Experiment: m.b. Nickel (II) chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1579 and B158DRAFT_1580 are separated by 129 nucleotides B158DRAFT_1580 and B158DRAFT_1581 are separated by 2 nucleotides
B158DRAFT_1579: B158DRAFT_1579 - 2,4-dienoyl-CoA reductase (EC 1.3.1.34), at 1,638,404 to 1,640,425
_1579
B158DRAFT_1580: B158DRAFT_1580 - hypothetical protein, at 1,640,555 to 1,640,707
_1580
B158DRAFT_1581: B158DRAFT_1581 - diguanylate cyclase (GGDEF) domain, at 1,640,710 to 1,642,599
_1581
Position (kb)
1640
1641 Strain fitness (log2 ratio)
-1
0
1 at 1639.639 kb on + strand, within B158DRAFT_1579 at 1639.642 kb on + strand, within B158DRAFT_1579 at 1639.647 kb on - strand, within B158DRAFT_1579 at 1639.665 kb on - strand, within B158DRAFT_1579 at 1639.665 kb on - strand, within B158DRAFT_1579 at 1639.667 kb on + strand, within B158DRAFT_1579 at 1639.685 kb on + strand, within B158DRAFT_1579 at 1639.693 kb on - strand, within B158DRAFT_1579 at 1639.695 kb on + strand, within B158DRAFT_1579 at 1639.695 kb on + strand, within B158DRAFT_1579 at 1639.703 kb on - strand, within B158DRAFT_1579 at 1639.727 kb on + strand, within B158DRAFT_1579 at 1639.735 kb on - strand, within B158DRAFT_1579 at 1639.735 kb on - strand, within B158DRAFT_1579 at 1639.735 kb on - strand, within B158DRAFT_1579 at 1639.735 kb on - strand, within B158DRAFT_1579 at 1639.787 kb on + strand, within B158DRAFT_1579 at 1639.901 kb on + strand, within B158DRAFT_1579 at 1639.926 kb on + strand, within B158DRAFT_1579 at 1639.926 kb on + strand, within B158DRAFT_1579 at 1639.926 kb on + strand, within B158DRAFT_1579 at 1639.934 kb on + strand, within B158DRAFT_1579 at 1639.942 kb on - strand, within B158DRAFT_1579 at 1639.970 kb on + strand, within B158DRAFT_1579 at 1640.083 kb on - strand, within B158DRAFT_1579 at 1640.168 kb on - strand, within B158DRAFT_1579 at 1640.225 kb on + strand at 1640.291 kb on + strand at 1640.301 kb on - strand at 1640.360 kb on - strand at 1640.377 kb on - strand at 1640.379 kb on - strand at 1640.396 kb on - strand at 1640.526 kb on - strand at 1640.539 kb on + strand at 1640.551 kb on + strand at 1640.551 kb on + strand at 1640.598 kb on + strand, within B158DRAFT_1580 at 1640.606 kb on - strand, within B158DRAFT_1580 at 1640.606 kb on - strand, within B158DRAFT_1580 at 1640.620 kb on - strand, within B158DRAFT_1580 at 1640.620 kb on - strand, within B158DRAFT_1580 at 1640.844 kb on - strand at 1640.924 kb on - strand, within B158DRAFT_1581 at 1640.964 kb on - strand, within B158DRAFT_1581 at 1640.989 kb on - strand, within B158DRAFT_1581 at 1640.989 kb on - strand, within B158DRAFT_1581 at 1641.238 kb on - strand, within B158DRAFT_1581 at 1641.250 kb on + strand, within B158DRAFT_1581 at 1641.250 kb on + strand, within B158DRAFT_1581 at 1641.250 kb on + strand, within B158DRAFT_1581 at 1641.258 kb on - strand, within B158DRAFT_1581 at 1641.258 kb on - strand, within B158DRAFT_1581 at 1641.261 kb on + strand, within B158DRAFT_1581 at 1641.295 kb on - strand, within B158DRAFT_1581 at 1641.385 kb on + strand, within B158DRAFT_1581 at 1641.393 kb on - strand, within B158DRAFT_1581 at 1641.447 kb on + strand, within B158DRAFT_1581 at 1641.447 kb on + strand, within B158DRAFT_1581 at 1641.447 kb on + strand, within B158DRAFT_1581 at 1641.447 kb on + strand, within B158DRAFT_1581 at 1641.455 kb on - strand, within B158DRAFT_1581 at 1641.455 kb on - strand, within B158DRAFT_1581 at 1641.455 kb on - strand, within B158DRAFT_1581 at 1641.475 kb on - strand, within B158DRAFT_1581 at 1641.485 kb on - strand, within B158DRAFT_1581 at 1641.491 kb on - strand, within B158DRAFT_1581 at 1641.555 kb on + strand, within B158DRAFT_1581 at 1641.590 kb on - strand, within B158DRAFT_1581 at 1641.598 kb on - strand, within B158DRAFT_1581 at 1641.600 kb on - strand, within B158DRAFT_1581 at 1641.629 kb on + strand, within B158DRAFT_1581 at 1641.652 kb on + strand, within B158DRAFT_1581 at 1641.698 kb on + strand, within B158DRAFT_1581 at 1641.698 kb on + strand, within B158DRAFT_1581 at 1641.706 kb on - strand, within B158DRAFT_1581
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM remove 1,639,639 + B158DRAFT_1579 0.61 -1.4 1,639,642 + B158DRAFT_1579 0.61 -0.4 1,639,647 - B158DRAFT_1579 0.61 -0.6 1,639,665 - B158DRAFT_1579 0.62 -0.6 1,639,665 - B158DRAFT_1579 0.62 +0.1 1,639,667 + B158DRAFT_1579 0.62 -1.1 1,639,685 + B158DRAFT_1579 0.63 -0.5 1,639,693 - B158DRAFT_1579 0.64 -0.1 1,639,695 + B158DRAFT_1579 0.64 +0.1 1,639,695 + B158DRAFT_1579 0.64 -0.7 1,639,703 - B158DRAFT_1579 0.64 -0.5 1,639,727 + B158DRAFT_1579 0.65 -0.4 1,639,735 - B158DRAFT_1579 0.66 +0.1 1,639,735 - B158DRAFT_1579 0.66 +0.1 1,639,735 - B158DRAFT_1579 0.66 +0.3 1,639,735 - B158DRAFT_1579 0.66 -0.3 1,639,787 + B158DRAFT_1579 0.68 +0.2 1,639,901 + B158DRAFT_1579 0.74 +0.2 1,639,926 + B158DRAFT_1579 0.75 +0.2 1,639,926 + B158DRAFT_1579 0.75 +0.2 1,639,926 + B158DRAFT_1579 0.75 +0.9 1,639,934 + B158DRAFT_1579 0.76 -0.5 1,639,942 - B158DRAFT_1579 0.76 -0.5 1,639,970 + B158DRAFT_1579 0.77 +0.3 1,640,083 - B158DRAFT_1579 0.83 -0.3 1,640,168 - B158DRAFT_1579 0.87 -0.4 1,640,225 + -0.5 1,640,291 + +0.1 1,640,301 - +0.0 1,640,360 - +0.5 1,640,377 - -0.1 1,640,379 - -0.0 1,640,396 - -0.3 1,640,526 - +0.1 1,640,539 + -1.2 1,640,551 + -0.2 1,640,551 + -0.1 1,640,598 + B158DRAFT_1580 0.28 +0.4 1,640,606 - B158DRAFT_1580 0.33 +0.0 1,640,606 - B158DRAFT_1580 0.33 +0.1 1,640,620 - B158DRAFT_1580 0.42 +0.1 1,640,620 - B158DRAFT_1580 0.42 +0.4 1,640,844 - -0.7 1,640,924 - B158DRAFT_1581 0.11 -0.3 1,640,964 - B158DRAFT_1581 0.13 +0.2 1,640,989 - B158DRAFT_1581 0.15 -0.0 1,640,989 - B158DRAFT_1581 0.15 +0.2 1,641,238 - B158DRAFT_1581 0.28 -0.7 1,641,250 + B158DRAFT_1581 0.29 +0.3 1,641,250 + B158DRAFT_1581 0.29 -1.3 1,641,250 + B158DRAFT_1581 0.29 +0.3 1,641,258 - B158DRAFT_1581 0.29 +0.5 1,641,258 - B158DRAFT_1581 0.29 -0.1 1,641,261 + B158DRAFT_1581 0.29 -0.5 1,641,295 - B158DRAFT_1581 0.31 +0.3 1,641,385 + B158DRAFT_1581 0.36 -0.0 1,641,393 - B158DRAFT_1581 0.36 -0.0 1,641,447 + B158DRAFT_1581 0.39 +0.2 1,641,447 + B158DRAFT_1581 0.39 -0.7 1,641,447 + B158DRAFT_1581 0.39 +0.0 1,641,447 + B158DRAFT_1581 0.39 -0.2 1,641,455 - B158DRAFT_1581 0.39 -0.2 1,641,455 - B158DRAFT_1581 0.39 +0.1 1,641,455 - B158DRAFT_1581 0.39 -0.0 1,641,475 - B158DRAFT_1581 0.40 -0.3 1,641,485 - B158DRAFT_1581 0.41 -0.3 1,641,491 - B158DRAFT_1581 0.41 +0.2 1,641,555 + B158DRAFT_1581 0.45 +0.2 1,641,590 - B158DRAFT_1581 0.47 -0.3 1,641,598 - B158DRAFT_1581 0.47 +0.2 1,641,600 - B158DRAFT_1581 0.47 -0.6 1,641,629 + B158DRAFT_1581 0.49 -0.0 1,641,652 + B158DRAFT_1581 0.50 -0.6 1,641,698 + B158DRAFT_1581 0.52 +0.3 1,641,698 + B158DRAFT_1581 0.52 -0.1 1,641,706 - B158DRAFT_1581 0.53 -0.0
Or see this region's nucleotide sequence