Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1488

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1486 and B158DRAFT_1487 are separated by 62 nucleotidesB158DRAFT_1487 and B158DRAFT_1488 are separated by 1 nucleotidesB158DRAFT_1488 and B158DRAFT_1489 are separated by 9 nucleotidesB158DRAFT_1489 and B158DRAFT_1490 overlap by 29 nucleotides B158DRAFT_1486: B158DRAFT_1486 - Uncharacterized protein conserved in bacteria, at 1,541,190 to 1,542,026 _1486 B158DRAFT_1487: B158DRAFT_1487 - Uncharacterized membrane protein, required for colicin V production, at 1,542,089 to 1,542,613 _1487 B158DRAFT_1488: B158DRAFT_1488 - amidophosphoribosyltransferase (EC 2.4.2.14), at 1,542,615 to 1,544,135 _1488 B158DRAFT_1489: B158DRAFT_1489 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 1,544,145 to 1,544,705 _1489 B158DRAFT_1490: B158DRAFT_1490 - diguanylate cyclase (GGDEF) domain, at 1,544,677 to 1,548,054 _1490 Position (kb) 1542 1543 1544 1545Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1541.627 kb on + strand, within B158DRAFT_1486at 1541.635 kb on - strand, within B158DRAFT_1486at 1541.677 kb on - strand, within B158DRAFT_1486at 1541.718 kb on - strand, within B158DRAFT_1486at 1541.831 kb on + strand, within B158DRAFT_1486at 1541.858 kb on + strand, within B158DRAFT_1486at 1541.866 kb on - strand, within B158DRAFT_1486at 1541.866 kb on - strand, within B158DRAFT_1486at 1541.870 kb on + strand, within B158DRAFT_1486at 1541.870 kb on + strand, within B158DRAFT_1486at 1541.870 kb on + strand, within B158DRAFT_1486at 1541.873 kb on + strand, within B158DRAFT_1486at 1541.873 kb on + strand, within B158DRAFT_1486at 1541.873 kb on + strand, within B158DRAFT_1486at 1541.873 kb on + strand, within B158DRAFT_1486at 1541.873 kb on + strand, within B158DRAFT_1486at 1541.873 kb on + strand, within B158DRAFT_1486at 1541.878 kb on - strand, within B158DRAFT_1486at 1541.878 kb on - strand, within B158DRAFT_1486at 1541.881 kb on - strand, within B158DRAFT_1486at 1541.900 kb on - strand, within B158DRAFT_1486at 1541.918 kb on + strand, within B158DRAFT_1486at 1541.918 kb on + strand, within B158DRAFT_1486at 1541.926 kb on - strand, within B158DRAFT_1486at 1541.952 kb on + strandat 1541.962 kb on - strandat 1541.986 kb on - strandat 1541.990 kb on + strandat 1541.990 kb on + strandat 1541.990 kb on + strandat 1541.990 kb on + strandat 1541.990 kb on + strandat 1541.990 kb on + strandat 1541.990 kb on + strandat 1541.991 kb on - strandat 1541.998 kb on - strandat 1541.998 kb on - strandat 1541.998 kb on - strandat 1541.998 kb on - strandat 1541.998 kb on - strandat 1541.999 kb on + strandat 1542.012 kb on - strandat 1542.365 kb on + strand, within B158DRAFT_1487at 1542.370 kb on + strand, within B158DRAFT_1487at 1542.409 kb on + strand, within B158DRAFT_1487at 1542.409 kb on + strand, within B158DRAFT_1487at 1542.409 kb on + strand, within B158DRAFT_1487at 1542.409 kb on + strand, within B158DRAFT_1487at 1542.409 kb on + strand, within B158DRAFT_1487at 1542.409 kb on + strand, within B158DRAFT_1487at 1542.409 kb on + strand, within B158DRAFT_1487at 1542.457 kb on + strand, within B158DRAFT_1487at 1544.075 kb on - strandat 1544.091 kb on + strandat 1544.092 kb on - strandat 1544.099 kb on - strandat 1544.100 kb on - strandat 1544.182 kb on + strandat 1544.245 kb on + strand, within B158DRAFT_1489at 1544.360 kb on + strand, within B158DRAFT_1489at 1544.384 kb on + strand, within B158DRAFT_1489at 1544.423 kb on - strand, within B158DRAFT_1489at 1544.423 kb on - strand, within B158DRAFT_1489at 1544.484 kb on - strand, within B158DRAFT_1489at 1544.538 kb on + strand, within B158DRAFT_1489at 1544.538 kb on + strand, within B158DRAFT_1489at 1544.583 kb on - strand, within B158DRAFT_1489at 1544.724 kb on - strandat 1544.788 kb on + strandat 1544.788 kb on + strandat 1544.808 kb on - strandat 1544.877 kb on - strandat 1544.894 kb on - strandat 1544.894 kb on - strandat 1544.899 kb on - strandat 1544.915 kb on - strandat 1545.020 kb on - strand, within B158DRAFT_1490at 1545.066 kb on - strand, within B158DRAFT_1490at 1545.066 kb on - strand, within B158DRAFT_1490at 1545.068 kb on + strand, within B158DRAFT_1490at 1545.076 kb on - strand, within B158DRAFT_1490at 1545.083 kb on + strand, within B158DRAFT_1490at 1545.091 kb on - strand, within B158DRAFT_1490at 1545.134 kb on + strand, within B158DRAFT_1490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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1,541,627 + B158DRAFT_1486 0.52 +0.2
1,541,635 - B158DRAFT_1486 0.53 +1.2
1,541,677 - B158DRAFT_1486 0.58 +0.3
1,541,718 - B158DRAFT_1486 0.63 +0.2
1,541,831 + B158DRAFT_1486 0.77 +0.2
1,541,858 + B158DRAFT_1486 0.80 +2.0
1,541,866 - B158DRAFT_1486 0.81 +0.9
1,541,866 - B158DRAFT_1486 0.81 -0.1
1,541,870 + B158DRAFT_1486 0.81 +0.6
1,541,870 + B158DRAFT_1486 0.81 -0.6
1,541,870 + B158DRAFT_1486 0.81 -0.3
1,541,873 + B158DRAFT_1486 0.82 +0.3
1,541,873 + B158DRAFT_1486 0.82 +0.4
1,541,873 + B158DRAFT_1486 0.82 -0.0
1,541,873 + B158DRAFT_1486 0.82 -0.2
1,541,873 + B158DRAFT_1486 0.82 +0.8
1,541,873 + B158DRAFT_1486 0.82 +0.1
1,541,878 - B158DRAFT_1486 0.82 +0.0
1,541,878 - B158DRAFT_1486 0.82 +0.5
1,541,881 - B158DRAFT_1486 0.83 +0.7
1,541,900 - B158DRAFT_1486 0.85 +0.5
1,541,918 + B158DRAFT_1486 0.87 -0.1
1,541,918 + B158DRAFT_1486 0.87 -0.2
1,541,926 - B158DRAFT_1486 0.88 -0.0
1,541,952 + -0.1
1,541,962 - +0.8
1,541,986 - +0.6
1,541,990 + +0.4
1,541,990 + +0.6
1,541,990 + -0.5
1,541,990 + -0.1
1,541,990 + +0.4
1,541,990 + -1.6
1,541,990 + -0.3
1,541,991 - -0.5
1,541,998 - +1.0
1,541,998 - +0.5
1,541,998 - +0.0
1,541,998 - -0.1
1,541,998 - +0.1
1,541,999 + -0.7
1,542,012 - +0.3
1,542,365 + B158DRAFT_1487 0.53 -2.4
1,542,370 + B158DRAFT_1487 0.54 -2.3
1,542,409 + B158DRAFT_1487 0.61 -1.6
1,542,409 + B158DRAFT_1487 0.61 -2.2
1,542,409 + B158DRAFT_1487 0.61 -2.3
1,542,409 + B158DRAFT_1487 0.61 -2.5
1,542,409 + B158DRAFT_1487 0.61 -1.3
1,542,409 + B158DRAFT_1487 0.61 -2.0
1,542,409 + B158DRAFT_1487 0.61 -3.3
1,542,457 + B158DRAFT_1487 0.70 -2.8
1,544,075 - -1.6
1,544,091 + -1.5
1,544,092 - -2.7
1,544,099 - -1.8
1,544,100 - -2.3
1,544,182 + -1.5
1,544,245 + B158DRAFT_1489 0.18 -0.8
1,544,360 + B158DRAFT_1489 0.38 -0.5
1,544,384 + B158DRAFT_1489 0.43 -0.9
1,544,423 - B158DRAFT_1489 0.50 -0.8
1,544,423 - B158DRAFT_1489 0.50 -1.0
1,544,484 - B158DRAFT_1489 0.60 -1.6
1,544,538 + B158DRAFT_1489 0.70 -1.3
1,544,538 + B158DRAFT_1489 0.70 -1.6
1,544,583 - B158DRAFT_1489 0.78 -1.7
1,544,724 - -1.0
1,544,788 + -0.5
1,544,788 + -2.9
1,544,808 - -1.5
1,544,877 - -1.3
1,544,894 - -1.3
1,544,894 - -1.4
1,544,899 - -0.9
1,544,915 - -3.0
1,545,020 - B158DRAFT_1490 0.10 -2.2
1,545,066 - B158DRAFT_1490 0.12 -1.9
1,545,066 - B158DRAFT_1490 0.12 -0.8
1,545,068 + B158DRAFT_1490 0.12 -2.0
1,545,076 - B158DRAFT_1490 0.12 -1.3
1,545,083 + B158DRAFT_1490 0.12 +0.3
1,545,091 - B158DRAFT_1490 0.12 +1.0
1,545,134 + B158DRAFT_1490 0.14 -1.4

Or see this region's nucleotide sequence