Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1597

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1596 and B158DRAFT_1597 are separated by 33 nucleotidesB158DRAFT_1597 and B158DRAFT_1598 are separated by 7 nucleotides B158DRAFT_1596: B158DRAFT_1596 - Biopolymer transport proteins, at 1,656,889 to 1,657,542 _1596 B158DRAFT_1597: B158DRAFT_1597 - Biopolymer transport protein, at 1,657,576 to 1,657,998 _1597 B158DRAFT_1598: B158DRAFT_1598 - lipid A export permease/ATP-binding protein MsbA, at 1,658,006 to 1,659,754 _1598 Position (kb) 1657 1658Strain fitness (log2 ratio) -3 -2 -1 0 1at 1656.700 kb on - strandat 1656.707 kb on + strandat 1656.707 kb on + strandat 1656.718 kb on + strandat 1656.721 kb on - strandat 1656.721 kb on - strandat 1656.794 kb on + strandat 1656.794 kb on + strandat 1656.819 kb on + strandat 1656.827 kb on - strandat 1656.828 kb on - strandat 1656.920 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.938 kb on - strandat 1656.967 kb on - strand, within B158DRAFT_1596at 1656.997 kb on - strand, within B158DRAFT_1596at 1657.005 kb on + strand, within B158DRAFT_1596at 1657.005 kb on + strand, within B158DRAFT_1596at 1657.013 kb on - strand, within B158DRAFT_1596at 1657.013 kb on - strand, within B158DRAFT_1596at 1657.056 kb on + strand, within B158DRAFT_1596at 1657.056 kb on + strand, within B158DRAFT_1596at 1657.056 kb on + strand, within B158DRAFT_1596at 1657.056 kb on + strand, within B158DRAFT_1596at 1657.056 kb on + strand, within B158DRAFT_1596at 1657.056 kb on + strand, within B158DRAFT_1596at 1657.056 kb on + strand, within B158DRAFT_1596at 1657.064 kb on - strand, within B158DRAFT_1596at 1657.064 kb on - strand, within B158DRAFT_1596at 1657.064 kb on - strand, within B158DRAFT_1596at 1657.064 kb on - strand, within B158DRAFT_1596at 1657.064 kb on - strand, within B158DRAFT_1596at 1657.064 kb on - strand, within B158DRAFT_1596at 1657.128 kb on + strand, within B158DRAFT_1596at 1657.134 kb on + strand, within B158DRAFT_1596at 1657.134 kb on + strand, within B158DRAFT_1596at 1657.134 kb on + strand, within B158DRAFT_1596at 1657.134 kb on + strand, within B158DRAFT_1596at 1657.136 kb on - strand, within B158DRAFT_1596at 1657.142 kb on - strand, within B158DRAFT_1596at 1657.142 kb on - strand, within B158DRAFT_1596at 1657.142 kb on - strand, within B158DRAFT_1596at 1657.213 kb on + strand, within B158DRAFT_1596at 1657.213 kb on + strand, within B158DRAFT_1596at 1657.213 kb on + strand, within B158DRAFT_1596at 1657.213 kb on + strand, within B158DRAFT_1596at 1657.213 kb on + strand, within B158DRAFT_1596at 1657.213 kb on + strand, within B158DRAFT_1596at 1657.213 kb on + strand, within B158DRAFT_1596at 1657.213 kb on + strand, within B158DRAFT_1596at 1657.213 kb on + strand, within B158DRAFT_1596at 1657.219 kb on - strand, within B158DRAFT_1596at 1657.221 kb on - strand, within B158DRAFT_1596at 1657.221 kb on - strand, within B158DRAFT_1596at 1657.221 kb on - strand, within B158DRAFT_1596at 1657.263 kb on + strand, within B158DRAFT_1596at 1657.271 kb on - strand, within B158DRAFT_1596at 1657.271 kb on - strand, within B158DRAFT_1596at 1657.271 kb on - strand, within B158DRAFT_1596at 1657.294 kb on + strand, within B158DRAFT_1596at 1657.294 kb on + strand, within B158DRAFT_1596at 1657.335 kb on + strand, within B158DRAFT_1596at 1657.343 kb on - strand, within B158DRAFT_1596at 1657.349 kb on - strand, within B158DRAFT_1596at 1657.391 kb on - strand, within B158DRAFT_1596at 1657.486 kb on + strandat 1657.486 kb on + strandat 1657.494 kb on - strandat 1657.494 kb on - strandat 1657.504 kb on - strandat 1657.565 kb on - strandat 1657.638 kb on - strand, within B158DRAFT_1597at 1657.663 kb on + strand, within B158DRAFT_1597at 1657.671 kb on - strand, within B158DRAFT_1597at 1657.806 kb on - strand, within B158DRAFT_1597at 1657.823 kb on + strand, within B158DRAFT_1597at 1657.835 kb on + strand, within B158DRAFT_1597at 1657.895 kb on + strand, within B158DRAFT_1597at 1658.002 kb on + strandat 1658.002 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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1,656,700 - +0.6
1,656,707 + +1.7
1,656,707 + -0.4
1,656,718 + +0.0
1,656,721 - +0.3
1,656,721 - -0.4
1,656,794 + -0.3
1,656,794 + -0.5
1,656,819 + -1.0
1,656,827 - -0.3
1,656,828 - -1.2
1,656,920 + -0.8
1,656,930 + -2.1
1,656,930 + +0.3
1,656,930 + -1.3
1,656,938 - -0.7
1,656,967 - B158DRAFT_1596 0.12 -0.8
1,656,997 - B158DRAFT_1596 0.17 -0.9
1,657,005 + B158DRAFT_1596 0.18 -2.2
1,657,005 + B158DRAFT_1596 0.18 -1.5
1,657,013 - B158DRAFT_1596 0.19 -1.6
1,657,013 - B158DRAFT_1596 0.19 -2.8
1,657,056 + B158DRAFT_1596 0.26 -0.9
1,657,056 + B158DRAFT_1596 0.26 -1.1
1,657,056 + B158DRAFT_1596 0.26 -0.3
1,657,056 + B158DRAFT_1596 0.26 -0.6
1,657,056 + B158DRAFT_1596 0.26 -1.0
1,657,056 + B158DRAFT_1596 0.26 -1.6
1,657,056 + B158DRAFT_1596 0.26 -0.9
1,657,064 - B158DRAFT_1596 0.27 -1.4
1,657,064 - B158DRAFT_1596 0.27 -1.3
1,657,064 - B158DRAFT_1596 0.27 -1.2
1,657,064 - B158DRAFT_1596 0.27 -1.5
1,657,064 - B158DRAFT_1596 0.27 -1.0
1,657,064 - B158DRAFT_1596 0.27 -1.6
1,657,128 + B158DRAFT_1596 0.37 -1.1
1,657,134 + B158DRAFT_1596 0.37 -0.7
1,657,134 + B158DRAFT_1596 0.37 -1.3
1,657,134 + B158DRAFT_1596 0.37 -2.1
1,657,134 + B158DRAFT_1596 0.37 -1.3
1,657,136 - B158DRAFT_1596 0.38 -1.0
1,657,142 - B158DRAFT_1596 0.39 -2.6
1,657,142 - B158DRAFT_1596 0.39 -0.5
1,657,142 - B158DRAFT_1596 0.39 -1.0
1,657,213 + B158DRAFT_1596 0.50 -0.7
1,657,213 + B158DRAFT_1596 0.50 -0.8
1,657,213 + B158DRAFT_1596 0.50 -0.4
1,657,213 + B158DRAFT_1596 0.50 -0.2
1,657,213 + B158DRAFT_1596 0.50 -1.4
1,657,213 + B158DRAFT_1596 0.50 -0.7
1,657,213 + B158DRAFT_1596 0.50 -0.5
1,657,213 + B158DRAFT_1596 0.50 -0.7
1,657,213 + B158DRAFT_1596 0.50 -1.0
1,657,219 - B158DRAFT_1596 0.50 +0.6
1,657,221 - B158DRAFT_1596 0.51 -0.8
1,657,221 - B158DRAFT_1596 0.51 -1.9
1,657,221 - B158DRAFT_1596 0.51 -1.0
1,657,263 + B158DRAFT_1596 0.57 -0.8
1,657,271 - B158DRAFT_1596 0.58 -1.4
1,657,271 - B158DRAFT_1596 0.58 -0.2
1,657,271 - B158DRAFT_1596 0.58 -1.0
1,657,294 + B158DRAFT_1596 0.62 -2.2
1,657,294 + B158DRAFT_1596 0.62 +1.3
1,657,335 + B158DRAFT_1596 0.68 -2.2
1,657,343 - B158DRAFT_1596 0.69 -0.7
1,657,349 - B158DRAFT_1596 0.70 +0.0
1,657,391 - B158DRAFT_1596 0.77 -1.4
1,657,486 + -0.2
1,657,486 + -1.0
1,657,494 - -1.1
1,657,494 - -0.7
1,657,504 - -0.8
1,657,565 - -1.0
1,657,638 - B158DRAFT_1597 0.15 -0.4
1,657,663 + B158DRAFT_1597 0.21 -2.6
1,657,671 - B158DRAFT_1597 0.22 -2.1
1,657,806 - B158DRAFT_1597 0.54 -1.4
1,657,823 + B158DRAFT_1597 0.58 -0.8
1,657,835 + B158DRAFT_1597 0.61 -0.5
1,657,895 + B158DRAFT_1597 0.75 -1.3
1,658,002 + -0.1
1,658,002 + -1.8

Or see this region's nucleotide sequence