894,951 - B158DRAFT_0879 0.71 -1.7
894,954 + B158DRAFT_0879 0.71 +0.7
894,970 - B158DRAFT_0879 0.74 -0.3
894,996 - B158DRAFT_0879 0.78 -1.3
895,056 + B158DRAFT_0879 0.88 -0.3
895,082 + -0.5
895,205 - B158DRAFT_0880 0.18 -1.1
895,239 + B158DRAFT_0880 0.26 -0.4
895,457 - B158DRAFT_0880 0.82 -1.0
895,459 - B158DRAFT_0880 0.82 +0.3
895,586 - +0.3
895,622 + +0.1
895,623 - -0.4
895,630 - -0.2
895,663 - -0.1
895,701 + +0.5
895,784 - -0.4
895,790 + +0.2
895,798 - +1.1
895,834 + +0.7
895,863 + B158DRAFT_0881 0.11 -0.4
895,871 - B158DRAFT_0881 0.11 +0.3
895,871 - B158DRAFT_0881 0.11 -0.4
895,871 - B158DRAFT_0881 0.11 +0.3
895,871 - B158DRAFT_0881 0.11 +0.1
895,890 - B158DRAFT_0881 0.13 -0.4
895,994 + B158DRAFT_0881 0.19 +0.4
895,994 + B158DRAFT_0881 0.19 -0.1
896,002 - B158DRAFT_0881 0.19 +0.7
896,002 - B158DRAFT_0881 0.19 -0.3
896,002 - B158DRAFT_0881 0.19 +0.4
896,002 - B158DRAFT_0881 0.19 -0.0
896,027 + B158DRAFT_0881 0.21 -0.4
896,082 + B158DRAFT_0881 0.24 -0.5
896,110 + B158DRAFT_0881 0.26 -0.1

Or see this region's nucleotide sequence