Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0005

Experiment: m.b. Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0004 and B158DRAFT_0005 are separated by 80 nucleotidesB158DRAFT_0005 and B158DRAFT_0006 are separated by 35 nucleotidesB158DRAFT_0006 and B158DRAFT_0007 are separated by 142 nucleotidesB158DRAFT_0007 and B158DRAFT_0008 overlap by 11 nucleotides B158DRAFT_0004: B158DRAFT_0004 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 4,995 to 6,101 _0004 B158DRAFT_0005: B158DRAFT_0005 - diguanylate cyclase (GGDEF) domain, at 6,182 to 7,309 _0005 B158DRAFT_0006: B158DRAFT_0006 - Iron-sulfur cluster assembly accessory protein, at 7,345 to 7,671 _0006 B158DRAFT_0007: B158DRAFT_0007 - Integral membrane protein CcmA involved in cell shape determination, at 7,814 to 8,299 _0007 B158DRAFT_0008: B158DRAFT_0008 - hypothetical protein, at 8,289 to 9,041 _0008 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1at 5.257 kb on + strand, within B158DRAFT_0004at 5.290 kb on + strand, within B158DRAFT_0004at 5.332 kb on - strand, within B158DRAFT_0004at 5.355 kb on + strand, within B158DRAFT_0004at 5.363 kb on - strand, within B158DRAFT_0004at 5.417 kb on + strand, within B158DRAFT_0004at 5.417 kb on + strand, within B158DRAFT_0004at 5.435 kb on - strand, within B158DRAFT_0004at 5.439 kb on + strand, within B158DRAFT_0004at 5.439 kb on + strand, within B158DRAFT_0004at 5.439 kb on + strand, within B158DRAFT_0004at 5.444 kb on + strand, within B158DRAFT_0004at 5.447 kb on - strand, within B158DRAFT_0004at 5.481 kb on + strand, within B158DRAFT_0004at 5.481 kb on + strand, within B158DRAFT_0004at 5.489 kb on - strand, within B158DRAFT_0004at 5.489 kb on - strand, within B158DRAFT_0004at 5.517 kb on + strand, within B158DRAFT_0004at 5.576 kb on - strand, within B158DRAFT_0004at 5.610 kb on - strand, within B158DRAFT_0004at 5.642 kb on - strand, within B158DRAFT_0004at 5.703 kb on + strand, within B158DRAFT_0004at 5.703 kb on + strand, within B158DRAFT_0004at 5.711 kb on - strand, within B158DRAFT_0004at 5.711 kb on - strand, within B158DRAFT_0004at 5.736 kb on - strand, within B158DRAFT_0004at 5.760 kb on - strand, within B158DRAFT_0004at 5.857 kb on - strand, within B158DRAFT_0004at 5.866 kb on + strand, within B158DRAFT_0004at 5.868 kb on + strand, within B158DRAFT_0004at 5.874 kb on - strand, within B158DRAFT_0004at 5.874 kb on - strand, within B158DRAFT_0004at 5.874 kb on - strand, within B158DRAFT_0004at 5.876 kb on - strand, within B158DRAFT_0004at 5.876 kb on - strand, within B158DRAFT_0004at 5.876 kb on - strand, within B158DRAFT_0004at 5.958 kb on - strand, within B158DRAFT_0004at 5.970 kb on + strand, within B158DRAFT_0004at 5.970 kb on + strand, within B158DRAFT_0004at 5.978 kb on - strand, within B158DRAFT_0004at 5.980 kb on + strand, within B158DRAFT_0004at 5.988 kb on - strand, within B158DRAFT_0004at 6.002 kb on - strandat 6.004 kb on + strandat 6.012 kb on - strandat 6.014 kb on + strandat 6.019 kb on + strandat 6.070 kb on + strandat 6.203 kb on - strandat 6.224 kb on + strandat 6.287 kb on + strandat 6.287 kb on + strandat 6.311 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.340 kb on + strand, within B158DRAFT_0005at 6.421 kb on + strand, within B158DRAFT_0005at 6.449 kb on + strand, within B158DRAFT_0005at 6.449 kb on + strand, within B158DRAFT_0005at 6.464 kb on + strand, within B158DRAFT_0005at 6.464 kb on + strand, within B158DRAFT_0005at 6.464 kb on + strand, within B158DRAFT_0005at 6.464 kb on + strand, within B158DRAFT_0005at 6.464 kb on - strand, within B158DRAFT_0005at 6.464 kb on - strand, within B158DRAFT_0005at 6.472 kb on - strand, within B158DRAFT_0005at 6.472 kb on - strand, within B158DRAFT_0005at 6.545 kb on + strand, within B158DRAFT_0005at 6.545 kb on + strand, within B158DRAFT_0005at 6.545 kb on + strand, within B158DRAFT_0005at 6.553 kb on - strand, within B158DRAFT_0005at 6.553 kb on - strand, within B158DRAFT_0005at 6.553 kb on - strand, within B158DRAFT_0005at 6.592 kb on - strand, within B158DRAFT_0005at 6.664 kb on + strand, within B158DRAFT_0005at 6.838 kb on - strand, within B158DRAFT_0005at 6.962 kb on + strand, within B158DRAFT_0005at 6.962 kb on + strand, within B158DRAFT_0005at 6.970 kb on - strand, within B158DRAFT_0005at 6.988 kb on + strand, within B158DRAFT_0005at 7.051 kb on + strand, within B158DRAFT_0005at 7.051 kb on + strand, within B158DRAFT_0005at 7.051 kb on + strand, within B158DRAFT_0005at 7.072 kb on - strand, within B158DRAFT_0005at 7.125 kb on + strand, within B158DRAFT_0005at 7.141 kb on - strand, within B158DRAFT_0005at 7.158 kb on + strand, within B158DRAFT_0005at 7.164 kb on + strand, within B158DRAFT_0005at 7.164 kb on + strand, within B158DRAFT_0005at 7.180 kb on + strand, within B158DRAFT_0005at 7.282 kb on + strandat 7.337 kb on + strandat 7.918 kb on + strand, within B158DRAFT_0007at 7.923 kb on + strand, within B158DRAFT_0007at 7.975 kb on + strand, within B158DRAFT_0007at 8.073 kb on + strand, within B158DRAFT_0007at 8.081 kb on - strand, within B158DRAFT_0007at 8.120 kb on - strand, within B158DRAFT_0007at 8.127 kb on - strand, within B158DRAFT_0007

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 20 mM
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5,257 + B158DRAFT_0004 0.24 -2.8
5,290 + B158DRAFT_0004 0.27 -2.6
5,332 - B158DRAFT_0004 0.30 -0.8
5,355 + B158DRAFT_0004 0.33 -1.1
5,363 - B158DRAFT_0004 0.33 -3.2
5,417 + B158DRAFT_0004 0.38 -2.7
5,417 + B158DRAFT_0004 0.38 -0.9
5,435 - B158DRAFT_0004 0.40 -3.1
5,439 + B158DRAFT_0004 0.40 -2.2
5,439 + B158DRAFT_0004 0.40 -0.8
5,439 + B158DRAFT_0004 0.40 -2.1
5,444 + B158DRAFT_0004 0.41 -3.4
5,447 - B158DRAFT_0004 0.41 -3.5
5,481 + B158DRAFT_0004 0.44 -3.2
5,481 + B158DRAFT_0004 0.44 -1.6
5,489 - B158DRAFT_0004 0.45 -2.4
5,489 - B158DRAFT_0004 0.45 -2.6
5,517 + B158DRAFT_0004 0.47 -0.4
5,576 - B158DRAFT_0004 0.52 -3.0
5,610 - B158DRAFT_0004 0.56 -3.1
5,642 - B158DRAFT_0004 0.58 -2.2
5,703 + B158DRAFT_0004 0.64 -1.4
5,703 + B158DRAFT_0004 0.64 -1.7
5,711 - B158DRAFT_0004 0.65 -0.8
5,711 - B158DRAFT_0004 0.65 -3.5
5,736 - B158DRAFT_0004 0.67 -1.8
5,760 - B158DRAFT_0004 0.69 -2.4
5,857 - B158DRAFT_0004 0.78 -2.1
5,866 + B158DRAFT_0004 0.79 -1.1
5,868 + B158DRAFT_0004 0.79 -1.4
5,874 - B158DRAFT_0004 0.79 -2.1
5,874 - B158DRAFT_0004 0.79 -2.0
5,874 - B158DRAFT_0004 0.79 -0.9
5,876 - B158DRAFT_0004 0.80 -3.1
5,876 - B158DRAFT_0004 0.80 -2.0
5,876 - B158DRAFT_0004 0.80 -2.4
5,958 - B158DRAFT_0004 0.87 -3.5
5,970 + B158DRAFT_0004 0.88 -2.5
5,970 + B158DRAFT_0004 0.88 -1.9
5,978 - B158DRAFT_0004 0.89 -2.8
5,980 + B158DRAFT_0004 0.89 -0.8
5,988 - B158DRAFT_0004 0.90 -1.8
6,002 - -3.4
6,004 + -3.3
6,012 - -3.3
6,014 + -1.4
6,019 + -2.1
6,070 + -3.0
6,203 - -0.1
6,224 + +0.1
6,287 + -0.2
6,287 + +0.0
6,311 + B158DRAFT_0005 0.11 -0.1
6,330 + B158DRAFT_0005 0.13 -0.1
6,330 + B158DRAFT_0005 0.13 -1.1
6,330 + B158DRAFT_0005 0.13 +0.4
6,330 + B158DRAFT_0005 0.13 +0.5
6,330 + B158DRAFT_0005 0.13 -2.4
6,330 + B158DRAFT_0005 0.13 +0.2
6,330 + B158DRAFT_0005 0.13 -1.1
6,338 - B158DRAFT_0005 0.14 -0.2
6,338 - B158DRAFT_0005 0.14 +0.0
6,338 - B158DRAFT_0005 0.14 -0.5
6,338 - B158DRAFT_0005 0.14 -0.1
6,338 - B158DRAFT_0005 0.14 -0.5
6,338 - B158DRAFT_0005 0.14 +0.1
6,340 + B158DRAFT_0005 0.14 -0.5
6,421 + B158DRAFT_0005 0.21 -0.1
6,449 + B158DRAFT_0005 0.24 -0.5
6,449 + B158DRAFT_0005 0.24 -0.3
6,464 + B158DRAFT_0005 0.25 +0.4
6,464 + B158DRAFT_0005 0.25 -0.4
6,464 + B158DRAFT_0005 0.25 +0.1
6,464 + B158DRAFT_0005 0.25 +0.1
6,464 - B158DRAFT_0005 0.25 +0.3
6,464 - B158DRAFT_0005 0.25 -0.6
6,472 - B158DRAFT_0005 0.26 -0.5
6,472 - B158DRAFT_0005 0.26 -0.2
6,545 + B158DRAFT_0005 0.32 -0.1
6,545 + B158DRAFT_0005 0.32 -0.6
6,545 + B158DRAFT_0005 0.32 -0.2
6,553 - B158DRAFT_0005 0.33 -0.5
6,553 - B158DRAFT_0005 0.33 -0.2
6,553 - B158DRAFT_0005 0.33 +0.2
6,592 - B158DRAFT_0005 0.36 -0.6
6,664 + B158DRAFT_0005 0.43 +0.1
6,838 - B158DRAFT_0005 0.58 -0.2
6,962 + B158DRAFT_0005 0.69 -0.4
6,962 + B158DRAFT_0005 0.69 -0.3
6,970 - B158DRAFT_0005 0.70 +0.5
6,988 + B158DRAFT_0005 0.71 -0.9
7,051 + B158DRAFT_0005 0.77 -0.3
7,051 + B158DRAFT_0005 0.77 -0.1
7,051 + B158DRAFT_0005 0.77 -0.5
7,072 - B158DRAFT_0005 0.79 -0.1
7,125 + B158DRAFT_0005 0.84 -0.3
7,141 - B158DRAFT_0005 0.85 +0.8
7,158 + B158DRAFT_0005 0.87 -0.9
7,164 + B158DRAFT_0005 0.87 -0.3
7,164 + B158DRAFT_0005 0.87 -0.1
7,180 + B158DRAFT_0005 0.88 -0.5
7,282 + -0.1
7,337 + -0.1
7,918 + B158DRAFT_0007 0.21 +0.2
7,923 + B158DRAFT_0007 0.22 -0.6
7,975 + B158DRAFT_0007 0.33 -0.3
8,073 + B158DRAFT_0007 0.53 +0.7
8,081 - B158DRAFT_0007 0.55 +0.0
8,120 - B158DRAFT_0007 0.63 +0.1
8,127 - B158DRAFT_0007 0.64 -0.2

Or see this region's nucleotide sequence