Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2012

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2010 and B158DRAFT_2011 overlap by 16 nucleotidesB158DRAFT_2011 and B158DRAFT_2012 are separated by 363 nucleotidesB158DRAFT_2012 and B158DRAFT_2013 are separated by 14 nucleotides B158DRAFT_2010: B158DRAFT_2010 - hypothetical protein, at 140,771 to 141,127 _2010 B158DRAFT_2011: B158DRAFT_2011 - hypothetical protein, at 141,112 to 141,459 _2011 B158DRAFT_2012: B158DRAFT_2012 - replicative DNA helicase, at 141,823 to 143,208 _2012 B158DRAFT_2013: B158DRAFT_2013 - alanine racemase, at 143,223 to 144,317 _2013 Position (kb) 141 142 143 144Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 140.897 kb on - strand, within B158DRAFT_2010at 140.897 kb on - strand, within B158DRAFT_2010at 140.901 kb on + strand, within B158DRAFT_2010at 140.923 kb on - strand, within B158DRAFT_2010at 141.081 kb on + strand, within B158DRAFT_2010at 141.154 kb on + strand, within B158DRAFT_2011at 141.156 kb on - strand, within B158DRAFT_2011at 141.213 kb on + strand, within B158DRAFT_2011at 141.226 kb on - strand, within B158DRAFT_2011at 141.263 kb on + strand, within B158DRAFT_2011at 141.271 kb on - strand, within B158DRAFT_2011at 141.309 kb on - strand, within B158DRAFT_2011at 141.343 kb on + strand, within B158DRAFT_2011at 141.370 kb on - strand, within B158DRAFT_2011at 141.489 kb on + strandat 141.545 kb on + strandat 141.553 kb on - strandat 141.611 kb on - strandat 141.629 kb on + strandat 141.704 kb on + strandat 141.745 kb on + strandat 143.318 kb on + strandat 143.318 kb on + strandat 143.318 kb on + strandat 143.318 kb on + strandat 143.324 kb on + strandat 143.326 kb on - strandat 143.326 kb on - strandat 143.344 kb on + strand, within B158DRAFT_2013at 143.344 kb on + strand, within B158DRAFT_2013at 143.352 kb on - strand, within B158DRAFT_2013at 143.369 kb on + strand, within B158DRAFT_2013at 143.443 kb on + strand, within B158DRAFT_2013at 143.499 kb on - strand, within B158DRAFT_2013at 143.524 kb on - strand, within B158DRAFT_2013at 143.580 kb on + strand, within B158DRAFT_2013at 143.601 kb on + strand, within B158DRAFT_2013at 143.642 kb on + strand, within B158DRAFT_2013at 143.647 kb on + strand, within B158DRAFT_2013at 143.663 kb on + strand, within B158DRAFT_2013at 143.675 kb on + strand, within B158DRAFT_2013at 143.675 kb on + strand, within B158DRAFT_2013at 143.683 kb on - strand, within B158DRAFT_2013at 143.693 kb on + strand, within B158DRAFT_2013at 143.755 kb on - strand, within B158DRAFT_2013at 143.763 kb on - strand, within B158DRAFT_2013at 143.777 kb on + strand, within B158DRAFT_2013at 143.835 kb on + strand, within B158DRAFT_2013at 143.835 kb on + strand, within B158DRAFT_2013at 143.856 kb on + strand, within B158DRAFT_2013at 143.880 kb on + strand, within B158DRAFT_2013at 143.888 kb on - strand, within B158DRAFT_2013at 144.006 kb on - strand, within B158DRAFT_2013at 144.083 kb on + strand, within B158DRAFT_2013at 144.088 kb on + strand, within B158DRAFT_2013at 144.088 kb on + strand, within B158DRAFT_2013at 144.088 kb on + strand, within B158DRAFT_2013at 144.088 kb on + strand, within B158DRAFT_2013at 144.091 kb on - strand, within B158DRAFT_2013at 144.096 kb on - strand, within B158DRAFT_2013at 144.096 kb on - strand, within B158DRAFT_2013at 144.115 kb on - strand, within B158DRAFT_2013at 144.163 kb on + strand, within B158DRAFT_2013at 144.163 kb on + strand, within B158DRAFT_2013at 144.163 kb on + strand, within B158DRAFT_2013at 144.171 kb on - strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.186 kb on + strand, within B158DRAFT_2013at 144.186 kb on + strand, within B158DRAFT_2013at 144.189 kb on + strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.197 kb on - strand, within B158DRAFT_2013

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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140,897 - B158DRAFT_2010 0.35 -0.2
140,897 - B158DRAFT_2010 0.35 -1.2
140,901 + B158DRAFT_2010 0.36 -0.3
140,923 - B158DRAFT_2010 0.43 +0.3
141,081 + B158DRAFT_2010 0.87 -0.1
141,154 + B158DRAFT_2011 0.12 -0.5
141,156 - B158DRAFT_2011 0.13 -0.2
141,213 + B158DRAFT_2011 0.29 -0.4
141,226 - B158DRAFT_2011 0.33 -0.1
141,263 + B158DRAFT_2011 0.43 -0.0
141,271 - B158DRAFT_2011 0.46 -0.1
141,309 - B158DRAFT_2011 0.57 -0.2
141,343 + B158DRAFT_2011 0.66 +0.3
141,370 - B158DRAFT_2011 0.74 -0.1
141,489 + +0.3
141,545 + +1.1
141,553 - -0.4
141,611 - -0.5
141,629 + -0.3
141,704 + -0.3
141,745 + -0.1
143,318 + -1.2
143,318 + -1.2
143,318 + -4.1
143,318 + -4.5
143,324 + -0.8
143,326 - -2.6
143,326 - -2.3
143,344 + B158DRAFT_2013 0.11 -2.3
143,344 + B158DRAFT_2013 0.11 -2.8
143,352 - B158DRAFT_2013 0.12 -1.1
143,369 + B158DRAFT_2013 0.13 -0.7
143,443 + B158DRAFT_2013 0.20 -1.6
143,499 - B158DRAFT_2013 0.25 -1.6
143,524 - B158DRAFT_2013 0.27 -2.9
143,580 + B158DRAFT_2013 0.33 -1.3
143,601 + B158DRAFT_2013 0.35 -2.1
143,642 + B158DRAFT_2013 0.38 -1.3
143,647 + B158DRAFT_2013 0.39 -2.6
143,663 + B158DRAFT_2013 0.40 -2.3
143,675 + B158DRAFT_2013 0.41 -2.3
143,675 + B158DRAFT_2013 0.41 -2.4
143,683 - B158DRAFT_2013 0.42 -4.2
143,693 + B158DRAFT_2013 0.43 -2.0
143,755 - B158DRAFT_2013 0.49 -2.6
143,763 - B158DRAFT_2013 0.49 -2.8
143,777 + B158DRAFT_2013 0.51 -1.9
143,835 + B158DRAFT_2013 0.56 -3.2
143,835 + B158DRAFT_2013 0.56 -2.0
143,856 + B158DRAFT_2013 0.58 -1.6
143,880 + B158DRAFT_2013 0.60 -2.2
143,888 - B158DRAFT_2013 0.61 -1.3
144,006 - B158DRAFT_2013 0.72 -1.2
144,083 + B158DRAFT_2013 0.79 -2.4
144,088 + B158DRAFT_2013 0.79 -2.5
144,088 + B158DRAFT_2013 0.79 -2.4
144,088 + B158DRAFT_2013 0.79 -1.6
144,088 + B158DRAFT_2013 0.79 -1.6
144,091 - B158DRAFT_2013 0.79 -2.4
144,096 - B158DRAFT_2013 0.80 -3.4
144,096 - B158DRAFT_2013 0.80 -1.6
144,115 - B158DRAFT_2013 0.81 -1.4
144,163 + B158DRAFT_2013 0.86 -2.6
144,163 + B158DRAFT_2013 0.86 -1.5
144,163 + B158DRAFT_2013 0.86 -1.9
144,171 - B158DRAFT_2013 0.87 -2.3
144,184 + B158DRAFT_2013 0.88 -1.4
144,184 + B158DRAFT_2013 0.88 -1.3
144,184 + B158DRAFT_2013 0.88 -3.1
144,184 + B158DRAFT_2013 0.88 -1.8
144,184 + B158DRAFT_2013 0.88 -3.3
144,184 + B158DRAFT_2013 0.88 -1.8
144,184 + B158DRAFT_2013 0.88 -1.4
144,184 + B158DRAFT_2013 0.88 -1.2
144,184 + B158DRAFT_2013 0.88 -1.5
144,184 + B158DRAFT_2013 0.88 -2.3
144,184 + B158DRAFT_2013 0.88 -2.7
144,184 + B158DRAFT_2013 0.88 -1.4
144,184 + B158DRAFT_2013 0.88 -1.5
144,184 + B158DRAFT_2013 0.88 -1.6
144,184 + B158DRAFT_2013 0.88 -1.1
144,184 + B158DRAFT_2013 0.88 -2.5
144,184 + B158DRAFT_2013 0.88 -1.0
144,186 + B158DRAFT_2013 0.88 -1.1
144,186 + B158DRAFT_2013 0.88 -2.6
144,189 + B158DRAFT_2013 0.88 -1.6
144,192 - B158DRAFT_2013 0.88 -1.5
144,192 - B158DRAFT_2013 0.88 -2.5
144,192 - B158DRAFT_2013 0.88 -2.8
144,192 - B158DRAFT_2013 0.88 -1.0
144,192 - B158DRAFT_2013 0.88 -0.3
144,192 - B158DRAFT_2013 0.88 -1.5
144,192 - B158DRAFT_2013 0.88 -1.8
144,192 - B158DRAFT_2013 0.88 -1.9
144,192 - B158DRAFT_2013 0.88 -1.8
144,192 - B158DRAFT_2013 0.88 -2.1
144,192 - B158DRAFT_2013 0.88 -1.5
144,192 - B158DRAFT_2013 0.88 -1.0
144,192 - B158DRAFT_2013 0.88 -2.1
144,192 - B158DRAFT_2013 0.88 -2.7
144,192 - B158DRAFT_2013 0.88 -2.8
144,192 - B158DRAFT_2013 0.88 -2.5
144,192 - B158DRAFT_2013 0.88 -2.1
144,192 - B158DRAFT_2013 0.88 -1.4
144,192 - B158DRAFT_2013 0.88 -1.6
144,192 - B158DRAFT_2013 0.88 +0.1
144,197 - B158DRAFT_2013 0.89 -2.6

Or see this region's nucleotide sequence