Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2433

Experiment: m.b. Nickel (II) chloride 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2432 and B158DRAFT_2433 are separated by 15 nucleotidesB158DRAFT_2433 and B158DRAFT_2434 are separated by 30 nucleotidesB158DRAFT_2434 and B158DRAFT_2435 are separated by 22 nucleotides B158DRAFT_2432: B158DRAFT_2432 - 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19), at 604,782 to 606,086 _2432 B158DRAFT_2433: B158DRAFT_2433 - chorismate synthase (EC 4.2.3.5), at 606,102 to 607,199 _2433 B158DRAFT_2434: B158DRAFT_2434 - Predicted membrane protein (DUF2069)., at 607,230 to 607,643 _2434 B158DRAFT_2435: B158DRAFT_2435 - NAD(P)H:quinone oxidoreductase, type IV, at 607,666 to 608,265 _2435 Position (kb) 606 607 608Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 605.107 kb on - strand, within B158DRAFT_2432at 605.107 kb on - strand, within B158DRAFT_2432at 605.138 kb on - strand, within B158DRAFT_2432at 605.142 kb on + strand, within B158DRAFT_2432at 605.142 kb on + strand, within B158DRAFT_2432at 605.150 kb on - strand, within B158DRAFT_2432at 605.460 kb on + strand, within B158DRAFT_2432at 605.689 kb on + strand, within B158DRAFT_2432at 605.713 kb on - strand, within B158DRAFT_2432at 605.732 kb on - strand, within B158DRAFT_2432at 605.851 kb on - strand, within B158DRAFT_2432at 605.910 kb on + strand, within B158DRAFT_2432at 605.923 kb on - strand, within B158DRAFT_2432at 606.037 kb on + strandat 606.059 kb on - strandat 606.123 kb on + strandat 606.167 kb on - strandat 606.188 kb on - strandat 606.193 kb on - strandat 606.199 kb on + strandat 606.227 kb on - strand, within B158DRAFT_2433at 606.252 kb on + strand, within B158DRAFT_2433at 606.252 kb on + strand, within B158DRAFT_2433at 606.252 kb on + strand, within B158DRAFT_2433at 606.252 kb on + strand, within B158DRAFT_2433at 606.260 kb on - strand, within B158DRAFT_2433at 606.260 kb on - strand, within B158DRAFT_2433at 606.260 kb on - strand, within B158DRAFT_2433at 606.260 kb on - strand, within B158DRAFT_2433at 606.377 kb on - strand, within B158DRAFT_2433at 606.385 kb on + strand, within B158DRAFT_2433at 606.393 kb on - strand, within B158DRAFT_2433at 606.393 kb on - strand, within B158DRAFT_2433at 606.423 kb on + strand, within B158DRAFT_2433at 606.461 kb on + strand, within B158DRAFT_2433at 606.461 kb on + strand, within B158DRAFT_2433at 606.469 kb on - strand, within B158DRAFT_2433at 606.469 kb on - strand, within B158DRAFT_2433at 606.471 kb on + strand, within B158DRAFT_2433at 606.478 kb on + strand, within B158DRAFT_2433at 606.491 kb on - strand, within B158DRAFT_2433at 606.542 kb on + strand, within B158DRAFT_2433at 606.592 kb on + strand, within B158DRAFT_2433at 606.607 kb on - strand, within B158DRAFT_2433at 606.633 kb on + strand, within B158DRAFT_2433at 606.652 kb on + strand, within B158DRAFT_2433at 606.727 kb on + strand, within B158DRAFT_2433at 606.735 kb on - strand, within B158DRAFT_2433at 606.735 kb on - strand, within B158DRAFT_2433at 606.737 kb on + strand, within B158DRAFT_2433at 606.771 kb on - strand, within B158DRAFT_2433at 606.821 kb on + strand, within B158DRAFT_2433at 606.918 kb on - strand, within B158DRAFT_2433at 607.100 kb on + strandat 607.108 kb on - strandat 607.241 kb on - strandat 607.386 kb on + strand, within B158DRAFT_2434at 607.476 kb on + strand, within B158DRAFT_2434at 607.690 kb on + strandat 607.713 kb on + strandat 607.721 kb on - strandat 607.721 kb on - strandat 607.784 kb on + strand, within B158DRAFT_2435at 607.784 kb on + strand, within B158DRAFT_2435at 607.821 kb on - strand, within B158DRAFT_2435at 607.821 kb on - strand, within B158DRAFT_2435at 607.834 kb on + strand, within B158DRAFT_2435at 607.842 kb on - strand, within B158DRAFT_2435at 607.842 kb on - strand, within B158DRAFT_2435at 607.842 kb on - strand, within B158DRAFT_2435at 607.893 kb on - strand, within B158DRAFT_2435at 607.893 kb on - strand, within B158DRAFT_2435at 608.005 kb on + strand, within B158DRAFT_2435at 608.038 kb on + strand, within B158DRAFT_2435at 608.041 kb on - strand, within B158DRAFT_2435at 608.043 kb on + strand, within B158DRAFT_2435at 608.046 kb on - strand, within B158DRAFT_2435at 608.046 kb on - strand, within B158DRAFT_2435at 608.070 kb on + strand, within B158DRAFT_2435at 608.078 kb on - strand, within B158DRAFT_2435at 608.078 kb on - strand, within B158DRAFT_2435at 608.092 kb on + strand, within B158DRAFT_2435at 608.153 kb on + strand, within B158DRAFT_2435at 608.161 kb on - strand, within B158DRAFT_2435at 608.173 kb on + strand, within B158DRAFT_2435at 608.173 kb on - strand, within B158DRAFT_2435at 608.181 kb on - strand, within B158DRAFT_2435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
remove
605,107 - B158DRAFT_2432 0.25 -4.1
605,107 - B158DRAFT_2432 0.25 -2.4
605,138 - B158DRAFT_2432 0.27 -1.0
605,142 + B158DRAFT_2432 0.28 -1.5
605,142 + B158DRAFT_2432 0.28 -1.3
605,150 - B158DRAFT_2432 0.28 -1.9
605,460 + B158DRAFT_2432 0.52 -1.5
605,689 + B158DRAFT_2432 0.70 -1.9
605,713 - B158DRAFT_2432 0.71 -0.2
605,732 - B158DRAFT_2432 0.73 -2.1
605,851 - B158DRAFT_2432 0.82 -1.9
605,910 + B158DRAFT_2432 0.86 -1.4
605,923 - B158DRAFT_2432 0.87 -1.4
606,037 + -0.8
606,059 - +0.1
606,123 + -1.1
606,167 - -1.8
606,188 - -1.1
606,193 - -1.9
606,199 + +0.1
606,227 - B158DRAFT_2433 0.11 -1.4
606,252 + B158DRAFT_2433 0.14 -1.1
606,252 + B158DRAFT_2433 0.14 -1.5
606,252 + B158DRAFT_2433 0.14 -3.7
606,252 + B158DRAFT_2433 0.14 -2.1
606,260 - B158DRAFT_2433 0.14 -1.9
606,260 - B158DRAFT_2433 0.14 -1.0
606,260 - B158DRAFT_2433 0.14 -1.0
606,260 - B158DRAFT_2433 0.14 -1.7
606,377 - B158DRAFT_2433 0.25 -1.1
606,385 + B158DRAFT_2433 0.26 -1.3
606,393 - B158DRAFT_2433 0.27 -0.6
606,393 - B158DRAFT_2433 0.27 -1.8
606,423 + B158DRAFT_2433 0.29 -0.9
606,461 + B158DRAFT_2433 0.33 -1.8
606,461 + B158DRAFT_2433 0.33 -2.2
606,469 - B158DRAFT_2433 0.33 -1.7
606,469 - B158DRAFT_2433 0.33 -1.8
606,471 + B158DRAFT_2433 0.34 -1.8
606,478 + B158DRAFT_2433 0.34 -1.2
606,491 - B158DRAFT_2433 0.35 -1.4
606,542 + B158DRAFT_2433 0.40 -1.3
606,592 + B158DRAFT_2433 0.45 -1.3
606,607 - B158DRAFT_2433 0.46 -1.6
606,633 + B158DRAFT_2433 0.48 -1.7
606,652 + B158DRAFT_2433 0.50 -1.9
606,727 + B158DRAFT_2433 0.57 -1.0
606,735 - B158DRAFT_2433 0.58 -1.7
606,735 - B158DRAFT_2433 0.58 -1.3
606,737 + B158DRAFT_2433 0.58 -3.4
606,771 - B158DRAFT_2433 0.61 -1.7
606,821 + B158DRAFT_2433 0.65 -0.6
606,918 - B158DRAFT_2433 0.74 -1.6
607,100 + -1.2
607,108 - -1.2
607,241 - +0.4
607,386 + B158DRAFT_2434 0.38 +0.6
607,476 + B158DRAFT_2434 0.59 +0.4
607,690 + -0.5
607,713 + -0.5
607,721 - -0.5
607,721 - -0.2
607,784 + B158DRAFT_2435 0.20 +0.6
607,784 + B158DRAFT_2435 0.20 +0.3
607,821 - B158DRAFT_2435 0.26 -0.3
607,821 - B158DRAFT_2435 0.26 -1.2
607,834 + B158DRAFT_2435 0.28 -0.9
607,842 - B158DRAFT_2435 0.29 +0.4
607,842 - B158DRAFT_2435 0.29 +0.4
607,842 - B158DRAFT_2435 0.29 +0.1
607,893 - B158DRAFT_2435 0.38 -0.3
607,893 - B158DRAFT_2435 0.38 -0.2
608,005 + B158DRAFT_2435 0.56 +0.0
608,038 + B158DRAFT_2435 0.62 -0.1
608,041 - B158DRAFT_2435 0.62 -0.3
608,043 + B158DRAFT_2435 0.63 -0.1
608,046 - B158DRAFT_2435 0.63 -1.6
608,046 - B158DRAFT_2435 0.63 -0.3
608,070 + B158DRAFT_2435 0.67 -0.1
608,078 - B158DRAFT_2435 0.69 -1.0
608,078 - B158DRAFT_2435 0.69 -0.5
608,092 + B158DRAFT_2435 0.71 -0.0
608,153 + B158DRAFT_2435 0.81 -1.0
608,161 - B158DRAFT_2435 0.82 -0.4
608,173 + B158DRAFT_2435 0.84 -0.1
608,173 - B158DRAFT_2435 0.84 -0.8
608,181 - B158DRAFT_2435 0.86 -0.9

Or see this region's nucleotide sequence