Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1264

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1261 and B158DRAFT_1262 are separated by 31 nucleotidesB158DRAFT_1262 and B158DRAFT_1263 overlap by 23 nucleotidesB158DRAFT_1263 and B158DRAFT_1264 are separated by 96 nucleotidesB158DRAFT_1264 and B158DRAFT_1265 are separated by 141 nucleotidesB158DRAFT_1265 and B158DRAFT_1267 are separated by 452 nucleotides B158DRAFT_1261: B158DRAFT_1261 - phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20), at 1,298,136 to 1,300,514 _1261 B158DRAFT_1262: B158DRAFT_1262 - integration host factor, alpha subunit, at 1,300,546 to 1,300,848 _1262 B158DRAFT_1263: B158DRAFT_1263 - Predicted transcriptional regulators, at 1,300,826 to 1,301,176 _1263 B158DRAFT_1264: B158DRAFT_1264 - tRNA_Pro_GGG, at 1,301,273 to 1,301,349 _1264 B158DRAFT_1265: B158DRAFT_1265 - tRNA_Ser_TGA, at 1,301,491 to 1,301,581 _1265 B158DRAFT_1267: B158DRAFT_1267 - Superfamily II DNA/RNA helicases, SNF2 family, at 1,302,034 to 1,304,916 _1267 Position (kb) 1301 1302Strain fitness (log2 ratio) -3 -2 -1 0 1at 1300.588 kb on + strand, within B158DRAFT_1262at 1300.622 kb on + strand, within B158DRAFT_1262at 1300.644 kb on + strand, within B158DRAFT_1262at 1300.644 kb on + strand, within B158DRAFT_1262at 1300.725 kb on + strand, within B158DRAFT_1262at 1300.732 kb on - strand, within B158DRAFT_1262at 1300.784 kb on + strand, within B158DRAFT_1262at 1300.785 kb on + strand, within B158DRAFT_1262at 1300.793 kb on - strand, within B158DRAFT_1262at 1300.826 kb on + strandat 1301.169 kb on - strandat 1301.179 kb on - strandat 1301.228 kb on + strandat 1301.230 kb on + strandat 1301.240 kb on - strandat 1301.287 kb on + strand, within B158DRAFT_1264at 1301.287 kb on + strand, within B158DRAFT_1264at 1301.293 kb on - strand, within B158DRAFT_1264at 1301.300 kb on + strand, within B158DRAFT_1264at 1301.308 kb on + strand, within B158DRAFT_1264at 1301.310 kb on + strand, within B158DRAFT_1264at 1301.316 kb on - strand, within B158DRAFT_1264at 1301.318 kb on + strand, within B158DRAFT_1264at 1301.326 kb on + strand, within B158DRAFT_1264at 1301.326 kb on - strand, within B158DRAFT_1264at 1301.326 kb on - strand, within B158DRAFT_1264at 1301.326 kb on - strand, within B158DRAFT_1264at 1301.335 kb on - strand, within B158DRAFT_1264at 1301.396 kb on - strandat 1301.401 kb on - strandat 1301.648 kb on + strandat 1301.718 kb on - strandat 1301.741 kb on - strandat 1301.741 kb on - strandat 1301.818 kb on - strandat 1301.894 kb on + strandat 1301.941 kb on + strandat 1301.980 kb on - strandat 1302.039 kb on + strandat 1302.039 kb on + strandat 1302.044 kb on + strandat 1302.044 kb on + strandat 1302.068 kb on - strandat 1302.068 kb on - strandat 1302.103 kb on + strandat 1302.114 kb on + strandat 1302.122 kb on - strandat 1302.159 kb on + strandat 1302.167 kb on - strandat 1302.177 kb on - strandat 1302.177 kb on - strandat 1302.177 kb on - strandat 1302.183 kb on + strandat 1302.183 kb on + strandat 1302.183 kb on + strandat 1302.183 kb on + strandat 1302.183 kb on + strandat 1302.190 kb on + strandat 1302.191 kb on - strandat 1302.191 kb on - strandat 1302.191 kb on - strandat 1302.191 kb on - strandat 1302.191 kb on - strandat 1302.191 kb on - strandat 1302.191 kb on - strandat 1302.202 kb on + strandat 1302.202 kb on + strandat 1302.202 kb on + strandat 1302.210 kb on - strandat 1302.225 kb on - strandat 1302.239 kb on - strandat 1302.250 kb on + strandat 1302.250 kb on + strandat 1302.258 kb on - strandat 1302.258 kb on - strandat 1302.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,300,588 + B158DRAFT_1262 0.14 -0.4
1,300,622 + B158DRAFT_1262 0.25 -2.0
1,300,644 + B158DRAFT_1262 0.32 -2.2
1,300,644 + B158DRAFT_1262 0.32 -2.0
1,300,725 + B158DRAFT_1262 0.59 -2.5
1,300,732 - B158DRAFT_1262 0.61 -1.3
1,300,784 + B158DRAFT_1262 0.79 -0.4
1,300,785 + B158DRAFT_1262 0.79 -2.0
1,300,793 - B158DRAFT_1262 0.82 -1.4
1,300,826 + -3.4
1,301,169 - -0.1
1,301,179 - +0.2
1,301,228 + +0.0
1,301,230 + -0.4
1,301,240 - -0.3
1,301,287 + B158DRAFT_1264 0.18 +0.0
1,301,287 + B158DRAFT_1264 0.18 -0.4
1,301,293 - B158DRAFT_1264 0.26 -0.3
1,301,300 + B158DRAFT_1264 0.35 +0.6
1,301,308 + B158DRAFT_1264 0.45 -0.0
1,301,310 + B158DRAFT_1264 0.48 +0.2
1,301,316 - B158DRAFT_1264 0.56 -0.2
1,301,318 + B158DRAFT_1264 0.58 -0.6
1,301,326 + B158DRAFT_1264 0.69 -0.2
1,301,326 - B158DRAFT_1264 0.69 +0.7
1,301,326 - B158DRAFT_1264 0.69 -0.2
1,301,326 - B158DRAFT_1264 0.69 -0.9
1,301,335 - B158DRAFT_1264 0.81 -1.1
1,301,396 - -0.2
1,301,401 - +0.0
1,301,648 + -0.2
1,301,718 - -0.4
1,301,741 - -0.2
1,301,741 - -0.3
1,301,818 - +0.2
1,301,894 + +0.2
1,301,941 + +0.6
1,301,980 - -0.1
1,302,039 + +0.0
1,302,039 + +0.4
1,302,044 + -0.2
1,302,044 + +0.1
1,302,068 - -0.5
1,302,068 - -0.6
1,302,103 + +0.4
1,302,114 + +0.7
1,302,122 - -0.0
1,302,159 + -0.2
1,302,167 - +0.6
1,302,177 - -0.4
1,302,177 - -0.7
1,302,177 - +0.0
1,302,183 + -0.2
1,302,183 + -0.3
1,302,183 + -0.1
1,302,183 + +0.2
1,302,183 + +0.1
1,302,190 + -0.4
1,302,191 - -0.0
1,302,191 - -1.2
1,302,191 - -0.5
1,302,191 - -0.1
1,302,191 - -1.6
1,302,191 - -0.2
1,302,191 - +0.5
1,302,202 + -0.0
1,302,202 + +0.3
1,302,202 + +0.5
1,302,210 - -0.1
1,302,225 - -0.5
1,302,239 - -0.1
1,302,250 + -0.3
1,302,250 + -0.8
1,302,258 - -0.5
1,302,258 - -0.4
1,302,262 + +0.2

Or see this region's nucleotide sequence