Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0229

Experiment: m.b. Polymyxin B sulfate 0.0019531 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0227 and B158DRAFT_0228 are separated by 15 nucleotidesB158DRAFT_0228 and B158DRAFT_0229 are separated by 28 nucleotidesB158DRAFT_0229 and B158DRAFT_0230 are separated by 131 nucleotidesB158DRAFT_0230 and B158DRAFT_0231 are separated by 56 nucleotides B158DRAFT_0227: B158DRAFT_0227 - TRAP transporter, DctM subunit, at 231,177 to 232,565 _0227 B158DRAFT_0228: B158DRAFT_0228 - glutamate racemase (EC 5.1.1.3), at 232,581 to 233,399 _0228 B158DRAFT_0229: B158DRAFT_0229 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 233,428 to 234,531 _0229 B158DRAFT_0230: B158DRAFT_0230 - hypothetical protein, at 234,663 to 235,394 _0230 B158DRAFT_0231: B158DRAFT_0231 - hypothetical protein, at 235,451 to 236,239 _0231 Position (kb) 233 234 235Strain fitness (log2 ratio) -2 -1 0 1at 232.452 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.511 kb on - strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.536 kb on + strandat 233.536 kb on + strandat 233.539 kb on - strand, within B158DRAFT_0229at 233.539 kb on - strand, within B158DRAFT_0229at 233.539 kb on - strand, within B158DRAFT_0229at 233.645 kb on + strand, within B158DRAFT_0229at 233.672 kb on + strand, within B158DRAFT_0229at 233.707 kb on - strand, within B158DRAFT_0229at 233.778 kb on - strand, within B158DRAFT_0229at 233.816 kb on + strand, within B158DRAFT_0229at 233.816 kb on + strand, within B158DRAFT_0229at 233.816 kb on + strand, within B158DRAFT_0229at 233.849 kb on + strand, within B158DRAFT_0229at 233.877 kb on - strand, within B158DRAFT_0229at 233.893 kb on + strand, within B158DRAFT_0229at 233.941 kb on + strand, within B158DRAFT_0229at 233.941 kb on + strand, within B158DRAFT_0229at 233.949 kb on - strand, within B158DRAFT_0229at 233.961 kb on + strand, within B158DRAFT_0229at 233.969 kb on - strand, within B158DRAFT_0229at 234.070 kb on + strand, within B158DRAFT_0229at 234.078 kb on - strand, within B158DRAFT_0229at 234.125 kb on - strand, within B158DRAFT_0229at 234.160 kb on - strand, within B158DRAFT_0229at 234.231 kb on - strand, within B158DRAFT_0229at 234.231 kb on - strand, within B158DRAFT_0229at 234.231 kb on - strand, within B158DRAFT_0229at 234.236 kb on - strand, within B158DRAFT_0229at 234.241 kb on - strand, within B158DRAFT_0229at 234.264 kb on - strand, within B158DRAFT_0229at 234.314 kb on + strand, within B158DRAFT_0229at 234.314 kb on + strand, within B158DRAFT_0229at 234.314 kb on + strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.327 kb on - strand, within B158DRAFT_0229at 234.345 kb on + strand, within B158DRAFT_0229at 234.345 kb on + strand, within B158DRAFT_0229at 234.357 kb on + strand, within B158DRAFT_0229at 234.357 kb on + strand, within B158DRAFT_0229at 234.357 kb on + strand, within B158DRAFT_0229at 234.586 kb on + strandat 234.604 kb on - strandat 234.604 kb on - strandat 234.604 kb on - strandat 234.754 kb on + strand, within B158DRAFT_0230at 234.764 kb on + strand, within B158DRAFT_0230at 234.804 kb on + strand, within B158DRAFT_0230at 234.812 kb on - strand, within B158DRAFT_0230at 234.812 kb on - strand, within B158DRAFT_0230at 234.862 kb on + strand, within B158DRAFT_0230at 234.877 kb on + strand, within B158DRAFT_0230at 234.885 kb on - strand, within B158DRAFT_0230at 234.885 kb on - strand, within B158DRAFT_0230at 234.973 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.114 kb on + strand, within B158DRAFT_0230at 235.125 kb on + strand, within B158DRAFT_0230at 235.125 kb on + strand, within B158DRAFT_0230at 235.125 kb on + strand, within B158DRAFT_0230at 235.133 kb on - strand, within B158DRAFT_0230at 235.133 kb on - strand, within B158DRAFT_0230at 235.133 kb on - strand, within B158DRAFT_0230at 235.142 kb on + strand, within B158DRAFT_0230at 235.233 kb on - strand, within B158DRAFT_0230at 235.238 kb on - strand, within B158DRAFT_0230at 235.321 kb on + strandat 235.339 kb on - strandat 235.352 kb on + strandat 235.358 kb on - strandat 235.511 kb on + strandat 235.516 kb on + strandat 235.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0019531 mg/ml
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232,452 + -1.0
233,474 + +0.2
233,474 + -0.4
233,474 + -0.6
233,474 + -0.2
233,474 + +0.5
233,474 + -0.9
233,474 + -2.5
233,474 + +0.2
233,482 - -0.3
233,482 - -1.0
233,482 - -1.5
233,482 - -0.3
233,482 - +0.6
233,482 - -0.2
233,511 - +0.4
233,531 + +0.5
233,531 + -0.3
233,531 + -0.2
233,531 + +1.1
233,531 + -0.1
233,531 + -0.4
233,531 + +0.3
233,531 + -0.2
233,531 + -0.1
233,531 + -0.1
233,536 + -0.5
233,536 + +0.0
233,539 - B158DRAFT_0229 0.10 -0.2
233,539 - B158DRAFT_0229 0.10 -0.7
233,539 - B158DRAFT_0229 0.10 +0.2
233,645 + B158DRAFT_0229 0.20 -0.3
233,672 + B158DRAFT_0229 0.22 -0.7
233,707 - B158DRAFT_0229 0.25 +0.5
233,778 - B158DRAFT_0229 0.32 -0.7
233,816 + B158DRAFT_0229 0.35 +0.1
233,816 + B158DRAFT_0229 0.35 -0.3
233,816 + B158DRAFT_0229 0.35 -0.4
233,849 + B158DRAFT_0229 0.38 -0.3
233,877 - B158DRAFT_0229 0.41 -0.6
233,893 + B158DRAFT_0229 0.42 +0.4
233,941 + B158DRAFT_0229 0.46 +0.1
233,941 + B158DRAFT_0229 0.46 -0.8
233,949 - B158DRAFT_0229 0.47 -0.2
233,961 + B158DRAFT_0229 0.48 -0.2
233,969 - B158DRAFT_0229 0.49 -0.2
234,070 + B158DRAFT_0229 0.58 +0.6
234,078 - B158DRAFT_0229 0.59 -0.5
234,125 - B158DRAFT_0229 0.63 -0.2
234,160 - B158DRAFT_0229 0.66 -0.2
234,231 - B158DRAFT_0229 0.73 +0.1
234,231 - B158DRAFT_0229 0.73 -0.6
234,231 - B158DRAFT_0229 0.73 +0.3
234,236 - B158DRAFT_0229 0.73 +0.0
234,241 - B158DRAFT_0229 0.74 -0.3
234,264 - B158DRAFT_0229 0.76 -1.3
234,314 + B158DRAFT_0229 0.80 -0.1
234,314 + B158DRAFT_0229 0.80 -0.5
234,314 + B158DRAFT_0229 0.80 +0.3
234,322 - B158DRAFT_0229 0.81 -0.3
234,322 - B158DRAFT_0229 0.81 -1.1
234,322 - B158DRAFT_0229 0.81 -0.6
234,322 - B158DRAFT_0229 0.81 -0.1
234,322 - B158DRAFT_0229 0.81 +0.1
234,322 - B158DRAFT_0229 0.81 -0.6
234,327 - B158DRAFT_0229 0.81 +0.1
234,345 + B158DRAFT_0229 0.83 -1.1
234,345 + B158DRAFT_0229 0.83 +0.4
234,357 + B158DRAFT_0229 0.84 -1.2
234,357 + B158DRAFT_0229 0.84 +0.1
234,357 + B158DRAFT_0229 0.84 +0.1
234,586 + -1.6
234,604 - +0.2
234,604 - +0.4
234,604 - +0.2
234,754 + B158DRAFT_0230 0.12 -0.5
234,764 + B158DRAFT_0230 0.14 -0.4
234,804 + B158DRAFT_0230 0.19 +1.2
234,812 - B158DRAFT_0230 0.20 -0.7
234,812 - B158DRAFT_0230 0.20 +0.3
234,862 + B158DRAFT_0230 0.27 +0.2
234,877 + B158DRAFT_0230 0.29 +0.5
234,885 - B158DRAFT_0230 0.30 -0.5
234,885 - B158DRAFT_0230 0.30 +0.4
234,973 + B158DRAFT_0230 0.42 -0.4
235,068 + B158DRAFT_0230 0.55 +0.2
235,068 + B158DRAFT_0230 0.55 -0.6
235,068 + B158DRAFT_0230 0.55 -0.9
235,068 + B158DRAFT_0230 0.55 +0.4
235,068 + B158DRAFT_0230 0.55 +0.0
235,068 + B158DRAFT_0230 0.55 +0.0
235,076 - B158DRAFT_0230 0.56 -0.5
235,076 - B158DRAFT_0230 0.56 +0.2
235,076 - B158DRAFT_0230 0.56 -0.0
235,076 - B158DRAFT_0230 0.56 +0.4
235,076 - B158DRAFT_0230 0.56 -0.5
235,076 - B158DRAFT_0230 0.56 -0.1
235,076 - B158DRAFT_0230 0.56 +0.1
235,114 + B158DRAFT_0230 0.62 -0.3
235,125 + B158DRAFT_0230 0.63 -1.3
235,125 + B158DRAFT_0230 0.63 -0.1
235,125 + B158DRAFT_0230 0.63 -0.1
235,133 - B158DRAFT_0230 0.64 +0.4
235,133 - B158DRAFT_0230 0.64 -1.0
235,133 - B158DRAFT_0230 0.64 -0.2
235,142 + B158DRAFT_0230 0.65 -0.2
235,233 - B158DRAFT_0230 0.78 -0.8
235,238 - B158DRAFT_0230 0.79 -0.0
235,321 + +0.1
235,339 - -0.8
235,352 + -1.2
235,358 - -0.8
235,511 + -0.1
235,516 + -0.1
235,519 - -0.2

Or see this region's nucleotide sequence