Experiment: m.b. Nickel (II) chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0549 and B158DRAFT_0550 are separated by 4 nucleotides B158DRAFT_0550 and B158DRAFT_0551 are separated by 78 nucleotides B158DRAFT_0551 and B158DRAFT_0552 overlap by 4 nucleotides B158DRAFT_0552 and B158DRAFT_0553 are separated by 84 nucleotides
B158DRAFT_0549: B158DRAFT_0549 - hypothetical protein, at 555,873 to 556,979
_0549
B158DRAFT_0550: B158DRAFT_0550 - DNA mismatch repair protein MutH, at 556,984 to 557,658
_0550
B158DRAFT_0551: B158DRAFT_0551 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 557,737 to 558,408
_0551
B158DRAFT_0552: B158DRAFT_0552 - hypothetical protein, at 558,405 to 558,782
_0552
B158DRAFT_0553: B158DRAFT_0553 - 16S RNA G1207 methylase RsmC, at 558,867 to 559,466
_0553
Position (kb) 557
558
559 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 557.018 kb on - strand at 557.031 kb on + strand at 557.041 kb on - strand at 557.095 kb on - strand, within B158DRAFT_0550 at 557.205 kb on - strand, within B158DRAFT_0550 at 557.253 kb on - strand, within B158DRAFT_0550 at 557.279 kb on - strand, within B158DRAFT_0550 at 557.279 kb on - strand, within B158DRAFT_0550 at 557.362 kb on + strand, within B158DRAFT_0550 at 557.379 kb on + strand, within B158DRAFT_0550 at 557.379 kb on + strand, within B158DRAFT_0550 at 557.379 kb on + strand, within B158DRAFT_0550 at 557.379 kb on + strand, within B158DRAFT_0550 at 557.450 kb on - strand, within B158DRAFT_0550 at 557.480 kb on - strand, within B158DRAFT_0550 at 557.489 kb on - strand, within B158DRAFT_0550 at 557.525 kb on - strand, within B158DRAFT_0550 at 557.634 kb on + strand at 557.634 kb on + strand at 557.644 kb on + strand at 557.647 kb on - strand at 557.753 kb on + strand at 557.753 kb on + strand at 557.754 kb on + strand at 557.788 kb on + strand at 557.802 kb on + strand at 557.802 kb on + strand at 557.828 kb on + strand, within B158DRAFT_0551 at 558.011 kb on + strand, within B158DRAFT_0551 at 558.019 kb on - strand, within B158DRAFT_0551 at 558.284 kb on + strand, within B158DRAFT_0551 at 558.293 kb on + strand, within B158DRAFT_0551 at 558.301 kb on - strand, within B158DRAFT_0551 at 558.301 kb on - strand, within B158DRAFT_0551 at 558.311 kb on + strand, within B158DRAFT_0551 at 558.335 kb on + strand, within B158DRAFT_0551 at 558.345 kb on + strand at 558.350 kb on + strand at 558.372 kb on + strand at 558.455 kb on + strand, within B158DRAFT_0552 at 558.556 kb on - strand, within B158DRAFT_0552 at 558.562 kb on + strand, within B158DRAFT_0552 at 558.654 kb on + strand, within B158DRAFT_0552 at 558.747 kb on + strand at 558.779 kb on + strand at 558.787 kb on - strand at 558.933 kb on - strand, within B158DRAFT_0553 at 558.963 kb on + strand, within B158DRAFT_0553 at 558.971 kb on - strand, within B158DRAFT_0553 at 559.047 kb on + strand, within B158DRAFT_0553 at 559.055 kb on - strand, within B158DRAFT_0553 at 559.061 kb on + strand, within B158DRAFT_0553 at 559.061 kb on + strand, within B158DRAFT_0553 at 559.070 kb on + strand, within B158DRAFT_0553 at 559.070 kb on + strand, within B158DRAFT_0553 at 559.089 kb on + strand, within B158DRAFT_0553 at 559.125 kb on - strand, within B158DRAFT_0553 at 559.154 kb on - strand, within B158DRAFT_0553 at 559.159 kb on - strand, within B158DRAFT_0553 at 559.213 kb on - strand, within B158DRAFT_0553 at 559.217 kb on + strand, within B158DRAFT_0553 at 559.248 kb on - strand, within B158DRAFT_0553 at 559.350 kb on + strand, within B158DRAFT_0553 at 559.358 kb on - strand, within B158DRAFT_0553 at 559.358 kb on - strand, within B158DRAFT_0553 at 559.358 kb on - strand, within B158DRAFT_0553 at 559.384 kb on + strand, within B158DRAFT_0553 at 559.394 kb on + strand, within B158DRAFT_0553 at 559.402 kb on - strand, within B158DRAFT_0553
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM remove 557,018 - +0.0 557,031 + -0.5 557,041 - +0.1 557,095 - B158DRAFT_0550 0.16 -0.0 557,205 - B158DRAFT_0550 0.33 -0.2 557,253 - B158DRAFT_0550 0.40 +0.0 557,279 - B158DRAFT_0550 0.44 +0.1 557,279 - B158DRAFT_0550 0.44 -0.1 557,362 + B158DRAFT_0550 0.56 +0.0 557,379 + B158DRAFT_0550 0.59 -1.0 557,379 + B158DRAFT_0550 0.59 +0.0 557,379 + B158DRAFT_0550 0.59 -0.0 557,379 + B158DRAFT_0550 0.59 +0.2 557,450 - B158DRAFT_0550 0.69 +0.6 557,480 - B158DRAFT_0550 0.73 -0.5 557,489 - B158DRAFT_0550 0.75 -0.5 557,525 - B158DRAFT_0550 0.80 -0.1 557,634 + +0.2 557,634 + +0.9 557,644 + -0.1 557,647 - -0.1 557,753 + -1.9 557,753 + -1.7 557,754 + -2.6 557,788 + -3.8 557,802 + -3.3 557,802 + -1.8 557,828 + B158DRAFT_0551 0.14 -2.1 558,011 + B158DRAFT_0551 0.41 -2.5 558,019 - B158DRAFT_0551 0.42 -1.1 558,284 + B158DRAFT_0551 0.81 -1.1 558,293 + B158DRAFT_0551 0.83 -0.7 558,301 - B158DRAFT_0551 0.84 -2.0 558,301 - B158DRAFT_0551 0.84 -1.9 558,311 + B158DRAFT_0551 0.85 -2.7 558,335 + B158DRAFT_0551 0.89 -1.7 558,345 + -1.4 558,350 + -0.5 558,372 + -1.5 558,455 + B158DRAFT_0552 0.13 +1.1 558,556 - B158DRAFT_0552 0.40 -0.3 558,562 + B158DRAFT_0552 0.42 +0.4 558,654 + B158DRAFT_0552 0.66 +0.0 558,747 + -0.5 558,779 + -0.2 558,787 - +0.1 558,933 - B158DRAFT_0553 0.11 +0.1 558,963 + B158DRAFT_0553 0.16 -0.0 558,971 - B158DRAFT_0553 0.17 -0.6 559,047 + B158DRAFT_0553 0.30 +0.4 559,055 - B158DRAFT_0553 0.31 +0.3 559,061 + B158DRAFT_0553 0.32 +0.0 559,061 + B158DRAFT_0553 0.32 -0.2 559,070 + B158DRAFT_0553 0.34 -0.1 559,070 + B158DRAFT_0553 0.34 -0.3 559,089 + B158DRAFT_0553 0.37 +0.4 559,125 - B158DRAFT_0553 0.43 -0.7 559,154 - B158DRAFT_0553 0.48 -0.2 559,159 - B158DRAFT_0553 0.49 +0.2 559,213 - B158DRAFT_0553 0.58 -0.8 559,217 + B158DRAFT_0553 0.58 -0.4 559,248 - B158DRAFT_0553 0.64 -0.4 559,350 + B158DRAFT_0553 0.81 -0.2 559,358 - B158DRAFT_0553 0.82 -2.3 559,358 - B158DRAFT_0553 0.82 -0.1 559,358 - B158DRAFT_0553 0.82 -0.3 559,384 + B158DRAFT_0553 0.86 -0.3 559,394 + B158DRAFT_0553 0.88 +0.2 559,402 - B158DRAFT_0553 0.89 +0.2
Or see this region's nucleotide sequence