Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1023

Experiment: m.b. Nickel (II) chloride 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1022 and B158DRAFT_1023 are separated by 78 nucleotidesB158DRAFT_1023 and B158DRAFT_1024 are separated by 118 nucleotidesB158DRAFT_1024 and B158DRAFT_1025 are separated by 28 nucleotides B158DRAFT_1022: B158DRAFT_1022 - cysteinyl-tRNA synthetase (EC 6.1.1.16), at 1,062,862 to 1,064,259 _1022 B158DRAFT_1023: B158DRAFT_1023 - Helix-turn-helix., at 1,064,338 to 1,065,081 _1023 B158DRAFT_1024: B158DRAFT_1024 - Phosphatidylglycerophosphate synthase, at 1,065,200 to 1,065,790 _1024 B158DRAFT_1025: B158DRAFT_1025 - Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase, at 1,065,819 to 1,066,778 _1025 Position (kb) 1064 1065 1066Strain fitness (log2 ratio) -1 0 1at 1064.376 kb on + strandat 1064.397 kb on + strandat 1064.397 kb on + strandat 1064.476 kb on - strand, within B158DRAFT_1023at 1064.476 kb on - strand, within B158DRAFT_1023at 1064.613 kb on - strand, within B158DRAFT_1023at 1064.619 kb on - strand, within B158DRAFT_1023at 1064.767 kb on + strand, within B158DRAFT_1023at 1064.915 kb on + strand, within B158DRAFT_1023at 1064.996 kb on + strand, within B158DRAFT_1023at 1064.996 kb on + strand, within B158DRAFT_1023at 1064.996 kb on + strand, within B158DRAFT_1023at 1064.996 kb on + strand, within B158DRAFT_1023at 1064.997 kb on - strand, within B158DRAFT_1023at 1064.997 kb on - strand, within B158DRAFT_1023at 1065.004 kb on - strand, within B158DRAFT_1023at 1065.004 kb on - strand, within B158DRAFT_1023at 1065.004 kb on - strand, within B158DRAFT_1023at 1065.004 kb on - strand, within B158DRAFT_1023at 1065.006 kb on + strand, within B158DRAFT_1023at 1065.029 kb on + strandat 1065.037 kb on - strandat 1065.287 kb on + strand, within B158DRAFT_1024at 1065.287 kb on + strand, within B158DRAFT_1024at 1065.290 kb on - strand, within B158DRAFT_1024at 1065.290 kb on - strand, within B158DRAFT_1024at 1065.329 kb on + strand, within B158DRAFT_1024at 1065.330 kb on + strand, within B158DRAFT_1024at 1065.330 kb on - strand, within B158DRAFT_1024at 1065.349 kb on - strand, within B158DRAFT_1024at 1065.401 kb on + strand, within B158DRAFT_1024at 1065.401 kb on + strand, within B158DRAFT_1024at 1065.409 kb on - strand, within B158DRAFT_1024at 1065.425 kb on - strand, within B158DRAFT_1024at 1065.447 kb on + strand, within B158DRAFT_1024at 1065.489 kb on + strand, within B158DRAFT_1024at 1065.532 kb on + strand, within B158DRAFT_1024at 1065.544 kb on + strand, within B158DRAFT_1024at 1065.608 kb on - strand, within B158DRAFT_1024at 1065.613 kb on + strand, within B158DRAFT_1024at 1065.648 kb on - strand, within B158DRAFT_1024at 1065.728 kb on - strand, within B158DRAFT_1024at 1065.785 kb on - strandat 1065.904 kb on + strandat 1065.943 kb on - strand, within B158DRAFT_1025at 1065.943 kb on - strand, within B158DRAFT_1025at 1065.943 kb on - strand, within B158DRAFT_1025at 1065.945 kb on + strand, within B158DRAFT_1025at 1065.945 kb on + strand, within B158DRAFT_1025at 1065.946 kb on + strand, within B158DRAFT_1025at 1065.946 kb on + strand, within B158DRAFT_1025at 1065.947 kb on + strand, within B158DRAFT_1025at 1065.954 kb on - strand, within B158DRAFT_1025at 1065.954 kb on - strand, within B158DRAFT_1025at 1065.959 kb on + strand, within B158DRAFT_1025at 1065.987 kb on - strand, within B158DRAFT_1025at 1065.996 kb on + strand, within B158DRAFT_1025at 1066.014 kb on - strand, within B158DRAFT_1025at 1066.014 kb on - strand, within B158DRAFT_1025at 1066.020 kb on - strand, within B158DRAFT_1025at 1066.026 kb on + strand, within B158DRAFT_1025

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
remove
1,064,376 + +0.0
1,064,397 + -0.3
1,064,397 + -0.1
1,064,476 - B158DRAFT_1023 0.19 -0.6
1,064,476 - B158DRAFT_1023 0.19 +0.2
1,064,613 - B158DRAFT_1023 0.37 -0.7
1,064,619 - B158DRAFT_1023 0.38 +0.3
1,064,767 + B158DRAFT_1023 0.58 +0.1
1,064,915 + B158DRAFT_1023 0.78 -0.4
1,064,996 + B158DRAFT_1023 0.88 -0.2
1,064,996 + B158DRAFT_1023 0.88 -0.6
1,064,996 + B158DRAFT_1023 0.88 -0.0
1,064,996 + B158DRAFT_1023 0.88 -0.6
1,064,997 - B158DRAFT_1023 0.89 -0.3
1,064,997 - B158DRAFT_1023 0.89 +0.3
1,065,004 - B158DRAFT_1023 0.90 +0.1
1,065,004 - B158DRAFT_1023 0.90 +0.1
1,065,004 - B158DRAFT_1023 0.90 +0.2
1,065,004 - B158DRAFT_1023 0.90 +0.1
1,065,006 + B158DRAFT_1023 0.90 +0.0
1,065,029 + +0.0
1,065,037 - -0.2
1,065,287 + B158DRAFT_1024 0.15 -0.9
1,065,287 + B158DRAFT_1024 0.15 +0.4
1,065,290 - B158DRAFT_1024 0.15 -0.2
1,065,290 - B158DRAFT_1024 0.15 +0.4
1,065,329 + B158DRAFT_1024 0.22 -1.2
1,065,330 + B158DRAFT_1024 0.22 +0.1
1,065,330 - B158DRAFT_1024 0.22 -0.2
1,065,349 - B158DRAFT_1024 0.25 -0.6
1,065,401 + B158DRAFT_1024 0.34 -0.3
1,065,401 + B158DRAFT_1024 0.34 -0.5
1,065,409 - B158DRAFT_1024 0.35 -0.0
1,065,425 - B158DRAFT_1024 0.38 +0.1
1,065,447 + B158DRAFT_1024 0.42 +0.1
1,065,489 + B158DRAFT_1024 0.49 +0.2
1,065,532 + B158DRAFT_1024 0.56 -0.2
1,065,544 + B158DRAFT_1024 0.58 -0.9
1,065,608 - B158DRAFT_1024 0.69 +0.5
1,065,613 + B158DRAFT_1024 0.70 +1.0
1,065,648 - B158DRAFT_1024 0.76 -0.2
1,065,728 - B158DRAFT_1024 0.89 -0.2
1,065,785 - -0.2
1,065,904 + +0.1
1,065,943 - B158DRAFT_1025 0.13 +0.3
1,065,943 - B158DRAFT_1025 0.13 -0.5
1,065,943 - B158DRAFT_1025 0.13 +0.2
1,065,945 + B158DRAFT_1025 0.13 +0.0
1,065,945 + B158DRAFT_1025 0.13 -0.6
1,065,946 + B158DRAFT_1025 0.13 -1.5
1,065,946 + B158DRAFT_1025 0.13 -0.2
1,065,947 + B158DRAFT_1025 0.13 +0.3
1,065,954 - B158DRAFT_1025 0.14 -0.1
1,065,954 - B158DRAFT_1025 0.14 -0.2
1,065,959 + B158DRAFT_1025 0.15 -0.3
1,065,987 - B158DRAFT_1025 0.17 -0.2
1,065,996 + B158DRAFT_1025 0.18 -0.1
1,066,014 - B158DRAFT_1025 0.20 +0.9
1,066,014 - B158DRAFT_1025 0.20 -0.1
1,066,020 - B158DRAFT_1025 0.21 -0.1
1,066,026 + B158DRAFT_1025 0.22 -0.2

Or see this region's nucleotide sequence