Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1546

Experiment: m.b. perchlorate 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1543 and B158DRAFT_1544 are separated by 162 nucleotidesB158DRAFT_1544 and B158DRAFT_1546 are separated by 308 nucleotidesB158DRAFT_1546 and B158DRAFT_1547 are separated by 301 nucleotidesB158DRAFT_1547 and B158DRAFT_1548 are separated by 71 nucleotides B158DRAFT_1543: B158DRAFT_1543 - Multidrug resistance efflux pump, at 1,599,341 to 1,600,543 _1543 B158DRAFT_1544: B158DRAFT_1544 - tRNA_Arg_ACG, at 1,600,706 to 1,600,782 _1544 B158DRAFT_1546: B158DRAFT_1546 - hypothetical protein, at 1,601,091 to 1,601,315 _1546 B158DRAFT_1547: B158DRAFT_1547 - hypothetical protein, at 1,601,617 to 1,602,090 _1547 B158DRAFT_1548: B158DRAFT_1548 - Uncharacterized protein related to deoxyribodipyrimidine photolyase, at 1,602,162 to 1,603,709 _1548 Position (kb) 1601 1602Strain fitness (log2 ratio) -2 -1 0 1 2at 1600.127 kb on + strand, within B158DRAFT_1543at 1600.145 kb on + strand, within B158DRAFT_1543at 1600.172 kb on - strand, within B158DRAFT_1543at 1600.199 kb on + strand, within B158DRAFT_1543at 1600.229 kb on - strand, within B158DRAFT_1543at 1600.229 kb on - strand, within B158DRAFT_1543at 1600.238 kb on + strand, within B158DRAFT_1543at 1600.248 kb on + strand, within B158DRAFT_1543at 1600.248 kb on + strand, within B158DRAFT_1543at 1600.250 kb on + strand, within B158DRAFT_1543at 1600.256 kb on - strand, within B158DRAFT_1543at 1600.256 kb on - strand, within B158DRAFT_1543at 1600.321 kb on - strand, within B158DRAFT_1543at 1600.334 kb on - strand, within B158DRAFT_1543at 1600.385 kb on + strand, within B158DRAFT_1543at 1600.391 kb on - strand, within B158DRAFT_1543at 1600.391 kb on - strand, within B158DRAFT_1543at 1600.391 kb on - strand, within B158DRAFT_1543at 1600.393 kb on - strand, within B158DRAFT_1543at 1600.411 kb on - strand, within B158DRAFT_1543at 1600.413 kb on + strand, within B158DRAFT_1543at 1600.420 kb on + strand, within B158DRAFT_1543at 1600.421 kb on - strand, within B158DRAFT_1543at 1600.421 kb on - strand, within B158DRAFT_1543at 1600.461 kb on + strandat 1600.461 kb on + strandat 1600.469 kb on - strandat 1600.833 kb on + strandat 1600.840 kb on - strandat 1601.009 kb on - strandat 1601.009 kb on - strandat 1601.057 kb on - strandat 1601.067 kb on - strandat 1601.087 kb on - strandat 1601.283 kb on - strand, within B158DRAFT_1546at 1601.338 kb on + strandat 1601.340 kb on - strandat 1601.415 kb on - strandat 1601.419 kb on + strandat 1601.419 kb on + strandat 1601.419 kb on + strandat 1601.419 kb on + strandat 1601.427 kb on - strandat 1601.454 kb on + strandat 1601.462 kb on - strandat 1601.564 kb on + strandat 1601.564 kb on + strandat 1601.564 kb on + strandat 1601.571 kb on + strandat 1601.572 kb on - strandat 1601.572 kb on - strandat 1601.589 kb on - strandat 1601.658 kb on + strandat 1601.666 kb on - strand, within B158DRAFT_1547at 1601.677 kb on + strand, within B158DRAFT_1547at 1601.677 kb on + strand, within B158DRAFT_1547at 1601.677 kb on + strand, within B158DRAFT_1547at 1601.685 kb on - strand, within B158DRAFT_1547at 1601.685 kb on - strand, within B158DRAFT_1547at 1601.856 kb on + strand, within B158DRAFT_1547at 1601.906 kb on + strand, within B158DRAFT_1547at 1601.916 kb on + strand, within B158DRAFT_1547at 1601.924 kb on - strand, within B158DRAFT_1547at 1601.924 kb on - strand, within B158DRAFT_1547at 1601.924 kb on - strand, within B158DRAFT_1547at 1601.924 kb on - strand, within B158DRAFT_1547at 1601.924 kb on - strand, within B158DRAFT_1547at 1601.954 kb on - strand, within B158DRAFT_1547at 1601.973 kb on - strand, within B158DRAFT_1547at 1601.985 kb on + strand, within B158DRAFT_1547at 1601.993 kb on - strand, within B158DRAFT_1547at 1602.017 kb on + strand, within B158DRAFT_1547at 1602.017 kb on + strand, within B158DRAFT_1547at 1602.017 kb on - strand, within B158DRAFT_1547at 1602.035 kb on - strand, within B158DRAFT_1547at 1602.048 kb on + strandat 1602.048 kb on + strandat 1602.048 kb on + strandat 1602.048 kb on + strandat 1602.056 kb on - strandat 1602.056 kb on - strandat 1602.095 kb on + strandat 1602.125 kb on - strandat 1602.147 kb on - strandat 1602.147 kb on - strandat 1602.154 kb on + strandat 1602.154 kb on + strandat 1602.154 kb on + strandat 1602.154 kb on + strandat 1602.162 kb on - strandat 1602.162 kb on - strandat 1602.187 kb on + strandat 1602.187 kb on + strandat 1602.187 kb on + strandat 1602.187 kb on + strandat 1602.187 kb on + strandat 1602.187 kb on + strandat 1602.187 kb on + strandat 1602.195 kb on - strandat 1602.195 kb on - strandat 1602.195 kb on - strandat 1602.205 kb on + strandat 1602.206 kb on + strandat 1602.206 kb on + strandat 1602.206 kb on + strandat 1602.206 kb on + strandat 1602.206 kb on + strandat 1602.206 kb on + strandat 1602.206 kb on + strandat 1602.214 kb on - strandat 1602.214 kb on - strandat 1602.214 kb on - strandat 1602.214 kb on - strandat 1602.214 kb on - strandat 1602.214 kb on - strandat 1602.219 kb on - strandat 1602.224 kb on - strandat 1602.224 kb on - strandat 1602.311 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
remove
1,600,127 + B158DRAFT_1543 0.65 -0.9
1,600,145 + B158DRAFT_1543 0.67 +0.3
1,600,172 - B158DRAFT_1543 0.69 -2.0
1,600,199 + B158DRAFT_1543 0.71 -0.2
1,600,229 - B158DRAFT_1543 0.74 -0.6
1,600,229 - B158DRAFT_1543 0.74 -0.7
1,600,238 + B158DRAFT_1543 0.75 -0.3
1,600,248 + B158DRAFT_1543 0.75 +0.1
1,600,248 + B158DRAFT_1543 0.75 +1.1
1,600,250 + B158DRAFT_1543 0.76 -1.7
1,600,256 - B158DRAFT_1543 0.76 -0.5
1,600,256 - B158DRAFT_1543 0.76 +1.3
1,600,321 - B158DRAFT_1543 0.81 -0.2
1,600,334 - B158DRAFT_1543 0.83 +0.2
1,600,385 + B158DRAFT_1543 0.87 -0.1
1,600,391 - B158DRAFT_1543 0.87 +0.6
1,600,391 - B158DRAFT_1543 0.87 -0.2
1,600,391 - B158DRAFT_1543 0.87 -0.2
1,600,393 - B158DRAFT_1543 0.87 -0.2
1,600,411 - B158DRAFT_1543 0.89 -0.5
1,600,413 + B158DRAFT_1543 0.89 -0.3
1,600,420 + B158DRAFT_1543 0.90 -0.4
1,600,421 - B158DRAFT_1543 0.90 -0.1
1,600,421 - B158DRAFT_1543 0.90 +0.1
1,600,461 + -0.6
1,600,461 + -0.3
1,600,469 - +0.2
1,600,833 + -0.5
1,600,840 - -0.1
1,601,009 - -0.4
1,601,009 - -0.2
1,601,057 - +0.1
1,601,067 - +0.2
1,601,087 - +0.1
1,601,283 - B158DRAFT_1546 0.85 +0.8
1,601,338 + +0.2
1,601,340 - -0.0
1,601,415 - +1.0
1,601,419 + +0.1
1,601,419 + +0.0
1,601,419 + -0.4
1,601,419 + -0.4
1,601,427 - -0.0
1,601,454 + +0.6
1,601,462 - +1.0
1,601,564 + +0.6
1,601,564 + -0.4
1,601,564 + -1.9
1,601,571 + +0.5
1,601,572 - +0.1
1,601,572 - +0.1
1,601,589 - -0.0
1,601,658 + +0.1
1,601,666 - B158DRAFT_1547 0.10 +0.3
1,601,677 + B158DRAFT_1547 0.13 +0.2
1,601,677 + B158DRAFT_1547 0.13 +0.2
1,601,677 + B158DRAFT_1547 0.13 -0.4
1,601,685 - B158DRAFT_1547 0.14 -0.5
1,601,685 - B158DRAFT_1547 0.14 -0.7
1,601,856 + B158DRAFT_1547 0.50 -0.7
1,601,906 + B158DRAFT_1547 0.61 +0.2
1,601,916 + B158DRAFT_1547 0.63 +0.3
1,601,924 - B158DRAFT_1547 0.65 +1.0
1,601,924 - B158DRAFT_1547 0.65 +0.6
1,601,924 - B158DRAFT_1547 0.65 -0.4
1,601,924 - B158DRAFT_1547 0.65 -0.2
1,601,924 - B158DRAFT_1547 0.65 +0.6
1,601,954 - B158DRAFT_1547 0.71 -0.0
1,601,973 - B158DRAFT_1547 0.75 -0.5
1,601,985 + B158DRAFT_1547 0.78 -0.0
1,601,993 - B158DRAFT_1547 0.79 -0.6
1,602,017 + B158DRAFT_1547 0.84 +1.2
1,602,017 + B158DRAFT_1547 0.84 -1.1
1,602,017 - B158DRAFT_1547 0.84 -0.7
1,602,035 - B158DRAFT_1547 0.88 -0.2
1,602,048 + +0.0
1,602,048 + +0.3
1,602,048 + +0.1
1,602,048 + -0.2
1,602,056 - +0.6
1,602,056 - -0.4
1,602,095 + -0.2
1,602,125 - +0.5
1,602,147 - -0.8
1,602,147 - +0.4
1,602,154 + +0.4
1,602,154 + +0.1
1,602,154 + -0.7
1,602,154 + -1.0
1,602,162 - +0.3
1,602,162 - +0.7
1,602,187 + +0.4
1,602,187 + -0.1
1,602,187 + +0.2
1,602,187 + +0.3
1,602,187 + -0.9
1,602,187 + -0.3
1,602,187 + -0.1
1,602,195 - +0.6
1,602,195 - +0.2
1,602,195 - -0.1
1,602,205 + +2.1
1,602,206 + -0.3
1,602,206 + +0.3
1,602,206 + -0.3
1,602,206 + -0.9
1,602,206 + +0.0
1,602,206 + +0.0
1,602,206 + -0.7
1,602,214 - -1.8
1,602,214 - -0.5
1,602,214 - -0.4
1,602,214 - +0.1
1,602,214 - +0.0
1,602,214 - -0.5
1,602,219 - +0.2
1,602,224 - -0.4
1,602,224 - -0.1
1,602,311 + +0.2

Or see this region's nucleotide sequence