Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1087

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1086 and B158DRAFT_1087 are separated by 42 nucleotidesB158DRAFT_1087 and B158DRAFT_1088 are separated by 10 nucleotides B158DRAFT_1086: B158DRAFT_1086 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 1,122,387 to 1,123,586 _1086 B158DRAFT_1087: B158DRAFT_1087 - site-2 protease. Metallo peptidase. MEROPS family M50B, at 1,123,629 to 1,124,966 _1087 B158DRAFT_1088: B158DRAFT_1088 - Beta-barrel assembly machine subunit BamA, at 1,124,977 to 1,127,448 _1088 Position (kb) 1123 1124 1125Strain fitness (log2 ratio) -3 -2 -1 0 1at 1123.650 kb on + strandat 1123.660 kb on + strandat 1123.660 kb on + strandat 1123.687 kb on + strandat 1123.706 kb on + strandat 1123.706 kb on + strandat 1123.706 kb on + strandat 1123.706 kb on + strandat 1123.706 kb on + strandat 1123.714 kb on - strandat 1123.714 kb on - strandat 1123.737 kb on + strandat 1123.737 kb on + strandat 1123.883 kb on + strand, within B158DRAFT_1087at 1123.891 kb on - strand, within B158DRAFT_1087at 1123.970 kb on + strand, within B158DRAFT_1087at 1123.978 kb on - strand, within B158DRAFT_1087at 1123.983 kb on + strand, within B158DRAFT_1087at 1123.983 kb on + strand, within B158DRAFT_1087at 1124.167 kb on + strand, within B158DRAFT_1087at 1124.217 kb on - strand, within B158DRAFT_1087at 1124.217 kb on - strand, within B158DRAFT_1087at 1124.363 kb on - strand, within B158DRAFT_1087at 1124.436 kb on + strand, within B158DRAFT_1087at 1124.464 kb on + strand, within B158DRAFT_1087at 1124.469 kb on + strand, within B158DRAFT_1087at 1124.474 kb on + strand, within B158DRAFT_1087at 1124.482 kb on - strand, within B158DRAFT_1087at 1124.496 kb on - strand, within B158DRAFT_1087at 1124.531 kb on + strand, within B158DRAFT_1087at 1124.531 kb on + strand, within B158DRAFT_1087at 1124.539 kb on - strand, within B158DRAFT_1087at 1124.539 kb on - strand, within B158DRAFT_1087at 1124.601 kb on + strand, within B158DRAFT_1087at 1124.601 kb on + strand, within B158DRAFT_1087at 1124.601 kb on + strand, within B158DRAFT_1087at 1124.601 kb on + strand, within B158DRAFT_1087at 1124.601 kb on + strand, within B158DRAFT_1087at 1124.609 kb on - strand, within B158DRAFT_1087at 1124.609 kb on - strand, within B158DRAFT_1087at 1124.656 kb on + strand, within B158DRAFT_1087at 1124.707 kb on + strand, within B158DRAFT_1087at 1124.707 kb on + strand, within B158DRAFT_1087at 1124.713 kb on - strand, within B158DRAFT_1087at 1124.713 kb on - strand, within B158DRAFT_1087at 1124.715 kb on - strand, within B158DRAFT_1087at 1124.721 kb on + strand, within B158DRAFT_1087at 1124.724 kb on - strand, within B158DRAFT_1087at 1124.726 kb on + strand, within B158DRAFT_1087at 1124.726 kb on + strand, within B158DRAFT_1087at 1124.726 kb on + strand, within B158DRAFT_1087at 1124.734 kb on - strand, within B158DRAFT_1087

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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1,123,650 + -3.0
1,123,660 + -1.9
1,123,660 + -1.7
1,123,687 + -1.7
1,123,706 + -2.3
1,123,706 + -1.8
1,123,706 + -2.0
1,123,706 + -2.1
1,123,706 + -0.9
1,123,714 - -2.5
1,123,714 - -2.0
1,123,737 + -1.6
1,123,737 + -2.3
1,123,883 + B158DRAFT_1087 0.19 -1.8
1,123,891 - B158DRAFT_1087 0.20 -1.9
1,123,970 + B158DRAFT_1087 0.25 -1.1
1,123,978 - B158DRAFT_1087 0.26 -2.0
1,123,983 + B158DRAFT_1087 0.26 -2.2
1,123,983 + B158DRAFT_1087 0.26 -1.8
1,124,167 + B158DRAFT_1087 0.40 -2.0
1,124,217 - B158DRAFT_1087 0.44 -2.1
1,124,217 - B158DRAFT_1087 0.44 -2.4
1,124,363 - B158DRAFT_1087 0.55 -2.6
1,124,436 + B158DRAFT_1087 0.60 -2.6
1,124,464 + B158DRAFT_1087 0.62 -2.4
1,124,469 + B158DRAFT_1087 0.63 -0.3
1,124,474 + B158DRAFT_1087 0.63 -2.2
1,124,482 - B158DRAFT_1087 0.64 -2.1
1,124,496 - B158DRAFT_1087 0.65 -2.2
1,124,531 + B158DRAFT_1087 0.67 -3.1
1,124,531 + B158DRAFT_1087 0.67 -1.7
1,124,539 - B158DRAFT_1087 0.68 -1.9
1,124,539 - B158DRAFT_1087 0.68 -2.0
1,124,601 + B158DRAFT_1087 0.73 -2.7
1,124,601 + B158DRAFT_1087 0.73 -2.7
1,124,601 + B158DRAFT_1087 0.73 -3.0
1,124,601 + B158DRAFT_1087 0.73 -2.1
1,124,601 + B158DRAFT_1087 0.73 -2.2
1,124,609 - B158DRAFT_1087 0.73 -2.4
1,124,609 - B158DRAFT_1087 0.73 -3.6
1,124,656 + B158DRAFT_1087 0.77 -1.9
1,124,707 + B158DRAFT_1087 0.81 -1.9
1,124,707 + B158DRAFT_1087 0.81 -3.1
1,124,713 - B158DRAFT_1087 0.81 -2.5
1,124,713 - B158DRAFT_1087 0.81 -2.0
1,124,715 - B158DRAFT_1087 0.81 -2.7
1,124,721 + B158DRAFT_1087 0.82 -1.0
1,124,724 - B158DRAFT_1087 0.82 -2.3
1,124,726 + B158DRAFT_1087 0.82 -1.2
1,124,726 + B158DRAFT_1087 0.82 -1.7
1,124,726 + B158DRAFT_1087 0.82 -3.0
1,124,734 - B158DRAFT_1087 0.83 -1.7

Or see this region's nucleotide sequence