Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0689

Experiment: m.b. Chlorate 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0688 and B158DRAFT_0689 overlap by 4 nucleotidesB158DRAFT_0689 and B158DRAFT_0690 overlap by 1 nucleotides B158DRAFT_0688: B158DRAFT_0688 - type II secretion system protein C (GspC), at 689,289 to 690,242 _0688 B158DRAFT_0689: B158DRAFT_0689 - general secretion pathway protein D, at 690,239 to 692,371 _0689 B158DRAFT_0690: B158DRAFT_0690 - general secretory pathway protein E, at 692,371 to 693,900 _0690 Position (kb) 690 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1at 689.259 kb on + strandat 689.441 kb on - strand, within B158DRAFT_0688at 689.501 kb on - strand, within B158DRAFT_0688at 689.619 kb on + strand, within B158DRAFT_0688at 689.725 kb on + strand, within B158DRAFT_0688at 689.725 kb on + strand, within B158DRAFT_0688at 689.725 kb on - strand, within B158DRAFT_0688at 689.834 kb on + strand, within B158DRAFT_0688at 689.834 kb on + strand, within B158DRAFT_0688at 689.842 kb on - strand, within B158DRAFT_0688at 689.842 kb on - strand, within B158DRAFT_0688at 689.842 kb on - strand, within B158DRAFT_0688at 689.866 kb on + strand, within B158DRAFT_0688at 689.877 kb on + strand, within B158DRAFT_0688at 689.877 kb on + strand, within B158DRAFT_0688at 690.052 kb on - strand, within B158DRAFT_0688at 690.094 kb on + strand, within B158DRAFT_0688at 690.114 kb on + strand, within B158DRAFT_0688at 690.119 kb on + strand, within B158DRAFT_0688at 690.124 kb on + strand, within B158DRAFT_0688at 690.124 kb on + strand, within B158DRAFT_0688at 690.154 kb on + strandat 690.166 kb on + strandat 690.319 kb on - strandat 690.348 kb on + strandat 690.348 kb on + strandat 690.348 kb on + strandat 690.428 kb on - strandat 690.441 kb on + strandat 690.441 kb on + strandat 690.441 kb on + strandat 690.524 kb on + strand, within B158DRAFT_0689at 690.526 kb on - strand, within B158DRAFT_0689at 690.650 kb on + strand, within B158DRAFT_0689at 690.728 kb on - strand, within B158DRAFT_0689at 690.756 kb on + strand, within B158DRAFT_0689at 690.777 kb on + strand, within B158DRAFT_0689at 690.873 kb on + strand, within B158DRAFT_0689at 690.987 kb on + strand, within B158DRAFT_0689at 690.987 kb on + strand, within B158DRAFT_0689at 690.987 kb on + strand, within B158DRAFT_0689at 690.987 kb on + strand, within B158DRAFT_0689at 690.995 kb on - strand, within B158DRAFT_0689at 691.024 kb on + strand, within B158DRAFT_0689at 691.024 kb on + strand, within B158DRAFT_0689at 691.032 kb on + strand, within B158DRAFT_0689at 691.032 kb on - strand, within B158DRAFT_0689at 691.032 kb on - strand, within B158DRAFT_0689at 691.110 kb on - strand, within B158DRAFT_0689at 691.407 kb on - strand, within B158DRAFT_0689at 691.407 kb on - strand, within B158DRAFT_0689at 691.419 kb on + strand, within B158DRAFT_0689at 691.427 kb on - strand, within B158DRAFT_0689at 691.472 kb on - strand, within B158DRAFT_0689at 691.587 kb on + strand, within B158DRAFT_0689at 691.604 kb on + strand, within B158DRAFT_0689at 691.612 kb on - strand, within B158DRAFT_0689at 691.621 kb on - strand, within B158DRAFT_0689at 691.623 kb on + strand, within B158DRAFT_0689at 691.628 kb on + strand, within B158DRAFT_0689at 691.652 kb on - strand, within B158DRAFT_0689at 691.659 kb on + strand, within B158DRAFT_0689at 691.659 kb on + strand, within B158DRAFT_0689at 691.659 kb on + strand, within B158DRAFT_0689at 691.659 kb on + strand, within B158DRAFT_0689at 691.667 kb on - strand, within B158DRAFT_0689at 691.667 kb on - strand, within B158DRAFT_0689at 691.667 kb on - strand, within B158DRAFT_0689at 691.727 kb on + strand, within B158DRAFT_0689at 691.794 kb on + strand, within B158DRAFT_0689at 691.802 kb on - strand, within B158DRAFT_0689at 691.802 kb on - strand, within B158DRAFT_0689at 692.154 kb on + strand, within B158DRAFT_0689at 692.285 kb on - strandat 692.303 kb on + strandat 692.311 kb on - strandat 692.332 kb on + strandat 692.356 kb on + strandat 692.634 kb on + strand, within B158DRAFT_0690at 692.634 kb on + strand, within B158DRAFT_0690at 692.642 kb on + strand, within B158DRAFT_0690at 692.642 kb on - strand, within B158DRAFT_0690at 692.686 kb on + strand, within B158DRAFT_0690at 692.771 kb on + strand, within B158DRAFT_0690at 693.161 kb on + strand, within B158DRAFT_0690at 693.298 kb on - strand, within B158DRAFT_0690at 693.308 kb on - strand, within B158DRAFT_0690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 20 mM
remove
689,259 + -0.3
689,441 - B158DRAFT_0688 0.16 -1.8
689,501 - B158DRAFT_0688 0.22 -0.8
689,619 + B158DRAFT_0688 0.35 -1.3
689,725 + B158DRAFT_0688 0.46 -1.1
689,725 + B158DRAFT_0688 0.46 -0.8
689,725 - B158DRAFT_0688 0.46 -1.9
689,834 + B158DRAFT_0688 0.57 -0.1
689,834 + B158DRAFT_0688 0.57 +0.2
689,842 - B158DRAFT_0688 0.58 -2.6
689,842 - B158DRAFT_0688 0.58 -1.0
689,842 - B158DRAFT_0688 0.58 -1.3
689,866 + B158DRAFT_0688 0.60 -0.9
689,877 + B158DRAFT_0688 0.62 -1.8
689,877 + B158DRAFT_0688 0.62 -1.8
690,052 - B158DRAFT_0688 0.80 -1.7
690,094 + B158DRAFT_0688 0.84 -1.1
690,114 + B158DRAFT_0688 0.86 -0.6
690,119 + B158DRAFT_0688 0.87 -2.1
690,124 + B158DRAFT_0688 0.88 -2.3
690,124 + B158DRAFT_0688 0.88 -1.6
690,154 + -2.1
690,166 + -1.3
690,319 - +0.5
690,348 + -2.1
690,348 + -1.2
690,348 + -0.8
690,428 - -1.3
690,441 + -3.0
690,441 + -2.1
690,441 + -1.1
690,524 + B158DRAFT_0689 0.13 -0.8
690,526 - B158DRAFT_0689 0.13 -1.9
690,650 + B158DRAFT_0689 0.19 -1.3
690,728 - B158DRAFT_0689 0.23 -1.1
690,756 + B158DRAFT_0689 0.24 -2.2
690,777 + B158DRAFT_0689 0.25 -1.1
690,873 + B158DRAFT_0689 0.30 -2.7
690,987 + B158DRAFT_0689 0.35 -1.3
690,987 + B158DRAFT_0689 0.35 -2.3
690,987 + B158DRAFT_0689 0.35 -1.3
690,987 + B158DRAFT_0689 0.35 -1.3
690,995 - B158DRAFT_0689 0.35 -2.1
691,024 + B158DRAFT_0689 0.37 -1.8
691,024 + B158DRAFT_0689 0.37 -0.8
691,032 + B158DRAFT_0689 0.37 -1.6
691,032 - B158DRAFT_0689 0.37 -0.9
691,032 - B158DRAFT_0689 0.37 -1.8
691,110 - B158DRAFT_0689 0.41 -1.3
691,407 - B158DRAFT_0689 0.55 -2.5
691,407 - B158DRAFT_0689 0.55 -1.1
691,419 + B158DRAFT_0689 0.55 -1.6
691,427 - B158DRAFT_0689 0.56 -2.7
691,472 - B158DRAFT_0689 0.58 -3.1
691,587 + B158DRAFT_0689 0.63 -1.8
691,604 + B158DRAFT_0689 0.64 -0.8
691,612 - B158DRAFT_0689 0.64 +0.2
691,621 - B158DRAFT_0689 0.65 -1.9
691,623 + B158DRAFT_0689 0.65 -0.9
691,628 + B158DRAFT_0689 0.65 -1.1
691,652 - B158DRAFT_0689 0.66 -1.3
691,659 + B158DRAFT_0689 0.67 -1.9
691,659 + B158DRAFT_0689 0.67 -2.5
691,659 + B158DRAFT_0689 0.67 -2.1
691,659 + B158DRAFT_0689 0.67 -1.3
691,667 - B158DRAFT_0689 0.67 -3.2
691,667 - B158DRAFT_0689 0.67 -1.1
691,667 - B158DRAFT_0689 0.67 -0.9
691,727 + B158DRAFT_0689 0.70 -1.6
691,794 + B158DRAFT_0689 0.73 -1.3
691,802 - B158DRAFT_0689 0.73 -1.6
691,802 - B158DRAFT_0689 0.73 -1.6
692,154 + B158DRAFT_0689 0.90 -0.3
692,285 - -2.2
692,303 + -1.1
692,311 - -1.6
692,332 + -1.6
692,356 + -1.0
692,634 + B158DRAFT_0690 0.17 -1.9
692,634 + B158DRAFT_0690 0.17 -0.3
692,642 + B158DRAFT_0690 0.18 -1.6
692,642 - B158DRAFT_0690 0.18 -2.2
692,686 + B158DRAFT_0690 0.21 -1.6
692,771 + B158DRAFT_0690 0.26 -1.6
693,161 + B158DRAFT_0690 0.52 -1.3
693,298 - B158DRAFT_0690 0.61 -1.8
693,308 - B158DRAFT_0690 0.61 -0.3

Or see this region's nucleotide sequence