Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1406

Experiment: m.b. Polymyxin B sulfate 0.0019531 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1405 and B158DRAFT_1406 are separated by 11 nucleotidesB158DRAFT_1406 and B158DRAFT_1407 are separated by 220 nucleotides B158DRAFT_1405: B158DRAFT_1405 - Cation/multidrug efflux pump, at 1,452,048 to 1,455,233 _1405 B158DRAFT_1406: B158DRAFT_1406 - RND family efflux transporter, MFP subunit, at 1,455,245 to 1,456,462 _1406 B158DRAFT_1407: B158DRAFT_1407 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 1,456,683 to 1,458,731 _1407 Position (kb) 1455 1456 1457Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1454.317 kb on + strand, within B158DRAFT_1405at 1454.330 kb on - strand, within B158DRAFT_1405at 1454.369 kb on + strand, within B158DRAFT_1405at 1454.369 kb on + strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.420 kb on + strand, within B158DRAFT_1405at 1454.428 kb on - strand, within B158DRAFT_1405at 1454.513 kb on - strand, within B158DRAFT_1405at 1454.514 kb on + strand, within B158DRAFT_1405at 1454.558 kb on + strand, within B158DRAFT_1405at 1454.577 kb on - strand, within B158DRAFT_1405at 1454.616 kb on + strand, within B158DRAFT_1405at 1454.648 kb on + strand, within B158DRAFT_1405at 1454.681 kb on + strand, within B158DRAFT_1405at 1454.681 kb on + strand, within B158DRAFT_1405at 1454.689 kb on + strand, within B158DRAFT_1405at 1454.689 kb on - strand, within B158DRAFT_1405at 1454.696 kb on - strand, within B158DRAFT_1405at 1454.756 kb on + strand, within B158DRAFT_1405at 1454.764 kb on - strand, within B158DRAFT_1405at 1454.849 kb on + strand, within B158DRAFT_1405at 1454.907 kb on - strand, within B158DRAFT_1405at 1455.014 kb on + strandat 1455.035 kb on + strandat 1455.073 kb on - strandat 1455.073 kb on - strandat 1455.073 kb on - strandat 1455.232 kb on - strandat 1455.264 kb on + strandat 1455.269 kb on + strandat 1455.269 kb on + strandat 1455.269 kb on + strandat 1455.269 kb on + strandat 1455.272 kb on + strandat 1455.277 kb on - strandat 1455.277 kb on - strandat 1455.306 kb on + strandat 1455.361 kb on - strandat 1455.521 kb on + strand, within B158DRAFT_1406at 1455.717 kb on + strand, within B158DRAFT_1406at 1455.767 kb on + strand, within B158DRAFT_1406at 1455.791 kb on + strand, within B158DRAFT_1406at 1455.925 kb on + strand, within B158DRAFT_1406at 1455.935 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.964 kb on - strand, within B158DRAFT_1406at 1455.964 kb on - strand, within B158DRAFT_1406at 1455.964 kb on - strand, within B158DRAFT_1406at 1455.987 kb on + strand, within B158DRAFT_1406at 1456.034 kb on - strand, within B158DRAFT_1406at 1456.058 kb on + strand, within B158DRAFT_1406at 1456.058 kb on + strand, within B158DRAFT_1406at 1456.068 kb on - strand, within B158DRAFT_1406at 1456.077 kb on + strand, within B158DRAFT_1406at 1456.077 kb on + strand, within B158DRAFT_1406at 1456.077 kb on + strand, within B158DRAFT_1406at 1456.077 kb on + strand, within B158DRAFT_1406at 1456.085 kb on - strand, within B158DRAFT_1406at 1456.085 kb on - strand, within B158DRAFT_1406at 1456.098 kb on - strand, within B158DRAFT_1406at 1456.100 kb on - strand, within B158DRAFT_1406at 1456.162 kb on + strand, within B158DRAFT_1406at 1456.258 kb on + strand, within B158DRAFT_1406at 1456.258 kb on + strand, within B158DRAFT_1406at 1456.265 kb on + strand, within B158DRAFT_1406at 1456.266 kb on - strand, within B158DRAFT_1406at 1456.266 kb on - strand, within B158DRAFT_1406at 1456.266 kb on - strand, within B158DRAFT_1406at 1456.266 kb on - strand, within B158DRAFT_1406at 1456.273 kb on - strand, within B158DRAFT_1406at 1456.280 kb on + strand, within B158DRAFT_1406at 1456.285 kb on + strand, within B158DRAFT_1406at 1456.304 kb on + strand, within B158DRAFT_1406at 1456.314 kb on + strand, within B158DRAFT_1406at 1456.386 kb on - strandat 1456.386 kb on - strandat 1456.520 kb on - strandat 1456.544 kb on - strandat 1456.544 kb on - strandat 1456.592 kb on - strandat 1456.809 kb on + strandat 1456.828 kb on - strandat 1456.855 kb on + strandat 1456.860 kb on - strandat 1456.863 kb on - strandat 1456.863 kb on - strandat 1456.877 kb on - strandat 1456.926 kb on - strand, within B158DRAFT_1407at 1456.954 kb on - strand, within B158DRAFT_1407at 1456.981 kb on + strand, within B158DRAFT_1407at 1456.983 kb on + strand, within B158DRAFT_1407at 1456.991 kb on + strand, within B158DRAFT_1407at 1456.999 kb on + strand, within B158DRAFT_1407at 1457.070 kb on - strand, within B158DRAFT_1407at 1457.070 kb on - strand, within B158DRAFT_1407at 1457.070 kb on - strand, within B158DRAFT_1407at 1457.085 kb on + strand, within B158DRAFT_1407at 1457.121 kb on + strand, within B158DRAFT_1407at 1457.121 kb on + strand, within B158DRAFT_1407at 1457.129 kb on - strand, within B158DRAFT_1407at 1457.129 kb on - strand, within B158DRAFT_1407at 1457.129 kb on - strand, within B158DRAFT_1407at 1457.129 kb on - strand, within B158DRAFT_1407at 1457.129 kb on - strand, within B158DRAFT_1407at 1457.129 kb on - strand, within B158DRAFT_1407at 1457.157 kb on + strand, within B158DRAFT_1407at 1457.171 kb on - strand, within B158DRAFT_1407at 1457.212 kb on - strand, within B158DRAFT_1407at 1457.240 kb on + strand, within B158DRAFT_1407at 1457.243 kb on + strand, within B158DRAFT_1407at 1457.243 kb on + strand, within B158DRAFT_1407at 1457.243 kb on + strand, within B158DRAFT_1407at 1457.280 kb on + strand, within B158DRAFT_1407at 1457.280 kb on + strand, within B158DRAFT_1407at 1457.290 kb on + strand, within B158DRAFT_1407at 1457.293 kb on - strand, within B158DRAFT_1407at 1457.295 kb on + strand, within B158DRAFT_1407at 1457.298 kb on - strand, within B158DRAFT_1407at 1457.337 kb on + strand, within B158DRAFT_1407at 1457.409 kb on - strand, within B158DRAFT_1407at 1457.409 kb on - strand, within B158DRAFT_1407at 1457.456 kb on + strand, within B158DRAFT_1407at 1457.456 kb on + strand, within B158DRAFT_1407

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0019531 mg/ml
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1,454,317 + B158DRAFT_1405 0.71 -1.7
1,454,330 - B158DRAFT_1405 0.72 -2.9
1,454,369 + B158DRAFT_1405 0.73 -2.8
1,454,369 + B158DRAFT_1405 0.73 -1.9
1,454,377 - B158DRAFT_1405 0.73 -1.8
1,454,377 - B158DRAFT_1405 0.73 -3.1
1,454,377 - B158DRAFT_1405 0.73 -1.1
1,454,377 - B158DRAFT_1405 0.73 -2.7
1,454,377 - B158DRAFT_1405 0.73 -1.6
1,454,377 - B158DRAFT_1405 0.73 -0.8
1,454,377 - B158DRAFT_1405 0.73 -1.2
1,454,377 - B158DRAFT_1405 0.73 -3.6
1,454,420 + B158DRAFT_1405 0.74 -1.4
1,454,428 - B158DRAFT_1405 0.75 -1.8
1,454,513 - B158DRAFT_1405 0.77 -2.8
1,454,514 + B158DRAFT_1405 0.77 -2.4
1,454,558 + B158DRAFT_1405 0.79 -1.8
1,454,577 - B158DRAFT_1405 0.79 -1.7
1,454,616 + B158DRAFT_1405 0.81 -2.0
1,454,648 + B158DRAFT_1405 0.82 -1.1
1,454,681 + B158DRAFT_1405 0.83 -2.3
1,454,681 + B158DRAFT_1405 0.83 -1.8
1,454,689 + B158DRAFT_1405 0.83 -2.5
1,454,689 - B158DRAFT_1405 0.83 -4.3
1,454,696 - B158DRAFT_1405 0.83 -1.1
1,454,756 + B158DRAFT_1405 0.85 -1.4
1,454,764 - B158DRAFT_1405 0.85 -1.3
1,454,849 + B158DRAFT_1405 0.88 -1.9
1,454,907 - B158DRAFT_1405 0.90 -3.0
1,455,014 + -1.9
1,455,035 + -0.7
1,455,073 - -3.4
1,455,073 - -2.1
1,455,073 - -2.3
1,455,232 - -2.1
1,455,264 + -1.4
1,455,269 + -3.1
1,455,269 + -0.9
1,455,269 + -1.6
1,455,269 + -3.2
1,455,272 + -1.6
1,455,277 - -1.4
1,455,277 - -3.0
1,455,306 + -2.8
1,455,361 - -0.2
1,455,521 + B158DRAFT_1406 0.23 -4.3
1,455,717 + B158DRAFT_1406 0.39 -1.8
1,455,767 + B158DRAFT_1406 0.43 -2.4
1,455,791 + B158DRAFT_1406 0.45 -3.1
1,455,925 + B158DRAFT_1406 0.56 -0.8
1,455,935 + B158DRAFT_1406 0.57 -2.0
1,455,956 + B158DRAFT_1406 0.58 -1.9
1,455,956 + B158DRAFT_1406 0.58 -2.1
1,455,956 + B158DRAFT_1406 0.58 -1.9
1,455,956 + B158DRAFT_1406 0.58 -1.7
1,455,956 + B158DRAFT_1406 0.58 -2.7
1,455,964 - B158DRAFT_1406 0.59 -1.0
1,455,964 - B158DRAFT_1406 0.59 -3.2
1,455,964 - B158DRAFT_1406 0.59 -2.5
1,455,987 + B158DRAFT_1406 0.61 -1.2
1,456,034 - B158DRAFT_1406 0.65 -1.8
1,456,058 + B158DRAFT_1406 0.67 -3.1
1,456,058 + B158DRAFT_1406 0.67 -0.3
1,456,068 - B158DRAFT_1406 0.68 -1.3
1,456,077 + B158DRAFT_1406 0.68 -1.1
1,456,077 + B158DRAFT_1406 0.68 -2.2
1,456,077 + B158DRAFT_1406 0.68 -4.1
1,456,077 + B158DRAFT_1406 0.68 -1.2
1,456,085 - B158DRAFT_1406 0.69 -2.6
1,456,085 - B158DRAFT_1406 0.69 -2.7
1,456,098 - B158DRAFT_1406 0.70 -3.5
1,456,100 - B158DRAFT_1406 0.70 -4.1
1,456,162 + B158DRAFT_1406 0.75 -1.8
1,456,258 + B158DRAFT_1406 0.83 -1.9
1,456,258 + B158DRAFT_1406 0.83 -3.9
1,456,265 + B158DRAFT_1406 0.84 -1.7
1,456,266 - B158DRAFT_1406 0.84 -3.0
1,456,266 - B158DRAFT_1406 0.84 -2.1
1,456,266 - B158DRAFT_1406 0.84 -0.7
1,456,266 - B158DRAFT_1406 0.84 -2.7
1,456,273 - B158DRAFT_1406 0.84 -0.9
1,456,280 + B158DRAFT_1406 0.85 -2.5
1,456,285 + B158DRAFT_1406 0.85 -1.2
1,456,304 + B158DRAFT_1406 0.87 -2.7
1,456,314 + B158DRAFT_1406 0.88 -3.4
1,456,386 - -2.6
1,456,386 - -3.5
1,456,520 - -1.9
1,456,544 - -0.6
1,456,544 - -2.3
1,456,592 - -0.5
1,456,809 + -1.0
1,456,828 - -0.0
1,456,855 + -0.2
1,456,860 - -0.5
1,456,863 - -0.4
1,456,863 - -0.6
1,456,877 - -0.2
1,456,926 - B158DRAFT_1407 0.12 +0.1
1,456,954 - B158DRAFT_1407 0.13 +0.2
1,456,981 + B158DRAFT_1407 0.15 -1.6
1,456,983 + B158DRAFT_1407 0.15 -0.8
1,456,991 + B158DRAFT_1407 0.15 -0.2
1,456,999 + B158DRAFT_1407 0.15 +0.2
1,457,070 - B158DRAFT_1407 0.19 +0.5
1,457,070 - B158DRAFT_1407 0.19 -0.2
1,457,070 - B158DRAFT_1407 0.19 +0.5
1,457,085 + B158DRAFT_1407 0.20 -0.8
1,457,121 + B158DRAFT_1407 0.21 -0.4
1,457,121 + B158DRAFT_1407 0.21 -0.2
1,457,129 - B158DRAFT_1407 0.22 -1.6
1,457,129 - B158DRAFT_1407 0.22 +0.5
1,457,129 - B158DRAFT_1407 0.22 -0.3
1,457,129 - B158DRAFT_1407 0.22 -0.8
1,457,129 - B158DRAFT_1407 0.22 +0.4
1,457,129 - B158DRAFT_1407 0.22 -0.0
1,457,157 + B158DRAFT_1407 0.23 -0.3
1,457,171 - B158DRAFT_1407 0.24 +0.2
1,457,212 - B158DRAFT_1407 0.26 -1.8
1,457,240 + B158DRAFT_1407 0.27 +0.3
1,457,243 + B158DRAFT_1407 0.27 -0.2
1,457,243 + B158DRAFT_1407 0.27 +0.0
1,457,243 + B158DRAFT_1407 0.27 -0.4
1,457,280 + B158DRAFT_1407 0.29 -0.8
1,457,280 + B158DRAFT_1407 0.29 -0.3
1,457,290 + B158DRAFT_1407 0.30 +0.8
1,457,293 - B158DRAFT_1407 0.30 -0.8
1,457,295 + B158DRAFT_1407 0.30 -0.1
1,457,298 - B158DRAFT_1407 0.30 -0.2
1,457,337 + B158DRAFT_1407 0.32 -0.2
1,457,409 - B158DRAFT_1407 0.35 -0.6
1,457,409 - B158DRAFT_1407 0.35 -0.7
1,457,456 + B158DRAFT_1407 0.38 -0.2
1,457,456 + B158DRAFT_1407 0.38 -0.2

Or see this region's nucleotide sequence