Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0505

Experiment: m.b. Polymyxin B sulfate 0.0019531 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0503 and B158DRAFT_0504 are separated by 130 nucleotidesB158DRAFT_0504 and B158DRAFT_0505 are separated by 145 nucleotidesB158DRAFT_0505 and B158DRAFT_0506 are separated by 61 nucleotidesB158DRAFT_0506 and B158DRAFT_0507 are separated by 107 nucleotides B158DRAFT_0503: B158DRAFT_0503 - ribosome biogenesis GTP-binding protein YsxC/EngB, at 506,963 to 507,580 _0503 B158DRAFT_0504: B158DRAFT_0504 - Cytochrome c553, at 507,711 to 508,328 _0504 B158DRAFT_0505: B158DRAFT_0505 - Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis, at 508,474 to 509,064 _0505 B158DRAFT_0506: B158DRAFT_0506 - Predicted membrane protein, at 509,126 to 509,854 _0506 B158DRAFT_0507: B158DRAFT_0507 - Highly conserved protein containing a thioredoxin domain, at 509,962 to 512,034 _0507 Position (kb) 508 509 510Strain fitness (log2 ratio) -3 -2 -1 0 1at 507.700 kb on - strandat 507.779 kb on + strand, within B158DRAFT_0504at 507.787 kb on + strand, within B158DRAFT_0504at 507.795 kb on - strand, within B158DRAFT_0504at 507.836 kb on - strand, within B158DRAFT_0504at 508.087 kb on + strand, within B158DRAFT_0504at 508.110 kb on - strand, within B158DRAFT_0504at 508.185 kb on + strand, within B158DRAFT_0504at 508.212 kb on + strand, within B158DRAFT_0504at 508.254 kb on - strand, within B158DRAFT_0504at 508.279 kb on - strandat 508.279 kb on - strandat 508.311 kb on + strandat 508.328 kb on + strandat 508.352 kb on - strandat 508.411 kb on + strandat 508.421 kb on - strandat 508.510 kb on + strandat 508.522 kb on + strandat 508.530 kb on - strandat 508.549 kb on - strand, within B158DRAFT_0505at 508.554 kb on - strand, within B158DRAFT_0505at 508.605 kb on + strand, within B158DRAFT_0505at 508.613 kb on - strand, within B158DRAFT_0505at 508.639 kb on - strand, within B158DRAFT_0505at 508.689 kb on - strand, within B158DRAFT_0505at 508.722 kb on - strand, within B158DRAFT_0505at 508.737 kb on + strand, within B158DRAFT_0505at 508.745 kb on - strand, within B158DRAFT_0505at 508.745 kb on - strand, within B158DRAFT_0505at 508.745 kb on - strand, within B158DRAFT_0505at 508.827 kb on + strand, within B158DRAFT_0505at 508.827 kb on + strand, within B158DRAFT_0505at 508.835 kb on - strand, within B158DRAFT_0505at 508.835 kb on - strand, within B158DRAFT_0505at 508.835 kb on - strand, within B158DRAFT_0505at 508.835 kb on - strand, within B158DRAFT_0505at 508.835 kb on - strand, within B158DRAFT_0505at 508.925 kb on + strand, within B158DRAFT_0505at 508.933 kb on - strand, within B158DRAFT_0505at 508.933 kb on - strand, within B158DRAFT_0505at 508.933 kb on - strand, within B158DRAFT_0505at 508.989 kb on + strand, within B158DRAFT_0505at 508.989 kb on + strand, within B158DRAFT_0505at 508.989 kb on + strand, within B158DRAFT_0505at 509.059 kb on + strandat 509.059 kb on + strandat 509.067 kb on - strandat 509.067 kb on - strandat 509.067 kb on - strandat 509.091 kb on - strandat 509.113 kb on - strandat 509.147 kb on + strandat 509.149 kb on - strandat 509.157 kb on + strandat 509.172 kb on + strandat 509.180 kb on - strandat 509.180 kb on - strandat 509.185 kb on + strandat 509.185 kb on + strandat 509.191 kb on + strandat 509.193 kb on - strandat 509.222 kb on + strand, within B158DRAFT_0506at 509.306 kb on - strand, within B158DRAFT_0506at 509.311 kb on + strand, within B158DRAFT_0506at 509.319 kb on - strand, within B158DRAFT_0506at 509.409 kb on + strand, within B158DRAFT_0506at 509.417 kb on - strand, within B158DRAFT_0506at 509.417 kb on - strand, within B158DRAFT_0506at 509.530 kb on + strand, within B158DRAFT_0506at 509.530 kb on + strand, within B158DRAFT_0506at 509.530 kb on + strand, within B158DRAFT_0506at 509.535 kb on + strand, within B158DRAFT_0506at 509.543 kb on - strand, within B158DRAFT_0506at 509.572 kb on + strand, within B158DRAFT_0506at 509.572 kb on + strand, within B158DRAFT_0506at 509.579 kb on + strand, within B158DRAFT_0506at 509.587 kb on - strand, within B158DRAFT_0506at 509.632 kb on + strand, within B158DRAFT_0506at 509.637 kb on + strand, within B158DRAFT_0506at 509.713 kb on + strand, within B158DRAFT_0506at 509.738 kb on + strand, within B158DRAFT_0506at 509.750 kb on - strand, within B158DRAFT_0506at 509.761 kb on + strand, within B158DRAFT_0506at 509.813 kb on - strandat 509.815 kb on + strandat 509.815 kb on + strandat 509.815 kb on + strandat 509.815 kb on + strandat 509.818 kb on - strandat 509.823 kb on - strandat 509.823 kb on - strandat 509.863 kb on + strandat 509.882 kb on - strandat 509.912 kb on + strandat 509.920 kb on - strandat 510.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0019531 mg/ml
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507,700 - -0.9
507,779 + B158DRAFT_0504 0.11 -1.0
507,787 + B158DRAFT_0504 0.12 -0.7
507,795 - B158DRAFT_0504 0.14 -0.9
507,836 - B158DRAFT_0504 0.20 -3.0
508,087 + B158DRAFT_0504 0.61 -1.2
508,110 - B158DRAFT_0504 0.65 -0.6
508,185 + B158DRAFT_0504 0.77 -0.2
508,212 + B158DRAFT_0504 0.81 -0.4
508,254 - B158DRAFT_0504 0.88 -1.1
508,279 - -0.8
508,279 - -0.6
508,311 + +0.2
508,328 + -0.3
508,352 - -0.1
508,411 + -0.7
508,421 - -1.0
508,510 + -1.1
508,522 + -0.7
508,530 - -0.8
508,549 - B158DRAFT_0505 0.13 -1.2
508,554 - B158DRAFT_0505 0.14 -0.6
508,605 + B158DRAFT_0505 0.22 -1.8
508,613 - B158DRAFT_0505 0.24 -1.7
508,639 - B158DRAFT_0505 0.28 -1.6
508,689 - B158DRAFT_0505 0.36 -1.0
508,722 - B158DRAFT_0505 0.42 -1.3
508,737 + B158DRAFT_0505 0.45 -1.7
508,745 - B158DRAFT_0505 0.46 -2.7
508,745 - B158DRAFT_0505 0.46 -1.6
508,745 - B158DRAFT_0505 0.46 -1.3
508,827 + B158DRAFT_0505 0.60 -1.5
508,827 + B158DRAFT_0505 0.60 -1.1
508,835 - B158DRAFT_0505 0.61 -0.1
508,835 - B158DRAFT_0505 0.61 -1.4
508,835 - B158DRAFT_0505 0.61 -1.2
508,835 - B158DRAFT_0505 0.61 -1.8
508,835 - B158DRAFT_0505 0.61 -2.3
508,925 + B158DRAFT_0505 0.76 -1.3
508,933 - B158DRAFT_0505 0.78 -0.9
508,933 - B158DRAFT_0505 0.78 -0.9
508,933 - B158DRAFT_0505 0.78 -1.7
508,989 + B158DRAFT_0505 0.87 -1.2
508,989 + B158DRAFT_0505 0.87 -1.2
508,989 + B158DRAFT_0505 0.87 -1.5
509,059 + +0.2
509,059 + -0.9
509,067 - -0.3
509,067 - -0.6
509,067 - -0.2
509,091 - +0.3
509,113 - -2.5
509,147 + -0.2
509,149 - -0.5
509,157 + -0.7
509,172 + -0.3
509,180 - -0.4
509,180 - +0.2
509,185 + -0.1
509,185 + +0.1
509,191 + -0.2
509,193 - +0.1
509,222 + B158DRAFT_0506 0.13 +0.1
509,306 - B158DRAFT_0506 0.25 +0.5
509,311 + B158DRAFT_0506 0.25 +1.7
509,319 - B158DRAFT_0506 0.26 +0.4
509,409 + B158DRAFT_0506 0.39 +0.6
509,417 - B158DRAFT_0506 0.40 -0.1
509,417 - B158DRAFT_0506 0.40 +0.2
509,530 + B158DRAFT_0506 0.55 -0.8
509,530 + B158DRAFT_0506 0.55 +0.2
509,530 + B158DRAFT_0506 0.55 +0.3
509,535 + B158DRAFT_0506 0.56 +0.0
509,543 - B158DRAFT_0506 0.57 -0.3
509,572 + B158DRAFT_0506 0.61 +0.3
509,572 + B158DRAFT_0506 0.61 -0.1
509,579 + B158DRAFT_0506 0.62 +0.2
509,587 - B158DRAFT_0506 0.63 +1.4
509,632 + B158DRAFT_0506 0.69 +1.2
509,637 + B158DRAFT_0506 0.70 +0.1
509,713 + B158DRAFT_0506 0.81 +0.2
509,738 + B158DRAFT_0506 0.84 +0.0
509,750 - B158DRAFT_0506 0.86 -0.2
509,761 + B158DRAFT_0506 0.87 +0.2
509,813 - -1.2
509,815 + -0.3
509,815 + -0.6
509,815 + -0.1
509,815 + -0.1
509,818 - -0.1
509,823 - -0.8
509,823 - -0.2
509,863 + +0.2
509,882 - +0.2
509,912 + -0.0
509,920 - +0.0
510,006 - +0.4

Or see this region's nucleotide sequence