Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2394

Experiment: m.b. Polymyxin B sulfate 0.0019531 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2392 and B158DRAFT_2393 are separated by 0 nucleotidesB158DRAFT_2393 and B158DRAFT_2394 are separated by 21 nucleotidesB158DRAFT_2394 and B158DRAFT_2395 are separated by 57 nucleotides B158DRAFT_2392: B158DRAFT_2392 - Uncharacterized low-complexity proteins, at 561,077 to 562,828 _2392 B158DRAFT_2393: B158DRAFT_2393 - hypothetical protein, at 562,829 to 563,716 _2393 B158DRAFT_2394: B158DRAFT_2394 - diguanylate cyclase (GGDEF) domain, at 563,738 to 566,089 _2394 B158DRAFT_2395: B158DRAFT_2395 - phosphoenolpyruvate carboxykinase (ATP), at 566,147 to 567,748 _2395 Position (kb) 563 564 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 562.804 kb on - strandat 562.807 kb on + strandat 562.966 kb on + strand, within B158DRAFT_2393at 562.979 kb on - strand, within B158DRAFT_2393at 563.053 kb on + strand, within B158DRAFT_2393at 563.053 kb on + strand, within B158DRAFT_2393at 563.053 kb on + strand, within B158DRAFT_2393at 563.053 kb on + strand, within B158DRAFT_2393at 563.061 kb on - strand, within B158DRAFT_2393at 563.302 kb on + strand, within B158DRAFT_2393at 563.310 kb on - strand, within B158DRAFT_2393at 563.350 kb on - strand, within B158DRAFT_2393at 563.390 kb on - strand, within B158DRAFT_2393at 563.390 kb on - strand, within B158DRAFT_2393at 563.432 kb on - strand, within B158DRAFT_2393at 563.453 kb on - strand, within B158DRAFT_2393at 563.453 kb on - strand, within B158DRAFT_2393at 563.455 kb on + strand, within B158DRAFT_2393at 563.505 kb on - strand, within B158DRAFT_2393at 563.522 kb on + strand, within B158DRAFT_2393at 563.537 kb on + strand, within B158DRAFT_2393at 563.537 kb on + strand, within B158DRAFT_2393at 563.545 kb on - strand, within B158DRAFT_2393at 563.560 kb on + strand, within B158DRAFT_2393at 563.570 kb on - strand, within B158DRAFT_2393at 563.579 kb on + strand, within B158DRAFT_2393at 563.677 kb on + strandat 563.677 kb on + strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.720 kb on - strandat 563.841 kb on + strandat 563.953 kb on + strandat 564.016 kb on + strand, within B158DRAFT_2394at 564.019 kb on - strand, within B158DRAFT_2394at 564.025 kb on + strand, within B158DRAFT_2394at 564.031 kb on + strand, within B158DRAFT_2394at 564.165 kb on + strand, within B158DRAFT_2394at 564.275 kb on + strand, within B158DRAFT_2394at 564.275 kb on + strand, within B158DRAFT_2394at 564.275 kb on + strand, within B158DRAFT_2394at 564.275 kb on + strand, within B158DRAFT_2394at 564.283 kb on - strand, within B158DRAFT_2394at 564.544 kb on + strand, within B158DRAFT_2394at 564.724 kb on - strand, within B158DRAFT_2394at 564.724 kb on - strand, within B158DRAFT_2394at 564.762 kb on - strand, within B158DRAFT_2394at 564.796 kb on - strand, within B158DRAFT_2394at 564.796 kb on - strand, within B158DRAFT_2394at 564.851 kb on + strand, within B158DRAFT_2394at 564.870 kb on + strand, within B158DRAFT_2394at 564.917 kb on - strand, within B158DRAFT_2394at 564.932 kb on - strand, within B158DRAFT_2394at 565.042 kb on + strand, within B158DRAFT_2394at 565.060 kb on + strand, within B158DRAFT_2394at 565.068 kb on - strand, within B158DRAFT_2394at 565.068 kb on - strand, within B158DRAFT_2394at 565.068 kb on - strand, within B158DRAFT_2394at 565.068 kb on - strand, within B158DRAFT_2394at 565.080 kb on + strand, within B158DRAFT_2394at 565.226 kb on + strand, within B158DRAFT_2394at 565.347 kb on - strand, within B158DRAFT_2394at 565.452 kb on - strand, within B158DRAFT_2394at 565.539 kb on + strand, within B158DRAFT_2394at 565.571 kb on + strand, within B158DRAFT_2394at 565.571 kb on + strand, within B158DRAFT_2394at 565.571 kb on + strand, within B158DRAFT_2394at 565.571 kb on + strand, within B158DRAFT_2394at 565.647 kb on + strand, within B158DRAFT_2394at 565.704 kb on + strand, within B158DRAFT_2394at 565.931 kb on + strandat 566.065 kb on - strandat 566.176 kb on - strandat 566.300 kb on + strandat 566.363 kb on + strand, within B158DRAFT_2395at 566.365 kb on + strand, within B158DRAFT_2395at 566.368 kb on + strand, within B158DRAFT_2395at 566.371 kb on - strand, within B158DRAFT_2395at 566.426 kb on - strand, within B158DRAFT_2395at 566.446 kb on - strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.456 kb on - strand, within B158DRAFT_2395at 566.456 kb on - strand, within B158DRAFT_2395at 566.456 kb on - strand, within B158DRAFT_2395at 566.500 kb on + strand, within B158DRAFT_2395at 566.558 kb on + strand, within B158DRAFT_2395at 566.593 kb on - strand, within B158DRAFT_2395at 566.625 kb on - strand, within B158DRAFT_2395at 566.632 kb on - strand, within B158DRAFT_2395at 566.718 kb on + strand, within B158DRAFT_2395at 566.718 kb on + strand, within B158DRAFT_2395at 566.726 kb on - strand, within B158DRAFT_2395at 566.990 kb on - strand, within B158DRAFT_2395at 566.990 kb on - strand, within B158DRAFT_2395at 566.992 kb on - strand, within B158DRAFT_2395at 567.014 kb on - strand, within B158DRAFT_2395at 567.071 kb on + strand, within B158DRAFT_2395at 567.071 kb on + strand, within B158DRAFT_2395at 567.084 kb on - strand, within B158DRAFT_2395at 567.084 kb on - strand, within B158DRAFT_2395

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0019531 mg/ml
remove
562,804 - +0.3
562,807 + -0.1
562,966 + B158DRAFT_2393 0.15 +0.9
562,979 - B158DRAFT_2393 0.17 +0.4
563,053 + B158DRAFT_2393 0.25 -0.4
563,053 + B158DRAFT_2393 0.25 +0.3
563,053 + B158DRAFT_2393 0.25 +0.2
563,053 + B158DRAFT_2393 0.25 +0.6
563,061 - B158DRAFT_2393 0.26 +0.3
563,302 + B158DRAFT_2393 0.53 +0.2
563,310 - B158DRAFT_2393 0.54 -0.1
563,350 - B158DRAFT_2393 0.59 -0.4
563,390 - B158DRAFT_2393 0.63 +0.5
563,390 - B158DRAFT_2393 0.63 +0.4
563,432 - B158DRAFT_2393 0.68 -0.2
563,453 - B158DRAFT_2393 0.70 -0.3
563,453 - B158DRAFT_2393 0.70 +0.6
563,455 + B158DRAFT_2393 0.70 +0.5
563,505 - B158DRAFT_2393 0.76 -0.1
563,522 + B158DRAFT_2393 0.78 +3.4
563,537 + B158DRAFT_2393 0.80 +0.5
563,537 + B158DRAFT_2393 0.80 +0.4
563,545 - B158DRAFT_2393 0.81 +0.1
563,560 + B158DRAFT_2393 0.82 +0.4
563,570 - B158DRAFT_2393 0.83 +0.5
563,579 + B158DRAFT_2393 0.84 +0.3
563,677 + +0.4
563,677 + -0.1
563,685 - +0.4
563,685 - -0.4
563,685 - -0.2
563,685 - +0.1
563,685 - +0.2
563,685 - -0.2
563,720 - +0.3
563,841 + -0.3
563,953 + +1.0
564,016 + B158DRAFT_2394 0.12 +0.1
564,019 - B158DRAFT_2394 0.12 -0.1
564,025 + B158DRAFT_2394 0.12 +0.3
564,031 + B158DRAFT_2394 0.12 -0.2
564,165 + B158DRAFT_2394 0.18 -0.5
564,275 + B158DRAFT_2394 0.23 +0.3
564,275 + B158DRAFT_2394 0.23 +0.8
564,275 + B158DRAFT_2394 0.23 +0.4
564,275 + B158DRAFT_2394 0.23 +0.4
564,283 - B158DRAFT_2394 0.23 -0.3
564,544 + B158DRAFT_2394 0.34 +0.4
564,724 - B158DRAFT_2394 0.42 +0.7
564,724 - B158DRAFT_2394 0.42 -0.1
564,762 - B158DRAFT_2394 0.44 +0.3
564,796 - B158DRAFT_2394 0.45 -0.3
564,796 - B158DRAFT_2394 0.45 -0.2
564,851 + B158DRAFT_2394 0.47 +0.1
564,870 + B158DRAFT_2394 0.48 +0.8
564,917 - B158DRAFT_2394 0.50 -1.8
564,932 - B158DRAFT_2394 0.51 -0.8
565,042 + B158DRAFT_2394 0.55 -0.6
565,060 + B158DRAFT_2394 0.56 -0.5
565,068 - B158DRAFT_2394 0.57 +0.4
565,068 - B158DRAFT_2394 0.57 -0.1
565,068 - B158DRAFT_2394 0.57 +0.3
565,068 - B158DRAFT_2394 0.57 +0.5
565,080 + B158DRAFT_2394 0.57 +0.2
565,226 + B158DRAFT_2394 0.63 -0.5
565,347 - B158DRAFT_2394 0.68 +0.1
565,452 - B158DRAFT_2394 0.73 +0.2
565,539 + B158DRAFT_2394 0.77 -0.4
565,571 + B158DRAFT_2394 0.78 +0.1
565,571 + B158DRAFT_2394 0.78 -0.3
565,571 + B158DRAFT_2394 0.78 -0.3
565,571 + B158DRAFT_2394 0.78 -0.3
565,647 + B158DRAFT_2394 0.81 -0.0
565,704 + B158DRAFT_2394 0.84 -0.2
565,931 + -0.1
566,065 - -0.5
566,176 - -0.3
566,300 + -2.8
566,363 + B158DRAFT_2395 0.13 -0.4
566,365 + B158DRAFT_2395 0.14 -0.1
566,368 + B158DRAFT_2395 0.14 -1.4
566,371 - B158DRAFT_2395 0.14 -1.0
566,426 - B158DRAFT_2395 0.17 -2.1
566,446 - B158DRAFT_2395 0.19 -0.1
566,448 + B158DRAFT_2395 0.19 +0.3
566,448 + B158DRAFT_2395 0.19 -0.0
566,448 + B158DRAFT_2395 0.19 -0.3
566,448 + B158DRAFT_2395 0.19 -0.1
566,448 + B158DRAFT_2395 0.19 -0.2
566,448 + B158DRAFT_2395 0.19 +0.1
566,456 - B158DRAFT_2395 0.19 +0.1
566,456 - B158DRAFT_2395 0.19 -0.1
566,456 - B158DRAFT_2395 0.19 -0.9
566,500 + B158DRAFT_2395 0.22 -0.2
566,558 + B158DRAFT_2395 0.26 +0.2
566,593 - B158DRAFT_2395 0.28 +0.1
566,625 - B158DRAFT_2395 0.30 +0.4
566,632 - B158DRAFT_2395 0.30 +0.1
566,718 + B158DRAFT_2395 0.36 -0.2
566,718 + B158DRAFT_2395 0.36 -0.3
566,726 - B158DRAFT_2395 0.36 +0.5
566,990 - B158DRAFT_2395 0.53 -0.9
566,990 - B158DRAFT_2395 0.53 +0.0
566,992 - B158DRAFT_2395 0.53 +0.5
567,014 - B158DRAFT_2395 0.54 +1.5
567,071 + B158DRAFT_2395 0.58 +0.0
567,071 + B158DRAFT_2395 0.58 +0.3
567,084 - B158DRAFT_2395 0.58 -0.5
567,084 - B158DRAFT_2395 0.58 +0.3

Or see this region's nucleotide sequence