Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1322

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1320 and B158DRAFT_1321 are separated by 10 nucleotidesB158DRAFT_1321 and B158DRAFT_1322 are separated by 13 nucleotidesB158DRAFT_1322 and B158DRAFT_1323 are separated by 23 nucleotidesB158DRAFT_1323 and B158DRAFT_1324 overlap by 1 nucleotides B158DRAFT_1320: B158DRAFT_1320 - 3-isopropylmalate dehydratase, small subunit, at 1,364,769 to 1,365,410 _1320 B158DRAFT_1321: B158DRAFT_1321 - hypothetical protein, at 1,365,421 to 1,365,828 _1321 B158DRAFT_1322: B158DRAFT_1322 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 1,365,842 to 1,366,918 _1322 B158DRAFT_1323: B158DRAFT_1323 - heme ABC exporter, ATP-binding protein CcmA, at 1,366,942 to 1,367,568 _1323 B158DRAFT_1324: B158DRAFT_1324 - heme exporter protein CcmB, at 1,367,568 to 1,368,239 _1324 Position (kb) 1365 1366 1367Strain fitness (log2 ratio) -3 -2 -1 0 1at 1364.919 kb on - strand, within B158DRAFT_1320at 1364.936 kb on + strand, within B158DRAFT_1320at 1364.970 kb on + strand, within B158DRAFT_1320at 1365.251 kb on + strand, within B158DRAFT_1320at 1365.334 kb on + strand, within B158DRAFT_1320at 1365.334 kb on + strand, within B158DRAFT_1320at 1365.388 kb on + strandat 1365.496 kb on + strand, within B158DRAFT_1321at 1365.508 kb on + strand, within B158DRAFT_1321at 1365.516 kb on - strand, within B158DRAFT_1321at 1365.541 kb on + strand, within B158DRAFT_1321at 1365.549 kb on - strand, within B158DRAFT_1321at 1365.615 kb on + strand, within B158DRAFT_1321at 1365.615 kb on + strand, within B158DRAFT_1321at 1365.815 kb on + strandat 1365.951 kb on - strand, within B158DRAFT_1322at 1365.981 kb on + strand, within B158DRAFT_1322at 1366.000 kb on + strand, within B158DRAFT_1322at 1366.054 kb on - strand, within B158DRAFT_1322at 1366.151 kb on + strand, within B158DRAFT_1322at 1366.178 kb on + strand, within B158DRAFT_1322at 1366.220 kb on + strand, within B158DRAFT_1322at 1366.294 kb on + strand, within B158DRAFT_1322at 1366.496 kb on + strand, within B158DRAFT_1322at 1366.518 kb on - strand, within B158DRAFT_1322at 1366.539 kb on + strand, within B158DRAFT_1322at 1366.539 kb on + strand, within B158DRAFT_1322at 1366.549 kb on - strand, within B158DRAFT_1322at 1366.657 kb on + strand, within B158DRAFT_1322at 1366.657 kb on + strand, within B158DRAFT_1322at 1366.657 kb on + strand, within B158DRAFT_1322at 1366.657 kb on + strand, within B158DRAFT_1322at 1366.663 kb on + strand, within B158DRAFT_1322at 1366.663 kb on + strand, within B158DRAFT_1322at 1366.663 kb on + strand, within B158DRAFT_1322at 1366.665 kb on - strand, within B158DRAFT_1322at 1366.679 kb on + strand, within B158DRAFT_1322at 1366.679 kb on + strand, within B158DRAFT_1322at 1366.679 kb on + strand, within B158DRAFT_1322at 1366.679 kb on + strand, within B158DRAFT_1322at 1366.714 kb on - strand, within B158DRAFT_1322at 1366.719 kb on - strand, within B158DRAFT_1322at 1366.731 kb on + strand, within B158DRAFT_1322at 1366.846 kb on + strandat 1366.846 kb on + strandat 1366.846 kb on + strandat 1366.846 kb on + strandat 1366.846 kb on + strandat 1366.846 kb on + strandat 1366.854 kb on - strandat 1366.854 kb on - strandat 1366.969 kb on + strandat 1366.969 kb on + strandat 1367.014 kb on + strand, within B158DRAFT_1323at 1367.068 kb on + strand, within B158DRAFT_1323at 1367.076 kb on - strand, within B158DRAFT_1323at 1367.111 kb on - strand, within B158DRAFT_1323at 1367.271 kb on + strand, within B158DRAFT_1323at 1367.296 kb on + strand, within B158DRAFT_1323at 1367.296 kb on + strand, within B158DRAFT_1323at 1367.304 kb on - strand, within B158DRAFT_1323at 1367.327 kb on - strand, within B158DRAFT_1323at 1367.369 kb on - strand, within B158DRAFT_1323at 1367.495 kb on + strand, within B158DRAFT_1323at 1367.562 kb on + strandat 1367.582 kb on + strandat 1367.582 kb on + strandat 1367.678 kb on + strand, within B158DRAFT_1324at 1367.683 kb on + strand, within B158DRAFT_1324at 1367.691 kb on - strand, within B158DRAFT_1324at 1367.691 kb on - strand, within B158DRAFT_1324at 1367.736 kb on + strand, within B158DRAFT_1324at 1367.736 kb on + strand, within B158DRAFT_1324at 1367.741 kb on + strand, within B158DRAFT_1324at 1367.741 kb on + strand, within B158DRAFT_1324at 1367.741 kb on + strand, within B158DRAFT_1324at 1367.749 kb on - strand, within B158DRAFT_1324at 1367.810 kb on - strand, within B158DRAFT_1324at 1367.810 kb on - strand, within B158DRAFT_1324

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,364,919 - B158DRAFT_1320 0.23 -0.4
1,364,936 + B158DRAFT_1320 0.26 -1.1
1,364,970 + B158DRAFT_1320 0.31 -0.7
1,365,251 + B158DRAFT_1320 0.75 -2.3
1,365,334 + B158DRAFT_1320 0.88 -2.7
1,365,334 + B158DRAFT_1320 0.88 -2.0
1,365,388 + +0.1
1,365,496 + B158DRAFT_1321 0.18 -0.6
1,365,508 + B158DRAFT_1321 0.21 +0.7
1,365,516 - B158DRAFT_1321 0.23 -2.0
1,365,541 + B158DRAFT_1321 0.29 -0.1
1,365,549 - B158DRAFT_1321 0.31 -1.1
1,365,615 + B158DRAFT_1321 0.48 -0.1
1,365,615 + B158DRAFT_1321 0.48 +0.0
1,365,815 + -2.5
1,365,951 - B158DRAFT_1322 0.10 -1.6
1,365,981 + B158DRAFT_1322 0.13 -3.0
1,366,000 + B158DRAFT_1322 0.15 -3.4
1,366,054 - B158DRAFT_1322 0.20 +0.2
1,366,151 + B158DRAFT_1322 0.29 -1.2
1,366,178 + B158DRAFT_1322 0.31 -3.4
1,366,220 + B158DRAFT_1322 0.35 -2.2
1,366,294 + B158DRAFT_1322 0.42 -1.4
1,366,496 + B158DRAFT_1322 0.61 -2.3
1,366,518 - B158DRAFT_1322 0.63 -2.1
1,366,539 + B158DRAFT_1322 0.65 -3.6
1,366,539 + B158DRAFT_1322 0.65 -1.8
1,366,549 - B158DRAFT_1322 0.66 -2.0
1,366,657 + B158DRAFT_1322 0.76 -3.6
1,366,657 + B158DRAFT_1322 0.76 -0.9
1,366,657 + B158DRAFT_1322 0.76 -2.2
1,366,657 + B158DRAFT_1322 0.76 -3.0
1,366,663 + B158DRAFT_1322 0.76 -2.6
1,366,663 + B158DRAFT_1322 0.76 -2.2
1,366,663 + B158DRAFT_1322 0.76 -1.8
1,366,665 - B158DRAFT_1322 0.76 -1.0
1,366,679 + B158DRAFT_1322 0.78 -2.2
1,366,679 + B158DRAFT_1322 0.78 -2.2
1,366,679 + B158DRAFT_1322 0.78 -1.6
1,366,679 + B158DRAFT_1322 0.78 -1.8
1,366,714 - B158DRAFT_1322 0.81 -1.8
1,366,719 - B158DRAFT_1322 0.81 -2.7
1,366,731 + B158DRAFT_1322 0.83 -2.6
1,366,846 + -1.6
1,366,846 + -1.6
1,366,846 + -1.5
1,366,846 + -2.5
1,366,846 + -1.8
1,366,846 + -1.5
1,366,854 - +0.2
1,366,854 - -0.8
1,366,969 + -0.2
1,366,969 + +0.2
1,367,014 + B158DRAFT_1323 0.11 -0.4
1,367,068 + B158DRAFT_1323 0.20 +0.1
1,367,076 - B158DRAFT_1323 0.21 -0.2
1,367,111 - B158DRAFT_1323 0.27 +0.0
1,367,271 + B158DRAFT_1323 0.52 -0.8
1,367,296 + B158DRAFT_1323 0.56 -2.1
1,367,296 + B158DRAFT_1323 0.56 +0.2
1,367,304 - B158DRAFT_1323 0.58 -0.7
1,367,327 - B158DRAFT_1323 0.61 +1.0
1,367,369 - B158DRAFT_1323 0.68 -0.0
1,367,495 + B158DRAFT_1323 0.88 +0.5
1,367,562 + +0.3
1,367,582 + -0.0
1,367,582 + +0.6
1,367,678 + B158DRAFT_1324 0.16 +1.0
1,367,683 + B158DRAFT_1324 0.17 -0.2
1,367,691 - B158DRAFT_1324 0.18 +0.9
1,367,691 - B158DRAFT_1324 0.18 +0.1
1,367,736 + B158DRAFT_1324 0.25 +0.4
1,367,736 + B158DRAFT_1324 0.25 -1.0
1,367,741 + B158DRAFT_1324 0.26 -0.0
1,367,741 + B158DRAFT_1324 0.26 +0.5
1,367,741 + B158DRAFT_1324 0.26 -0.2
1,367,749 - B158DRAFT_1324 0.27 -0.6
1,367,810 - B158DRAFT_1324 0.36 -1.0
1,367,810 - B158DRAFT_1324 0.36 +0.4

Or see this region's nucleotide sequence