Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1129

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1127 and B158DRAFT_1128 are separated by 165 nucleotidesB158DRAFT_1128 and B158DRAFT_1129 overlap by 17 nucleotidesB158DRAFT_1129 and B158DRAFT_1130 are separated by 126 nucleotidesB158DRAFT_1130 and B158DRAFT_1131 are separated by 214 nucleotides B158DRAFT_1127: B158DRAFT_1127 - diguanylate cyclase (GGDEF) domain, at 1,167,109 to 1,168,140 _1127 B158DRAFT_1128: B158DRAFT_1128 - hypothetical protein, at 1,168,306 to 1,168,815 _1128 B158DRAFT_1129: B158DRAFT_1129 - hypothetical protein, at 1,168,799 to 1,169,305 _1129 B158DRAFT_1130: B158DRAFT_1130 - RNA-binding proteins (RRM domain), at 1,169,432 to 1,169,686 _1130 B158DRAFT_1131: B158DRAFT_1131 - Imidazolonepropionase and related amidohydrolases, at 1,169,901 to 1,171,262 _1131 Position (kb) 1168 1169 1170Strain fitness (log2 ratio) -1 0 1at 1167.897 kb on + strand, within B158DRAFT_1127at 1167.932 kb on + strand, within B158DRAFT_1127at 1167.998 kb on - strand, within B158DRAFT_1127at 1168.033 kb on + strand, within B158DRAFT_1127at 1168.041 kb on - strandat 1168.058 kb on - strandat 1168.156 kb on + strandat 1168.174 kb on - strandat 1168.188 kb on - strandat 1168.384 kb on + strand, within B158DRAFT_1128at 1168.416 kb on - strand, within B158DRAFT_1128at 1168.538 kb on - strand, within B158DRAFT_1128at 1168.538 kb on - strand, within B158DRAFT_1128at 1168.583 kb on - strand, within B158DRAFT_1128at 1168.622 kb on - strand, within B158DRAFT_1128at 1168.638 kb on + strand, within B158DRAFT_1128at 1168.638 kb on + strand, within B158DRAFT_1128at 1168.641 kb on - strand, within B158DRAFT_1128at 1168.646 kb on - strand, within B158DRAFT_1128at 1168.653 kb on + strand, within B158DRAFT_1128at 1168.658 kb on + strand, within B158DRAFT_1128at 1168.658 kb on + strand, within B158DRAFT_1128at 1168.658 kb on + strand, within B158DRAFT_1128at 1168.672 kb on + strand, within B158DRAFT_1128at 1168.674 kb on - strand, within B158DRAFT_1128at 1168.724 kb on - strand, within B158DRAFT_1128at 1168.748 kb on + strand, within B158DRAFT_1128at 1168.761 kb on - strand, within B158DRAFT_1128at 1168.824 kb on - strandat 1168.847 kb on - strandat 1168.910 kb on + strand, within B158DRAFT_1129at 1169.157 kb on + strand, within B158DRAFT_1129at 1169.174 kb on - strand, within B158DRAFT_1129at 1169.302 kb on + strandat 1169.310 kb on - strandat 1169.437 kb on - strandat 1169.525 kb on - strand, within B158DRAFT_1130at 1169.532 kb on + strand, within B158DRAFT_1130at 1169.560 kb on + strand, within B158DRAFT_1130at 1169.560 kb on - strand, within B158DRAFT_1130at 1169.560 kb on - strand, within B158DRAFT_1130at 1169.568 kb on - strand, within B158DRAFT_1130at 1169.608 kb on - strand, within B158DRAFT_1130at 1169.610 kb on + strand, within B158DRAFT_1130at 1169.610 kb on + strand, within B158DRAFT_1130at 1169.618 kb on - strand, within B158DRAFT_1130at 1169.618 kb on - strand, within B158DRAFT_1130at 1169.618 kb on - strand, within B158DRAFT_1130at 1169.632 kb on - strand, within B158DRAFT_1130at 1169.649 kb on + strand, within B158DRAFT_1130at 1169.657 kb on - strand, within B158DRAFT_1130at 1169.808 kb on - strandat 1169.883 kb on + strandat 1169.973 kb on - strandat 1169.983 kb on - strandat 1169.993 kb on - strandat 1169.993 kb on - strandat 1170.033 kb on + strandat 1170.175 kb on - strand, within B158DRAFT_1131at 1170.204 kb on - strand, within B158DRAFT_1131

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
remove
1,167,897 + B158DRAFT_1127 0.76 -0.3
1,167,932 + B158DRAFT_1127 0.80 +0.0
1,167,998 - B158DRAFT_1127 0.86 -0.4
1,168,033 + B158DRAFT_1127 0.90 -0.1
1,168,041 - -0.7
1,168,058 - +0.1
1,168,156 + -0.0
1,168,174 - -0.0
1,168,188 - -0.3
1,168,384 + B158DRAFT_1128 0.15 -0.5
1,168,416 - B158DRAFT_1128 0.22 -0.7
1,168,538 - B158DRAFT_1128 0.45 -0.3
1,168,538 - B158DRAFT_1128 0.45 -0.0
1,168,583 - B158DRAFT_1128 0.54 -0.5
1,168,622 - B158DRAFT_1128 0.62 +0.4
1,168,638 + B158DRAFT_1128 0.65 -0.6
1,168,638 + B158DRAFT_1128 0.65 -0.1
1,168,641 - B158DRAFT_1128 0.66 +0.7
1,168,646 - B158DRAFT_1128 0.67 -0.1
1,168,653 + B158DRAFT_1128 0.68 -0.2
1,168,658 + B158DRAFT_1128 0.69 -0.5
1,168,658 + B158DRAFT_1128 0.69 -0.0
1,168,658 + B158DRAFT_1128 0.69 -0.2
1,168,672 + B158DRAFT_1128 0.72 +0.2
1,168,674 - B158DRAFT_1128 0.72 -0.6
1,168,724 - B158DRAFT_1128 0.82 -0.3
1,168,748 + B158DRAFT_1128 0.87 -0.2
1,168,761 - B158DRAFT_1128 0.89 -0.6
1,168,824 - -0.6
1,168,847 - -1.0
1,168,910 + B158DRAFT_1129 0.22 +0.1
1,169,157 + B158DRAFT_1129 0.71 -0.2
1,169,174 - B158DRAFT_1129 0.74 +0.1
1,169,302 + +1.4
1,169,310 - +0.0
1,169,437 - -0.9
1,169,525 - B158DRAFT_1130 0.36 +0.8
1,169,532 + B158DRAFT_1130 0.39 -0.0
1,169,560 + B158DRAFT_1130 0.50 -1.1
1,169,560 - B158DRAFT_1130 0.50 -0.1
1,169,560 - B158DRAFT_1130 0.50 -0.8
1,169,568 - B158DRAFT_1130 0.53 +0.3
1,169,608 - B158DRAFT_1130 0.69 -0.4
1,169,610 + B158DRAFT_1130 0.70 -0.8
1,169,610 + B158DRAFT_1130 0.70 -0.3
1,169,618 - B158DRAFT_1130 0.73 +0.6
1,169,618 - B158DRAFT_1130 0.73 -0.7
1,169,618 - B158DRAFT_1130 0.73 +0.0
1,169,632 - B158DRAFT_1130 0.78 -0.2
1,169,649 + B158DRAFT_1130 0.85 +0.1
1,169,657 - B158DRAFT_1130 0.88 -0.3
1,169,808 - +0.0
1,169,883 + -0.5
1,169,973 - -1.1
1,169,983 - -0.1
1,169,993 - -0.3
1,169,993 - -0.0
1,170,033 + -0.4
1,170,175 - B158DRAFT_1131 0.20 +0.1
1,170,204 - B158DRAFT_1131 0.22 -0.8

Or see this region's nucleotide sequence