Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0762

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0760 and B158DRAFT_0761 overlap by 4 nucleotidesB158DRAFT_0761 and B158DRAFT_0762 are separated by 11 nucleotidesB158DRAFT_0762 and B158DRAFT_0763 are separated by 96 nucleotidesB158DRAFT_0763 and B158DRAFT_0764 are separated by 12 nucleotides B158DRAFT_0760: B158DRAFT_0760 - Tfp pilus assembly protein PilO, at 766,818 to 767,447 _0760 B158DRAFT_0761: B158DRAFT_0761 - Tfp pilus assembly protein PilP, at 767,444 to 768,004 _0761 B158DRAFT_0762: B158DRAFT_0762 - type IV pilus secretin (or competence protein) PilQ, at 768,016 to 770,106 _0762 B158DRAFT_0763: B158DRAFT_0763 - shikimate kinase (EC 2.7.1.71), at 770,203 to 770,727 _0763 B158DRAFT_0764: B158DRAFT_0764 - 3-dehydroquinate synthase (EC 4.2.3.4), at 770,740 to 771,822 _0764 Position (kb) 768 769 770 771Strain fitness (log2 ratio) -3 -2 -1 0 1at 767.036 kb on + strand, within B158DRAFT_0760at 767.036 kb on + strand, within B158DRAFT_0760at 767.079 kb on - strand, within B158DRAFT_0760at 767.158 kb on + strand, within B158DRAFT_0760at 767.599 kb on + strand, within B158DRAFT_0761at 767.628 kb on - strand, within B158DRAFT_0761at 767.644 kb on - strand, within B158DRAFT_0761at 767.659 kb on + strand, within B158DRAFT_0761at 767.970 kb on - strandat 767.990 kb on + strandat 768.001 kb on + strandat 768.004 kb on - strandat 768.030 kb on + strandat 768.142 kb on + strandat 768.233 kb on + strand, within B158DRAFT_0762at 768.233 kb on + strand, within B158DRAFT_0762at 768.233 kb on + strand, within B158DRAFT_0762at 768.235 kb on + strand, within B158DRAFT_0762at 768.243 kb on - strand, within B158DRAFT_0762at 768.262 kb on + strand, within B158DRAFT_0762at 768.294 kb on - strand, within B158DRAFT_0762at 768.428 kb on + strand, within B158DRAFT_0762at 768.454 kb on - strand, within B158DRAFT_0762at 768.464 kb on - strand, within B158DRAFT_0762at 768.486 kb on + strand, within B158DRAFT_0762at 768.944 kb on - strand, within B158DRAFT_0762at 768.955 kb on + strand, within B158DRAFT_0762at 769.183 kb on - strand, within B158DRAFT_0762at 769.183 kb on - strand, within B158DRAFT_0762at 769.225 kb on + strand, within B158DRAFT_0762at 769.225 kb on + strand, within B158DRAFT_0762at 769.233 kb on + strand, within B158DRAFT_0762at 769.260 kb on + strand, within B158DRAFT_0762at 769.289 kb on - strand, within B158DRAFT_0762at 769.344 kb on + strand, within B158DRAFT_0762at 769.374 kb on + strand, within B158DRAFT_0762at 769.382 kb on - strand, within B158DRAFT_0762at 769.474 kb on + strand, within B158DRAFT_0762at 769.554 kb on - strand, within B158DRAFT_0762at 769.600 kb on + strand, within B158DRAFT_0762at 769.637 kb on + strand, within B158DRAFT_0762at 769.637 kb on + strand, within B158DRAFT_0762at 769.704 kb on + strand, within B158DRAFT_0762at 769.789 kb on + strand, within B158DRAFT_0762at 769.827 kb on + strand, within B158DRAFT_0762at 769.996 kb on + strandat 770.002 kb on - strandat 770.003 kb on - strandat 770.143 kb on - strandat 770.439 kb on - strand, within B158DRAFT_0763at 770.834 kb on + strandat 770.851 kb on + strand, within B158DRAFT_0764at 770.888 kb on + strand, within B158DRAFT_0764at 770.888 kb on + strand, within B158DRAFT_0764at 770.888 kb on + strand, within B158DRAFT_0764at 770.888 kb on + strand, within B158DRAFT_0764at 770.891 kb on - strand, within B158DRAFT_0764at 770.896 kb on - strand, within B158DRAFT_0764at 770.896 kb on - strand, within B158DRAFT_0764at 770.898 kb on + strand, within B158DRAFT_0764at 770.898 kb on + strand, within B158DRAFT_0764at 770.898 kb on + strand, within B158DRAFT_0764at 770.898 kb on + strand, within B158DRAFT_0764at 770.906 kb on - strand, within B158DRAFT_0764at 770.906 kb on - strand, within B158DRAFT_0764at 770.929 kb on - strand, within B158DRAFT_0764at 770.948 kb on + strand, within B158DRAFT_0764at 770.951 kb on - strand, within B158DRAFT_0764at 770.953 kb on + strand, within B158DRAFT_0764at 770.966 kb on + strand, within B158DRAFT_0764at 770.974 kb on - strand, within B158DRAFT_0764at 770.978 kb on + strand, within B158DRAFT_0764at 771.018 kb on - strand, within B158DRAFT_0764

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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767,036 + B158DRAFT_0760 0.35 +0.3
767,036 + B158DRAFT_0760 0.35 +0.7
767,079 - B158DRAFT_0760 0.41 +1.3
767,158 + B158DRAFT_0760 0.54 +1.1
767,599 + B158DRAFT_0761 0.28 +0.8
767,628 - B158DRAFT_0761 0.33 +0.7
767,644 - B158DRAFT_0761 0.36 +0.6
767,659 + B158DRAFT_0761 0.38 +0.1
767,970 - -0.4
767,990 + -0.4
768,001 + +0.1
768,004 - +0.8
768,030 + +0.2
768,142 + +0.5
768,233 + B158DRAFT_0762 0.10 +0.5
768,233 + B158DRAFT_0762 0.10 +0.7
768,233 + B158DRAFT_0762 0.10 +0.9
768,235 + B158DRAFT_0762 0.10 +0.7
768,243 - B158DRAFT_0762 0.11 +0.4
768,262 + B158DRAFT_0762 0.12 +0.4
768,294 - B158DRAFT_0762 0.13 +0.5
768,428 + B158DRAFT_0762 0.20 +0.2
768,454 - B158DRAFT_0762 0.21 +0.7
768,464 - B158DRAFT_0762 0.21 +0.8
768,486 + B158DRAFT_0762 0.22 +1.2
768,944 - B158DRAFT_0762 0.44 +0.3
768,955 + B158DRAFT_0762 0.45 +0.1
769,183 - B158DRAFT_0762 0.56 +0.2
769,183 - B158DRAFT_0762 0.56 +0.7
769,225 + B158DRAFT_0762 0.58 +0.1
769,225 + B158DRAFT_0762 0.58 -0.4
769,233 + B158DRAFT_0762 0.58 +0.3
769,260 + B158DRAFT_0762 0.59 -0.4
769,289 - B158DRAFT_0762 0.61 -0.5
769,344 + B158DRAFT_0762 0.64 +0.4
769,374 + B158DRAFT_0762 0.65 -0.4
769,382 - B158DRAFT_0762 0.65 -1.7
769,474 + B158DRAFT_0762 0.70 -0.0
769,554 - B158DRAFT_0762 0.74 +1.2
769,600 + B158DRAFT_0762 0.76 +0.2
769,637 + B158DRAFT_0762 0.78 -0.2
769,637 + B158DRAFT_0762 0.78 +0.4
769,704 + B158DRAFT_0762 0.81 +0.3
769,789 + B158DRAFT_0762 0.85 -0.1
769,827 + B158DRAFT_0762 0.87 +0.6
769,996 + +0.0
770,002 - -0.9
770,003 - +0.4
770,143 - -0.6
770,439 - B158DRAFT_0763 0.45 -1.7
770,834 + -2.7
770,851 + B158DRAFT_0764 0.10 -1.9
770,888 + B158DRAFT_0764 0.14 -0.7
770,888 + B158DRAFT_0764 0.14 -2.4
770,888 + B158DRAFT_0764 0.14 -2.7
770,888 + B158DRAFT_0764 0.14 -1.6
770,891 - B158DRAFT_0764 0.14 -2.6
770,896 - B158DRAFT_0764 0.14 -1.6
770,896 - B158DRAFT_0764 0.14 -3.4
770,898 + B158DRAFT_0764 0.15 -2.7
770,898 + B158DRAFT_0764 0.15 -3.4
770,898 + B158DRAFT_0764 0.15 -3.1
770,898 + B158DRAFT_0764 0.15 -3.0
770,906 - B158DRAFT_0764 0.15 -1.2
770,906 - B158DRAFT_0764 0.15 -3.0
770,929 - B158DRAFT_0764 0.17 -2.2
770,948 + B158DRAFT_0764 0.19 -3.4
770,951 - B158DRAFT_0764 0.19 -3.4
770,953 + B158DRAFT_0764 0.20 -1.9
770,966 + B158DRAFT_0764 0.21 -3.5
770,974 - B158DRAFT_0764 0.22 -2.2
770,978 + B158DRAFT_0764 0.22 -2.7
771,018 - B158DRAFT_0764 0.26 -2.8

Or see this region's nucleotide sequence