Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2208

Experiment: m.b. nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2206 and B158DRAFT_2207 are separated by 29 nucleotidesB158DRAFT_2207 and B158DRAFT_2208 are separated by 379 nucleotidesB158DRAFT_2208 and B158DRAFT_2209 are separated by 119 nucleotides B158DRAFT_2206: B158DRAFT_2206 - DNA-binding winged-HTH domains, at 351,676 to 353,898 _2206 B158DRAFT_2207: B158DRAFT_2207 - hypothetical protein, at 353,928 to 354,125 _2207 B158DRAFT_2208: B158DRAFT_2208 - transcriptional regulator, GntR family, at 354,505 to 355,227 _2208 B158DRAFT_2209: B158DRAFT_2209 - Bacterial virulence factor lipase N-terminal., at 355,347 to 357,488 _2209 Position (kb) 354 355 356Strain fitness (log2 ratio) -2 -1 0 1at 353.542 kb on - strand, within B158DRAFT_2206at 353.598 kb on + strand, within B158DRAFT_2206at 353.606 kb on - strand, within B158DRAFT_2206at 353.606 kb on - strand, within B158DRAFT_2206at 353.619 kb on - strand, within B158DRAFT_2206at 353.642 kb on - strand, within B158DRAFT_2206at 353.663 kb on + strand, within B158DRAFT_2206at 353.671 kb on - strand, within B158DRAFT_2206at 353.677 kb on + strandat 353.679 kb on - strandat 353.687 kb on + strandat 353.687 kb on + strandat 353.687 kb on + strandat 353.695 kb on - strandat 353.739 kb on + strandat 353.753 kb on + strandat 353.777 kb on - strandat 353.812 kb on - strandat 353.892 kb on + strandat 353.892 kb on + strandat 353.892 kb on + strandat 353.900 kb on - strandat 353.900 kb on - strandat 353.900 kb on - strandat 353.915 kb on - strandat 353.915 kb on - strandat 353.963 kb on + strand, within B158DRAFT_2207at 353.975 kb on + strand, within B158DRAFT_2207at 353.975 kb on + strand, within B158DRAFT_2207at 353.983 kb on - strand, within B158DRAFT_2207at 353.983 kb on - strand, within B158DRAFT_2207at 354.014 kb on + strand, within B158DRAFT_2207at 354.024 kb on + strand, within B158DRAFT_2207at 354.034 kb on + strand, within B158DRAFT_2207at 354.097 kb on + strand, within B158DRAFT_2207at 354.187 kb on + strandat 354.205 kb on + strandat 354.213 kb on - strandat 354.278 kb on + strandat 354.283 kb on + strandat 354.291 kb on - strandat 354.291 kb on - strandat 354.313 kb on + strandat 354.336 kb on + strandat 354.336 kb on + strandat 354.336 kb on + strandat 354.339 kb on - strandat 354.344 kb on - strandat 354.504 kb on - strandat 354.515 kb on - strandat 354.531 kb on - strandat 354.746 kb on + strand, within B158DRAFT_2208at 354.754 kb on - strand, within B158DRAFT_2208at 354.764 kb on - strand, within B158DRAFT_2208at 354.799 kb on - strand, within B158DRAFT_2208at 354.819 kb on + strand, within B158DRAFT_2208at 354.943 kb on + strand, within B158DRAFT_2208at 354.996 kb on - strand, within B158DRAFT_2208at 355.065 kb on - strand, within B158DRAFT_2208at 355.118 kb on - strand, within B158DRAFT_2208at 355.119 kb on - strand, within B158DRAFT_2208at 355.124 kb on - strand, within B158DRAFT_2208at 355.124 kb on - strand, within B158DRAFT_2208at 355.129 kb on - strand, within B158DRAFT_2208at 355.129 kb on - strand, within B158DRAFT_2208at 355.185 kb on + strandat 355.185 kb on + strandat 355.185 kb on + strandat 355.193 kb on - strandat 355.205 kb on + strandat 355.234 kb on + strandat 355.248 kb on + strandat 355.256 kb on - strandat 355.271 kb on + strandat 355.322 kb on - strandat 355.356 kb on + strandat 355.376 kb on + strandat 355.382 kb on - strandat 355.382 kb on - strandat 355.397 kb on + strandat 355.419 kb on - strandat 355.440 kb on + strandat 355.446 kb on + strandat 355.555 kb on + strandat 355.620 kb on - strand, within B158DRAFT_2209at 355.633 kb on + strand, within B158DRAFT_2209at 355.641 kb on - strand, within B158DRAFT_2209at 355.641 kb on - strand, within B158DRAFT_2209at 355.660 kb on + strand, within B158DRAFT_2209at 355.660 kb on + strand, within B158DRAFT_2209at 355.660 kb on + strand, within B158DRAFT_2209at 355.660 kb on + strand, within B158DRAFT_2209at 355.660 kb on + strand, within B158DRAFT_2209at 355.660 kb on + strand, within B158DRAFT_2209at 355.660 kb on + strand, within B158DRAFT_2209at 355.668 kb on - strand, within B158DRAFT_2209at 355.668 kb on - strand, within B158DRAFT_2209at 355.668 kb on - strand, within B158DRAFT_2209at 355.677 kb on + strand, within B158DRAFT_2209at 355.694 kb on + strand, within B158DRAFT_2209at 355.705 kb on + strand, within B158DRAFT_2209at 355.713 kb on - strand, within B158DRAFT_2209at 355.722 kb on - strand, within B158DRAFT_2209at 355.749 kb on - strand, within B158DRAFT_2209at 355.784 kb on + strand, within B158DRAFT_2209at 355.818 kb on + strand, within B158DRAFT_2209at 355.818 kb on + strand, within B158DRAFT_2209at 355.826 kb on - strand, within B158DRAFT_2209at 355.910 kb on + strand, within B158DRAFT_2209at 355.989 kb on + strand, within B158DRAFT_2209at 355.989 kb on + strand, within B158DRAFT_2209at 355.991 kb on + strand, within B158DRAFT_2209at 355.997 kb on - strand, within B158DRAFT_2209at 355.998 kb on - strand, within B158DRAFT_2209at 356.007 kb on - strand, within B158DRAFT_2209at 356.026 kb on - strand, within B158DRAFT_2209at 356.031 kb on + strand, within B158DRAFT_2209at 356.067 kb on + strand, within B158DRAFT_2209at 356.075 kb on - strand, within B158DRAFT_2209at 356.075 kb on - strand, within B158DRAFT_2209at 356.096 kb on - strand, within B158DRAFT_2209at 356.148 kb on + strand, within B158DRAFT_2209at 356.148 kb on + strand, within B158DRAFT_2209at 356.167 kb on + strand, within B158DRAFT_2209

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM
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353,542 - B158DRAFT_2206 0.84 -0.5
353,598 + B158DRAFT_2206 0.86 +0.2
353,606 - B158DRAFT_2206 0.87 -0.2
353,606 - B158DRAFT_2206 0.87 +0.3
353,619 - B158DRAFT_2206 0.87 -0.8
353,642 - B158DRAFT_2206 0.88 -0.8
353,663 + B158DRAFT_2206 0.89 +0.5
353,671 - B158DRAFT_2206 0.90 -1.6
353,677 + -0.3
353,679 - +0.1
353,687 + -0.4
353,687 + -0.7
353,687 + -0.4
353,695 - -0.1
353,739 + +0.2
353,753 + -0.2
353,777 - +0.2
353,812 - -0.6
353,892 + +0.3
353,892 + -0.3
353,892 + -0.4
353,900 - -0.1
353,900 - -0.8
353,900 - +0.2
353,915 - +0.0
353,915 - +0.4
353,963 + B158DRAFT_2207 0.18 +0.1
353,975 + B158DRAFT_2207 0.24 -1.0
353,975 + B158DRAFT_2207 0.24 +0.6
353,983 - B158DRAFT_2207 0.28 +1.0
353,983 - B158DRAFT_2207 0.28 -0.1
354,014 + B158DRAFT_2207 0.43 +0.4
354,024 + B158DRAFT_2207 0.48 -0.1
354,034 + B158DRAFT_2207 0.54 +0.4
354,097 + B158DRAFT_2207 0.85 -0.0
354,187 + +0.4
354,205 + -0.7
354,213 - -0.2
354,278 + +0.4
354,283 + +0.7
354,291 - -0.4
354,291 - +0.6
354,313 + -0.0
354,336 + -0.4
354,336 + -0.1
354,336 + -0.2
354,339 - -0.5
354,344 - -0.2
354,504 - -0.4
354,515 - +0.2
354,531 - +0.2
354,746 + B158DRAFT_2208 0.33 -1.5
354,754 - B158DRAFT_2208 0.34 -0.3
354,764 - B158DRAFT_2208 0.36 +0.2
354,799 - B158DRAFT_2208 0.41 -0.2
354,819 + B158DRAFT_2208 0.43 +0.7
354,943 + B158DRAFT_2208 0.61 -0.2
354,996 - B158DRAFT_2208 0.68 -0.7
355,065 - B158DRAFT_2208 0.77 -0.4
355,118 - B158DRAFT_2208 0.85 -0.7
355,119 - B158DRAFT_2208 0.85 -0.2
355,124 - B158DRAFT_2208 0.86 -0.1
355,124 - B158DRAFT_2208 0.86 +0.1
355,129 - B158DRAFT_2208 0.86 -0.4
355,129 - B158DRAFT_2208 0.86 +0.1
355,185 + +0.0
355,185 + +0.2
355,185 + -0.6
355,193 - -0.0
355,205 + +0.3
355,234 + +0.1
355,248 + +0.4
355,256 - +0.3
355,271 + -0.3
355,322 - -2.1
355,356 + +0.7
355,376 + +0.4
355,382 - +1.0
355,382 - -0.8
355,397 + +0.3
355,419 - +0.7
355,440 + -0.3
355,446 + -0.6
355,555 + +0.7
355,620 - B158DRAFT_2209 0.13 +0.2
355,633 + B158DRAFT_2209 0.13 -0.1
355,641 - B158DRAFT_2209 0.14 +0.0
355,641 - B158DRAFT_2209 0.14 +0.3
355,660 + B158DRAFT_2209 0.15 +0.1
355,660 + B158DRAFT_2209 0.15 +0.2
355,660 + B158DRAFT_2209 0.15 +0.1
355,660 + B158DRAFT_2209 0.15 +0.4
355,660 + B158DRAFT_2209 0.15 -0.0
355,660 + B158DRAFT_2209 0.15 +0.0
355,660 + B158DRAFT_2209 0.15 -0.2
355,668 - B158DRAFT_2209 0.15 -0.1
355,668 - B158DRAFT_2209 0.15 +0.5
355,668 - B158DRAFT_2209 0.15 -0.0
355,677 + B158DRAFT_2209 0.15 -0.4
355,694 + B158DRAFT_2209 0.16 +0.2
355,705 + B158DRAFT_2209 0.17 -0.1
355,713 - B158DRAFT_2209 0.17 +0.3
355,722 - B158DRAFT_2209 0.18 +0.1
355,749 - B158DRAFT_2209 0.19 -0.5
355,784 + B158DRAFT_2209 0.20 +0.3
355,818 + B158DRAFT_2209 0.22 -0.6
355,818 + B158DRAFT_2209 0.22 -0.7
355,826 - B158DRAFT_2209 0.22 -0.3
355,910 + B158DRAFT_2209 0.26 -0.0
355,989 + B158DRAFT_2209 0.30 -0.4
355,989 + B158DRAFT_2209 0.30 +0.1
355,991 + B158DRAFT_2209 0.30 -0.5
355,997 - B158DRAFT_2209 0.30 +0.1
355,998 - B158DRAFT_2209 0.30 -0.0
356,007 - B158DRAFT_2209 0.31 +0.4
356,026 - B158DRAFT_2209 0.32 -2.2
356,031 + B158DRAFT_2209 0.32 -0.7
356,067 + B158DRAFT_2209 0.34 +0.4
356,075 - B158DRAFT_2209 0.34 +0.7
356,075 - B158DRAFT_2209 0.34 +0.4
356,096 - B158DRAFT_2209 0.35 -0.4
356,148 + B158DRAFT_2209 0.37 -1.9
356,148 + B158DRAFT_2209 0.37 -0.2
356,167 + B158DRAFT_2209 0.38 +0.4

Or see this region's nucleotide sequence