Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2242

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2241 and B158DRAFT_2242 are separated by 142 nucleotidesB158DRAFT_2242 and B158DRAFT_2243 are separated by 52 nucleotides B158DRAFT_2241: B158DRAFT_2241 - Outer membrane cobalamin receptor protein, at 398,245 to 401,133 _2241 B158DRAFT_2242: B158DRAFT_2242 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 401,276 to 403,039 _2242 B158DRAFT_2243: B158DRAFT_2243 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 403,092 to 404,609 _2243 Position (kb) 401 402 403 404Strain fitness (log2 ratio) -2 -1 0 1 2at 400.366 kb on - strand, within B158DRAFT_2241at 400.387 kb on + strand, within B158DRAFT_2241at 400.406 kb on + strand, within B158DRAFT_2241at 400.414 kb on - strand, within B158DRAFT_2241at 400.421 kb on - strand, within B158DRAFT_2241at 400.547 kb on + strand, within B158DRAFT_2241at 400.566 kb on - strand, within B158DRAFT_2241at 400.621 kb on - strand, within B158DRAFT_2241at 400.703 kb on - strand, within B158DRAFT_2241at 400.713 kb on - strand, within B158DRAFT_2241at 400.777 kb on + strand, within B158DRAFT_2241at 400.777 kb on + strand, within B158DRAFT_2241at 400.777 kb on + strand, within B158DRAFT_2241at 400.777 kb on + strand, within B158DRAFT_2241at 400.777 kb on + strand, within B158DRAFT_2241at 400.785 kb on - strand, within B158DRAFT_2241at 400.785 kb on - strand, within B158DRAFT_2241at 400.785 kb on - strand, within B158DRAFT_2241at 400.794 kb on + strand, within B158DRAFT_2241at 400.794 kb on + strand, within B158DRAFT_2241at 400.802 kb on - strand, within B158DRAFT_2241at 400.830 kb on + strand, within B158DRAFT_2241at 400.830 kb on + strand, within B158DRAFT_2241at 400.838 kb on - strand, within B158DRAFT_2241at 400.866 kb on - strandat 400.866 kb on - strandat 400.874 kb on - strandat 400.901 kb on + strandat 400.909 kb on - strandat 400.990 kb on + strandat 401.052 kb on - strandat 401.072 kb on - strandat 401.074 kb on - strandat 401.080 kb on + strandat 401.088 kb on - strandat 401.095 kb on - strandat 401.234 kb on + strandat 401.242 kb on - strandat 401.293 kb on - strandat 401.334 kb on + strandat 401.466 kb on + strand, within B158DRAFT_2242at 401.503 kb on - strand, within B158DRAFT_2242at 401.540 kb on + strandat 401.540 kb on + strand, within B158DRAFT_2242at 401.635 kb on + strand, within B158DRAFT_2242at 401.635 kb on + strand, within B158DRAFT_2242at 401.643 kb on - strand, within B158DRAFT_2242at 401.648 kb on + strand, within B158DRAFT_2242at 401.648 kb on - strand, within B158DRAFT_2242at 401.661 kb on - strand, within B158DRAFT_2242at 401.661 kb on - strand, within B158DRAFT_2242at 401.667 kb on + strand, within B158DRAFT_2242at 401.700 kb on - strand, within B158DRAFT_2242at 401.707 kb on + strand, within B158DRAFT_2242at 401.707 kb on + strand, within B158DRAFT_2242at 401.707 kb on + strand, within B158DRAFT_2242at 401.715 kb on - strand, within B158DRAFT_2242at 401.741 kb on - strand, within B158DRAFT_2242at 401.771 kb on - strand, within B158DRAFT_2242at 401.781 kb on + strand, within B158DRAFT_2242at 401.789 kb on - strand, within B158DRAFT_2242at 401.805 kb on - strand, within B158DRAFT_2242at 401.840 kb on - strand, within B158DRAFT_2242at 401.841 kb on + strand, within B158DRAFT_2242at 401.849 kb on - strand, within B158DRAFT_2242at 401.849 kb on - strand, within B158DRAFT_2242at 401.884 kb on - strand, within B158DRAFT_2242at 401.915 kb on - strand, within B158DRAFT_2242at 401.959 kb on - strand, within B158DRAFT_2242at 401.984 kb on + strand, within B158DRAFT_2242at 402.029 kb on - strand, within B158DRAFT_2242at 402.065 kb on - strand, within B158DRAFT_2242at 402.076 kb on + strand, within B158DRAFT_2242at 402.076 kb on + strand, within B158DRAFT_2242at 402.094 kb on - strand, within B158DRAFT_2242at 402.230 kb on - strand, within B158DRAFT_2242at 402.300 kb on - strand, within B158DRAFT_2242at 402.321 kb on + strand, within B158DRAFT_2242at 402.328 kb on + strand, within B158DRAFT_2242at 402.329 kb on - strand, within B158DRAFT_2242at 402.339 kb on + strand, within B158DRAFT_2242at 402.339 kb on - strand, within B158DRAFT_2242at 402.339 kb on - strand, within B158DRAFT_2242at 402.347 kb on + strand, within B158DRAFT_2242at 402.347 kb on - strand, within B158DRAFT_2242at 402.347 kb on - strand, within B158DRAFT_2242at 402.357 kb on - strand, within B158DRAFT_2242at 402.365 kb on - strand, within B158DRAFT_2242at 402.378 kb on - strand, within B158DRAFT_2242at 402.463 kb on + strand, within B158DRAFT_2242at 402.463 kb on + strand, within B158DRAFT_2242at 402.470 kb on + strand, within B158DRAFT_2242at 402.471 kb on - strand, within B158DRAFT_2242at 402.538 kb on - strand, within B158DRAFT_2242at 402.546 kb on + strand, within B158DRAFT_2242at 402.551 kb on + strand, within B158DRAFT_2242at 402.559 kb on - strand, within B158DRAFT_2242at 402.559 kb on - strand, within B158DRAFT_2242at 402.559 kb on - strand, within B158DRAFT_2242at 402.605 kb on + strand, within B158DRAFT_2242at 402.617 kb on - strand, within B158DRAFT_2242at 402.721 kb on - strand, within B158DRAFT_2242at 402.930 kb on + strandat 402.930 kb on + strandat 402.938 kb on - strandat 402.938 kb on - strandat 402.941 kb on + strandat 402.986 kb on + strandat 403.007 kb on + strandat 403.022 kb on + strandat 403.056 kb on + strandat 403.145 kb on + strandat 403.175 kb on + strandat 403.184 kb on + strandat 403.191 kb on + strandat 403.199 kb on - strandat 403.199 kb on - strandat 403.222 kb on + strandat 403.222 kb on + strandat 403.224 kb on - strandat 403.232 kb on + strandat 403.240 kb on - strandat 403.240 kb on - strandat 403.246 kb on + strand, within B158DRAFT_2243at 403.254 kb on - strand, within B158DRAFT_2243at 403.254 kb on - strand, within B158DRAFT_2243at 403.282 kb on - strand, within B158DRAFT_2243at 403.339 kb on - strand, within B158DRAFT_2243at 403.408 kb on + strand, within B158DRAFT_2243at 403.416 kb on - strand, within B158DRAFT_2243at 403.433 kb on + strand, within B158DRAFT_2243at 403.452 kb on - strand, within B158DRAFT_2243at 403.481 kb on + strand, within B158DRAFT_2243at 403.481 kb on + strand, within B158DRAFT_2243at 403.481 kb on + strand, within B158DRAFT_2243at 403.489 kb on - strand, within B158DRAFT_2243at 403.489 kb on - strand, within B158DRAFT_2243at 403.505 kb on - strand, within B158DRAFT_2243at 403.612 kb on + strand, within B158DRAFT_2243at 403.619 kb on + strand, within B158DRAFT_2243at 403.620 kb on - strand, within B158DRAFT_2243at 403.628 kb on + strand, within B158DRAFT_2243at 403.628 kb on + strand, within B158DRAFT_2243at 403.636 kb on - strand, within B158DRAFT_2243at 403.689 kb on + strand, within B158DRAFT_2243at 403.689 kb on + strand, within B158DRAFT_2243at 403.697 kb on - strand, within B158DRAFT_2243at 403.713 kb on + strand, within B158DRAFT_2243at 403.721 kb on - strand, within B158DRAFT_2243at 403.721 kb on - strand, within B158DRAFT_2243at 403.848 kb on + strand, within B158DRAFT_2243at 403.918 kb on + strand, within B158DRAFT_2243at 403.929 kb on + strand, within B158DRAFT_2243at 403.930 kb on + strand, within B158DRAFT_2243at 403.937 kb on - strand, within B158DRAFT_2243at 403.937 kb on - strand, within B158DRAFT_2243at 403.937 kb on - strand, within B158DRAFT_2243at 403.943 kb on - strand, within B158DRAFT_2243at 403.943 kb on - strand, within B158DRAFT_2243at 403.956 kb on - strand, within B158DRAFT_2243at 403.976 kb on + strand, within B158DRAFT_2243at 403.984 kb on - strand, within B158DRAFT_2243at 404.018 kb on + strand, within B158DRAFT_2243at 404.026 kb on - strand, within B158DRAFT_2243

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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400,366 - B158DRAFT_2241 0.73 +0.1
400,387 + B158DRAFT_2241 0.74 +0.1
400,406 + B158DRAFT_2241 0.75 -0.7
400,414 - B158DRAFT_2241 0.75 -2.4
400,421 - B158DRAFT_2241 0.75 +0.1
400,547 + B158DRAFT_2241 0.80 -1.0
400,566 - B158DRAFT_2241 0.80 -0.1
400,621 - B158DRAFT_2241 0.82 -0.2
400,703 - B158DRAFT_2241 0.85 +0.4
400,713 - B158DRAFT_2241 0.85 -0.5
400,777 + B158DRAFT_2241 0.88 +0.1
400,777 + B158DRAFT_2241 0.88 +0.5
400,777 + B158DRAFT_2241 0.88 +0.2
400,777 + B158DRAFT_2241 0.88 -0.1
400,777 + B158DRAFT_2241 0.88 -1.6
400,785 - B158DRAFT_2241 0.88 +0.4
400,785 - B158DRAFT_2241 0.88 -1.9
400,785 - B158DRAFT_2241 0.88 +0.2
400,794 + B158DRAFT_2241 0.88 -0.5
400,794 + B158DRAFT_2241 0.88 -0.6
400,802 - B158DRAFT_2241 0.89 -0.1
400,830 + B158DRAFT_2241 0.89 -0.9
400,830 + B158DRAFT_2241 0.89 -0.1
400,838 - B158DRAFT_2241 0.90 -0.4
400,866 - -0.2
400,866 - +0.0
400,874 - -0.0
400,901 + +0.3
400,909 - +0.1
400,990 + +0.3
401,052 - -0.6
401,072 - +0.2
401,074 - +0.1
401,080 + -0.6
401,088 - -1.3
401,095 - +0.3
401,234 + +0.3
401,242 - -0.1
401,293 - -0.6
401,334 + +0.5
401,466 + B158DRAFT_2242 0.11 -0.5
401,503 - B158DRAFT_2242 0.13 -0.5
401,540 + -0.2
401,540 + B158DRAFT_2242 0.15 +0.7
401,635 + B158DRAFT_2242 0.20 -0.2
401,635 + B158DRAFT_2242 0.20 +0.5
401,643 - B158DRAFT_2242 0.21 +0.1
401,648 + B158DRAFT_2242 0.21 +0.9
401,648 - B158DRAFT_2242 0.21 +0.2
401,661 - B158DRAFT_2242 0.22 -1.0
401,661 - B158DRAFT_2242 0.22 +0.6
401,667 + B158DRAFT_2242 0.22 +0.3
401,700 - B158DRAFT_2242 0.24 +0.3
401,707 + B158DRAFT_2242 0.24 +0.1
401,707 + B158DRAFT_2242 0.24 -0.6
401,707 + B158DRAFT_2242 0.24 -0.6
401,715 - B158DRAFT_2242 0.25 -0.3
401,741 - B158DRAFT_2242 0.26 +0.1
401,771 - B158DRAFT_2242 0.28 -0.3
401,781 + B158DRAFT_2242 0.29 +0.2
401,789 - B158DRAFT_2242 0.29 +0.1
401,805 - B158DRAFT_2242 0.30 +0.2
401,840 - B158DRAFT_2242 0.32 +0.3
401,841 + B158DRAFT_2242 0.32 +0.2
401,849 - B158DRAFT_2242 0.32 +0.1
401,849 - B158DRAFT_2242 0.32 -0.6
401,884 - B158DRAFT_2242 0.34 +0.0
401,915 - B158DRAFT_2242 0.36 -0.2
401,959 - B158DRAFT_2242 0.39 -0.1
401,984 + B158DRAFT_2242 0.40 -0.3
402,029 - B158DRAFT_2242 0.43 -0.2
402,065 - B158DRAFT_2242 0.45 +0.8
402,076 + B158DRAFT_2242 0.45 -0.5
402,076 + B158DRAFT_2242 0.45 +1.0
402,094 - B158DRAFT_2242 0.46 +0.8
402,230 - B158DRAFT_2242 0.54 +0.5
402,300 - B158DRAFT_2242 0.58 +0.0
402,321 + B158DRAFT_2242 0.59 +0.1
402,328 + B158DRAFT_2242 0.60 -0.3
402,329 - B158DRAFT_2242 0.60 -0.1
402,339 + B158DRAFT_2242 0.60 -0.1
402,339 - B158DRAFT_2242 0.60 -0.3
402,339 - B158DRAFT_2242 0.60 +0.1
402,347 + B158DRAFT_2242 0.61 -1.6
402,347 - B158DRAFT_2242 0.61 +0.3
402,347 - B158DRAFT_2242 0.61 +0.1
402,357 - B158DRAFT_2242 0.61 +1.1
402,365 - B158DRAFT_2242 0.62 +0.4
402,378 - B158DRAFT_2242 0.62 +0.1
402,463 + B158DRAFT_2242 0.67 +0.2
402,463 + B158DRAFT_2242 0.67 -0.5
402,470 + B158DRAFT_2242 0.68 -0.6
402,471 - B158DRAFT_2242 0.68 +0.6
402,538 - B158DRAFT_2242 0.72 +0.0
402,546 + B158DRAFT_2242 0.72 +1.0
402,551 + B158DRAFT_2242 0.72 +0.5
402,559 - B158DRAFT_2242 0.73 +0.3
402,559 - B158DRAFT_2242 0.73 +0.1
402,559 - B158DRAFT_2242 0.73 -0.1
402,605 + B158DRAFT_2242 0.75 -0.1
402,617 - B158DRAFT_2242 0.76 +0.1
402,721 - B158DRAFT_2242 0.82 -0.6
402,930 + +0.1
402,930 + +0.4
402,938 - -0.2
402,938 - -0.1
402,941 + +0.1
402,986 + -0.4
403,007 + -0.2
403,022 + -0.0
403,056 + +0.5
403,145 + +0.3
403,175 + -0.1
403,184 + +0.8
403,191 + +0.9
403,199 - +0.7
403,199 - +0.0
403,222 + -0.5
403,222 + +0.3
403,224 - +0.1
403,232 + -1.0
403,240 - -1.2
403,240 - -1.1
403,246 + B158DRAFT_2243 0.10 -0.1
403,254 - B158DRAFT_2243 0.11 -0.5
403,254 - B158DRAFT_2243 0.11 -0.7
403,282 - B158DRAFT_2243 0.13 +1.9
403,339 - B158DRAFT_2243 0.16 -2.2
403,408 + B158DRAFT_2243 0.21 -0.2
403,416 - B158DRAFT_2243 0.21 -0.6
403,433 + B158DRAFT_2243 0.22 -0.5
403,452 - B158DRAFT_2243 0.24 -0.6
403,481 + B158DRAFT_2243 0.26 -2.2
403,481 + B158DRAFT_2243 0.26 +0.0
403,481 + B158DRAFT_2243 0.26 -0.1
403,489 - B158DRAFT_2243 0.26 +1.0
403,489 - B158DRAFT_2243 0.26 -1.6
403,505 - B158DRAFT_2243 0.27 -0.5
403,612 + B158DRAFT_2243 0.34 -1.6
403,619 + B158DRAFT_2243 0.35 -1.4
403,620 - B158DRAFT_2243 0.35 -0.5
403,628 + B158DRAFT_2243 0.35 -0.6
403,628 + B158DRAFT_2243 0.35 +1.8
403,636 - B158DRAFT_2243 0.36 -2.0
403,689 + B158DRAFT_2243 0.39 -1.6
403,689 + B158DRAFT_2243 0.39 +0.0
403,697 - B158DRAFT_2243 0.40 -2.7
403,713 + B158DRAFT_2243 0.41 -0.4
403,721 - B158DRAFT_2243 0.41 -0.0
403,721 - B158DRAFT_2243 0.41 +0.2
403,848 + B158DRAFT_2243 0.50 -0.5
403,918 + B158DRAFT_2243 0.54 -2.4
403,929 + B158DRAFT_2243 0.55 +0.2
403,930 + B158DRAFT_2243 0.55 -0.5
403,937 - B158DRAFT_2243 0.56 -0.6
403,937 - B158DRAFT_2243 0.56 -0.6
403,937 - B158DRAFT_2243 0.56 +1.0
403,943 - B158DRAFT_2243 0.56 +0.6
403,943 - B158DRAFT_2243 0.56 -0.0
403,956 - B158DRAFT_2243 0.57 +0.0
403,976 + B158DRAFT_2243 0.58 -0.5
403,984 - B158DRAFT_2243 0.59 -0.5
404,018 + B158DRAFT_2243 0.61 +0.5
404,026 - B158DRAFT_2243 0.62 +1.1

Or see this region's nucleotide sequence