Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1143

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1141 and B158DRAFT_1142 are separated by 36 nucleotidesB158DRAFT_1142 and B158DRAFT_1143 overlap by 1 nucleotidesB158DRAFT_1143 and B158DRAFT_1144 are separated by 104 nucleotidesB158DRAFT_1144 and B158DRAFT_1145 are separated by 56 nucleotides B158DRAFT_1141: B158DRAFT_1141 - tol-pal system beta propeller repeat protein TolB, at 1,178,947 to 1,180,311 _1141 B158DRAFT_1142: B158DRAFT_1142 - peptidoglycan-associated lipoprotein, at 1,180,348 to 1,180,866 _1142 B158DRAFT_1143: B158DRAFT_1143 - tol-pal system protein YbgF, at 1,180,866 to 1,181,600 _1143 B158DRAFT_1144: B158DRAFT_1144 - Organic radical activating enzymes, at 1,181,705 to 1,182,346 _1144 B158DRAFT_1145: B158DRAFT_1145 - hypothetical protein, at 1,182,403 to 1,182,510 _1145 Position (kb) 1180 1181 1182Strain fitness (log2 ratio) -3 -2 -1 0 1at 1181.233 kb on + strand, within B158DRAFT_1143at 1181.291 kb on + strand, within B158DRAFT_1143at 1181.490 kb on - strand, within B158DRAFT_1143at 1181.623 kb on - strandat 1181.697 kb on - strandat 1181.697 kb on - strandat 1181.697 kb on - strandat 1181.709 kb on - strandat 1181.711 kb on - strandat 1181.746 kb on + strandat 1181.755 kb on - strandat 1181.756 kb on - strandat 1181.756 kb on - strandat 1181.777 kb on + strand, within B158DRAFT_1144at 1181.777 kb on + strand, within B158DRAFT_1144at 1181.785 kb on - strand, within B158DRAFT_1144at 1181.802 kb on - strand, within B158DRAFT_1144at 1181.809 kb on - strand, within B158DRAFT_1144at 1181.895 kb on + strand, within B158DRAFT_1144at 1181.970 kb on + strand, within B158DRAFT_1144at 1181.972 kb on + strand, within B158DRAFT_1144at 1181.978 kb on - strand, within B158DRAFT_1144at 1182.030 kb on + strand, within B158DRAFT_1144at 1182.102 kb on + strand, within B158DRAFT_1144at 1182.112 kb on + strand, within B158DRAFT_1144at 1182.231 kb on + strand, within B158DRAFT_1144at 1182.231 kb on + strand, within B158DRAFT_1144at 1182.231 kb on + strand, within B158DRAFT_1144at 1182.231 kb on + strand, within B158DRAFT_1144at 1182.231 kb on + strand, within B158DRAFT_1144at 1182.239 kb on - strand, within B158DRAFT_1144at 1182.239 kb on - strand, within B158DRAFT_1144at 1182.239 kb on - strand, within B158DRAFT_1144at 1182.239 kb on - strand, within B158DRAFT_1144at 1182.239 kb on - strand, within B158DRAFT_1144at 1182.239 kb on - strand, within B158DRAFT_1144at 1182.241 kb on + strand, within B158DRAFT_1144at 1182.249 kb on + strand, within B158DRAFT_1144at 1182.345 kb on + strandat 1182.372 kb on - strandat 1182.467 kb on + strand, within B158DRAFT_1145at 1182.469 kb on + strand, within B158DRAFT_1145at 1182.475 kb on - strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on + strand, within B158DRAFT_1145at 1182.477 kb on - strand, within B158DRAFT_1145at 1182.485 kb on - strand, within B158DRAFT_1145at 1182.485 kb on - strand, within B158DRAFT_1145at 1182.485 kb on - strand, within B158DRAFT_1145at 1182.485 kb on - strand, within B158DRAFT_1145at 1182.485 kb on - strand, within B158DRAFT_1145at 1182.485 kb on - strand, within B158DRAFT_1145at 1182.485 kb on - strand, within B158DRAFT_1145at 1182.485 kb on - strand, within B158DRAFT_1145at 1182.485 kb on - strand, within B158DRAFT_1145at 1182.530 kb on + strandat 1182.530 kb on + strandat 1182.530 kb on + strandat 1182.530 kb on + strandat 1182.556 kb on + strandat 1182.556 kb on + strandat 1182.563 kb on + strandat 1182.564 kb on - strandat 1182.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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1,181,233 + B158DRAFT_1143 0.50 -3.3
1,181,291 + B158DRAFT_1143 0.58 -3.7
1,181,490 - B158DRAFT_1143 0.85 -1.3
1,181,623 - -0.3
1,181,697 - -0.4
1,181,697 - -0.2
1,181,697 - -0.4
1,181,709 - -0.6
1,181,711 - -0.3
1,181,746 + -0.1
1,181,755 - -0.7
1,181,756 - -0.9
1,181,756 - -0.8
1,181,777 + B158DRAFT_1144 0.11 -0.2
1,181,777 + B158DRAFT_1144 0.11 -0.4
1,181,785 - B158DRAFT_1144 0.12 -1.1
1,181,802 - B158DRAFT_1144 0.15 -0.3
1,181,809 - B158DRAFT_1144 0.16 -0.2
1,181,895 + B158DRAFT_1144 0.30 -0.9
1,181,970 + B158DRAFT_1144 0.41 -0.4
1,181,972 + B158DRAFT_1144 0.42 -0.5
1,181,978 - B158DRAFT_1144 0.43 -1.6
1,182,030 + B158DRAFT_1144 0.51 -1.5
1,182,102 + B158DRAFT_1144 0.62 -0.5
1,182,112 + B158DRAFT_1144 0.63 -0.5
1,182,231 + B158DRAFT_1144 0.82 -0.3
1,182,231 + B158DRAFT_1144 0.82 -0.4
1,182,231 + B158DRAFT_1144 0.82 -0.5
1,182,231 + B158DRAFT_1144 0.82 -0.4
1,182,231 + B158DRAFT_1144 0.82 -1.0
1,182,239 - B158DRAFT_1144 0.83 -0.3
1,182,239 - B158DRAFT_1144 0.83 -1.4
1,182,239 - B158DRAFT_1144 0.83 -0.2
1,182,239 - B158DRAFT_1144 0.83 +0.3
1,182,239 - B158DRAFT_1144 0.83 -0.2
1,182,239 - B158DRAFT_1144 0.83 -0.4
1,182,241 + B158DRAFT_1144 0.83 +0.1
1,182,249 + B158DRAFT_1144 0.85 +0.2
1,182,345 + -0.2
1,182,372 - -0.1
1,182,467 + B158DRAFT_1145 0.59 -0.6
1,182,469 + B158DRAFT_1145 0.61 +0.3
1,182,475 - B158DRAFT_1145 0.67 +0.0
1,182,477 + B158DRAFT_1145 0.69 -0.2
1,182,477 + B158DRAFT_1145 0.69 -0.9
1,182,477 + B158DRAFT_1145 0.69 -0.1
1,182,477 + B158DRAFT_1145 0.69 +0.0
1,182,477 + B158DRAFT_1145 0.69 +0.1
1,182,477 + B158DRAFT_1145 0.69 -1.1
1,182,477 + B158DRAFT_1145 0.69 -0.2
1,182,477 + B158DRAFT_1145 0.69 +0.6
1,182,477 + B158DRAFT_1145 0.69 -0.3
1,182,477 + B158DRAFT_1145 0.69 +0.2
1,182,477 + B158DRAFT_1145 0.69 -0.1
1,182,477 + B158DRAFT_1145 0.69 +0.3
1,182,477 - B158DRAFT_1145 0.69 -0.4
1,182,485 - B158DRAFT_1145 0.76 -0.0
1,182,485 - B158DRAFT_1145 0.76 -0.5
1,182,485 - B158DRAFT_1145 0.76 +0.3
1,182,485 - B158DRAFT_1145 0.76 +0.0
1,182,485 - B158DRAFT_1145 0.76 -0.2
1,182,485 - B158DRAFT_1145 0.76 +0.0
1,182,485 - B158DRAFT_1145 0.76 +0.2
1,182,485 - B158DRAFT_1145 0.76 -0.5
1,182,485 - B158DRAFT_1145 0.76 -0.8
1,182,530 + -0.9
1,182,530 + -0.6
1,182,530 + +0.5
1,182,530 + -0.2
1,182,556 + +0.4
1,182,556 + +0.3
1,182,563 + -0.4
1,182,564 - +0.1
1,182,571 - -1.2

Or see this region's nucleotide sequence