Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1199

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1198 and B158DRAFT_1199 are separated by 56 nucleotidesB158DRAFT_1199 and B158DRAFT_1200 are separated by 99 nucleotides B158DRAFT_1198: B158DRAFT_1198 - ABC-type multidrug transport system, permease component, at 1,236,865 to 1,238,166 _1198 B158DRAFT_1199: B158DRAFT_1199 - Uncharacterized protein conserved in bacteria, at 1,238,223 to 1,238,450 _1199 B158DRAFT_1200: B158DRAFT_1200 - fumarase, class II (EC 4.2.1.2), at 1,238,550 to 1,239,911 _1200 Position (kb) 1238 1239Strain fitness (log2 ratio) -1 0 1at 1237.240 kb on - strand, within B158DRAFT_1198at 1237.384 kb on - strand, within B158DRAFT_1198at 1237.395 kb on + strand, within B158DRAFT_1198at 1237.489 kb on - strand, within B158DRAFT_1198at 1237.489 kb on - strand, within B158DRAFT_1198at 1237.572 kb on + strand, within B158DRAFT_1198at 1237.638 kb on - strand, within B158DRAFT_1198at 1237.711 kb on + strand, within B158DRAFT_1198at 1237.732 kb on + strand, within B158DRAFT_1198at 1237.732 kb on + strand, within B158DRAFT_1198at 1237.740 kb on - strand, within B158DRAFT_1198at 1237.757 kb on + strand, within B158DRAFT_1198at 1237.776 kb on - strand, within B158DRAFT_1198at 1237.878 kb on - strand, within B158DRAFT_1198at 1238.017 kb on + strand, within B158DRAFT_1198at 1238.070 kb on - strandat 1238.262 kb on + strand, within B158DRAFT_1199at 1238.591 kb on + strandat 1238.791 kb on - strand, within B158DRAFT_1200at 1238.860 kb on + strand, within B158DRAFT_1200at 1238.940 kb on + strand, within B158DRAFT_1200at 1239.015 kb on - strand, within B158DRAFT_1200at 1239.082 kb on - strand, within B158DRAFT_1200at 1239.142 kb on + strand, within B158DRAFT_1200at 1239.212 kb on + strand, within B158DRAFT_1200at 1239.302 kb on - strand, within B158DRAFT_1200at 1239.334 kb on + strand, within B158DRAFT_1200at 1239.352 kb on + strand, within B158DRAFT_1200at 1239.369 kb on + strand, within B158DRAFT_1200at 1239.371 kb on + strand, within B158DRAFT_1200at 1239.432 kb on + strand, within B158DRAFT_1200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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1,237,240 - B158DRAFT_1198 0.29 +0.4
1,237,384 - B158DRAFT_1198 0.40 +0.1
1,237,395 + B158DRAFT_1198 0.41 -0.1
1,237,489 - B158DRAFT_1198 0.48 -0.4
1,237,489 - B158DRAFT_1198 0.48 -0.2
1,237,572 + B158DRAFT_1198 0.54 +0.1
1,237,638 - B158DRAFT_1198 0.59 -0.0
1,237,711 + B158DRAFT_1198 0.65 +0.8
1,237,732 + B158DRAFT_1198 0.67 +0.1
1,237,732 + B158DRAFT_1198 0.67 -0.3
1,237,740 - B158DRAFT_1198 0.67 +0.1
1,237,757 + B158DRAFT_1198 0.69 -0.5
1,237,776 - B158DRAFT_1198 0.70 -0.1
1,237,878 - B158DRAFT_1198 0.78 +0.7
1,238,017 + B158DRAFT_1198 0.88 +0.6
1,238,070 - +0.1
1,238,262 + B158DRAFT_1199 0.17 -1.6
1,238,591 + +0.2
1,238,791 - B158DRAFT_1200 0.18 +0.2
1,238,860 + B158DRAFT_1200 0.23 -0.0
1,238,940 + B158DRAFT_1200 0.29 -0.2
1,239,015 - B158DRAFT_1200 0.34 +0.3
1,239,082 - B158DRAFT_1200 0.39 -1.4
1,239,142 + B158DRAFT_1200 0.43 +0.1
1,239,212 + B158DRAFT_1200 0.49 +0.6
1,239,302 - B158DRAFT_1200 0.55 -0.0
1,239,334 + B158DRAFT_1200 0.58 -0.1
1,239,352 + B158DRAFT_1200 0.59 -0.8
1,239,369 + B158DRAFT_1200 0.60 -0.4
1,239,371 + B158DRAFT_1200 0.60 +0.3
1,239,432 + B158DRAFT_1200 0.65 -0.7

Or see this region's nucleotide sequence